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The map label for this gene is occM [H]

Identifier: 107022812

GI number: 107022812

Start: 1387897

End: 1388664

Strand: Reverse

Name: occM [H]

Synonym: Bcen_1260

Alternate gene names: 107022812

Gene position: 1388664-1387897 (Counterclockwise)

Preceding gene: 107022813

Following gene: 107022811

Centisome position: 42.15

GC content: 70.7

Gene sequence:

>768_bases
ATGATCTTCTCGCTGCCGTTCCTGCTCGACACGGTGATGCCGAAGCTGCTCGCCGCGGTGCCGACCACGCTCGCGCTGAC
GCTCCTATCGGGTGCGGCCAGCGTGCTGCTGGGCGTGCCGCTCGCGCTCGCCGCCGGTGCGCGCCATACGCCGCTGCGCT
GGTCCGCGCGCGGCTGGCTGATGCTGATCCGCGGCACGCCGCTGCTCGTTCAGCTTTATCTGCTGTACTACGGATTCGGG
CAGATCGTGCCGCGCGAATGGATGCGCGACAGCTGGGCGTCGCCGCTGCTGCGCGACGCGTTCTGGTACGCGATCGTCGC
GCTGAGCGTGAACGAGAGCGCGTACGTCGCGACGATCCTGCGCGGCGCGATCGCCGGCGTGCCGGCCGGCGAGATCGAGG
CCGGCCACGCCTACGGGATGACGCGCACGCAGGTGCTGCGCCGCATCGTCGGCCCGCGTGCGTGGCGGCTTGCGCTGCCC
GCGCTCACCGGCGAGGCCATCCTGCTGCTGAAATCGACCGTCCTCGCGTCGACCGTGACCGTATTCGACGTGATGGGCAC
GGCCAATACGCTGCGCTTCGAGACGTTGCGCGTGTACGAACCGCTGGCCGGTGCGGCGATCGTCTATGTCGTGCTGGTCG
CGCTGCTGACCATTCCCGCCGCCCGTCTCGAGCAGCGCATCAATCGCTACCTGACGCGCCAGCCCGACGAACGCGTGCCT
GCCCGGCGCCGCCGCGCGTCGTCGGGCGCGTGGGCGGCACCCAACTGA

Upstream 100 bases:

>100_bases
TGGTCACGGCCGCGCTGTTCCTGCTGCTGAGCATCACGTCGACCGGCATTTTCGCGGCGCTGGAGCGGCATGCGAATCGC
GGCACGAGGCGCGCGACGAC

Downstream 100 bases:

>100_bases
TTCCTGCCTTGGTACCGATTTCGACGATGTCCGATCCTCGCCCCTTGCTGTTTTCCCTGTATGAACAAGCCAGCGTCGGC
TGCGGCGGCGCGCCGAGCCT

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MIFSLPFLLDTVMPKLLAAVPTTLALTLLSGAASVLLGVPLALAAGARHTPLRWSARGWLMLIRGTPLLVQLYLLYYGFG
QIVPREWMRDSWASPLLRDAFWYAIVALSVNESAYVATILRGAIAGVPAGEIEAGHAYGMTRTQVLRRIVGPRAWRLALP
ALTGEAILLLKSTVLASTVTVFDVMGTANTLRFETLRVYEPLAGAAIVYVVLVALLTIPAARLEQRINRYLTRQPDERVP
ARRRRASSGAWAAPN

Sequences:

>Translated_255_residues
MIFSLPFLLDTVMPKLLAAVPTTLALTLLSGAASVLLGVPLALAAGARHTPLRWSARGWLMLIRGTPLLVQLYLLYYGFG
QIVPREWMRDSWASPLLRDAFWYAIVALSVNESAYVATILRGAIAGVPAGEIEAGHAYGMTRTQVLRRIVGPRAWRLALP
ALTGEAILLLKSTVLASTVTVFDVMGTANTLRFETLRVYEPLAGAAIVYVVLVALLTIPAARLEQRINRYLTRQPDERVP
ARRRRASSGAWAAPN
>Mature_255_residues
MIFSLPFLLDTVMPKLLAAVPTTLALTLLSGAASVLLGVPLALAAGARHTPLRWSARGWLMLIRGTPLLVQLYLLYYGFG
QIVPREWMRDSWASPLLRDAFWYAIVALSVNESAYVATILRGAIAGVPAGEIEAGHAYGMTRTQVLRRIVGPRAWRLALP
ALTGEAILLLKSTVLASTVTVFDVMGTANTLRFETLRVYEPLAGAAIVYVVLVALLTIPAARLEQRINRYLTRQPDERVP
ARRRRASSGAWAAPN

Specific function: Component of the octopine active transport system probably consisting of four subunits:Q, M, P and T [H]

COG id: COG4160

COG function: function code E; ABC-type arginine/histidine transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=233, Percent_Identity=33.4763948497854, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=33.6448598130841, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788645, Length=211, Percent_Identity=33.175355450237, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787087, Length=238, Percent_Identity=27.3109243697479, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=31.1926605504587, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1787030, Length=220, Percent_Identity=28.6363636363636, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786873, Length=221, Percent_Identity=28.5067873303167, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786874, Length=228, Percent_Identity=25, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27842; Mature: 27842

Theoretical pI: Translated: 11.22; Mature: 11.22

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFSLPFLLDTVMPKLLAAVPTTLALTLLSGAASVLLGVPLALAAGARHTPLRWSARGWL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEE
MLIRGTPLLVQLYLLYYGFGQIVPREWMRDSWASPLLRDAFWYAIVALSVNESAYVATIL
EEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH
RGAIAGVPAGEIEAGHAYGMTRTQVLRRIVGPRAWRLALPALTGEAILLLKSTVLASTVT
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEHHHHCCHHHHHHHHHHHHHHHH
VFDVMGTANTLRFETLRVYEPLAGAAIVYVVLVALLTIPAARLEQRINRYLTRQPDERVP
HHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC
ARRRRASSGAWAAPN
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MIFSLPFLLDTVMPKLLAAVPTTLALTLLSGAASVLLGVPLALAAGARHTPLRWSARGWL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEE
MLIRGTPLLVQLYLLYYGFGQIVPREWMRDSWASPLLRDAFWYAIVALSVNESAYVATIL
EEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH
RGAIAGVPAGEIEAGHAYGMTRTQVLRRIVGPRAWRLALPALTGEAILLLKSTVLASTVT
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHEHHHHCCHHHHHHHHHHHHHHHH
VFDVMGTANTLRFETLRVYEPLAGAAIVYVVLVALLTIPAARLEQRINRYLTRQPDERVP
HHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC
ARRRRASSGAWAAPN
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1655707; 1732218 [H]