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The map label for this gene is rbsC [H]

Identifier: 107022809

GI number: 107022809

Start: 1383765

End: 1384826

Strand: Reverse

Name: rbsC [H]

Synonym: Bcen_1257

Alternate gene names: 107022809

Gene position: 1384826-1383765 (Counterclockwise)

Preceding gene: 107022810

Following gene: 107022808

Centisome position: 42.03

GC content: 70.34

Gene sequence:

>1062_bases
ATGAAACCCGTGACTTCTTCTTCCGCTGTGCGTCAAGCCGCATCCGTCGAACGGTCGTCGCGCCGCGGGCCGGCACGCAT
CCGCGATGCGCTCGAGCGGACGGGCATCCTGCTCGTGCTGGCCGTTCTCGTGGTCGTGTTCGCGCTCAGGGAGCCTGCGT
TCCTGAACCTCGACAATCTGTTCAGCATCCTCCAGGCGGTGTCGATCGTCGCGTTGCTCGGCATCGGCGTGACGGTCACG
CTCGCGGCCGGCGGCTTCGACCTGTCGGTCGGCAGCGTGGCCGCGACCGCGCAGATGGCCGCGAGCTACGTGCTGGTCGT
CTGGCACGGAAGCGCGTGGGCGGCCGTGTTCGCCTGTGTCGTGCTCGGCGTGGCCGCCGGCTTGTTCAACGGCTTGCTGA
TCACGCGGCTGCGGGTGCCCGACCAGCTCGCGACGCTCGGCACGCTGTTCCTGCTGGCCGGCCTGCAGTTGATCCCGACC
GGTGGCCGCTCGCTCGCGACCGGCTCCGTGCTGCCCGACGGCACGGACGCGACGGGCGTGTTCCCCGACGCGTTCCTCGC
GCTCGGCCGGCTGCGCGTGTTCGACGTCGTACCGTTGCCGGTGCTGCTGCTCGCGGCGGTGACGGTGCTGGCCTGCGTCA
CGATGGAAGCGACGCGCTGGGGCCGCGTGATCTATGCGATCGGCGGCAACGAAACGGCTGCGCGATTGGCCGGTGCGCCG
GCCGCGCGCTACCGTATCGCCGCGTATGTCGTGTCGGGCGCGATCGCGTCGCTGGGCGGCGTGCTGATCGCCGCGCGGGT
CGGCCGCGGCGACGTCAGCGCGGGCCATTCGCTGCTGCTCGACGCGGTGGCCGCCGCGCTGATCGGTTACGCGGTGTGGG
GCGCGAAGCGGCCCAACGTGTTCGGCACGGTCGTCGGCGCGGTGTTCGTCGGCGTGCTGCTCAACGGGCTGACGATGCTG
AACGCTCCCTACTATATGCAGGACTTCATCAAGGGCGTGCTGCTCGTGTTGGCCCTCGCGTTTACGTTCGGCATCGGTCG
TCGGGCGGATGCCCGGGCGTGA

Upstream 100 bases:

>100_bases
ATCTCGAGGAAGCTGCCGAGATCGCCGATCGTATCGTGCGGTTCGATCGCGCGACGCTCGATGGCCTGTCTCCGACTTCC
TCCATCGTGGGTGCCTGCTC

Downstream 100 bases:

>100_bases
CGGGTGAGGTCGCAAGCCTTGGTACAGGCACGGACTGGTTCGAATAACCCGAAGGCCTGACTGTTTGTTATCCAAAGTAA
TATCGATTGCCGAATCGGTC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKPVTSSSAVRQAASVERSSRRGPARIRDALERTGILLVLAVLVVVFALREPAFLNLDNLFSILQAVSIVALLGIGVTVT
LAAGGFDLSVGSVAATAQMAASYVLVVWHGSAWAAVFACVVLGVAAGLFNGLLITRLRVPDQLATLGTLFLLAGLQLIPT
GGRSLATGSVLPDGTDATGVFPDAFLALGRLRVFDVVPLPVLLLAAVTVLACVTMEATRWGRVIYAIGGNETAARLAGAP
AARYRIAAYVVSGAIASLGGVLIAARVGRGDVSAGHSLLLDAVAAALIGYAVWGAKRPNVFGTVVGAVFVGVLLNGLTML
NAPYYMQDFIKGVLLVLALAFTFGIGRRADARA

Sequences:

>Translated_353_residues
MKPVTSSSAVRQAASVERSSRRGPARIRDALERTGILLVLAVLVVVFALREPAFLNLDNLFSILQAVSIVALLGIGVTVT
LAAGGFDLSVGSVAATAQMAASYVLVVWHGSAWAAVFACVVLGVAAGLFNGLLITRLRVPDQLATLGTLFLLAGLQLIPT
GGRSLATGSVLPDGTDATGVFPDAFLALGRLRVFDVVPLPVLLLAAVTVLACVTMEATRWGRVIYAIGGNETAARLAGAP
AARYRIAAYVVSGAIASLGGVLIAARVGRGDVSAGHSLLLDAVAAALIGYAVWGAKRPNVFGTVVGAVFVGVLLNGLTML
NAPYYMQDFIKGVLLVLALAFTFGIGRRADARA
>Mature_353_residues
MKPVTSSSAVRQAASVERSSRRGPARIRDALERTGILLVLAVLVVVFALREPAFLNLDNLFSILQAVSIVALLGIGVTVT
LAAGGFDLSVGSVAATAQMAASYVLVVWHGSAWAAVFACVVLGVAAGLFNGLLITRLRVPDQLATLGTLFLLAGLQLIPT
GGRSLATGSVLPDGTDATGVFPDAFLALGRLRVFDVVPLPVLLLAAVTVLACVTMEATRWGRVIYAIGGNETAARLAGAP
AARYRIAAYVVSGAIASLGGVLIAARVGRGDVSAGHSLLLDAVAAALIGYAVWGAKRPNVFGTVVGAVFVGVLLNGLTML
NAPYYMQDFIKGVLLVLALAFTFGIGRRADARA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=35.8552631578947, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI145693152, Length=336, Percent_Identity=31.25, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788896, Length=314, Percent_Identity=28.9808917197452, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790524, Length=325, Percent_Identity=27.0769230769231, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1787793, Length=294, Percent_Identity=30.2721088435374, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=37.8787878787879, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082395, Length=268, Percent_Identity=30.5970149253731, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788471, Length=322, Percent_Identity=29.8136645962733, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787794, Length=311, Percent_Identity=27.0096463022508, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36304; Mature: 36304

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVTSSSAVRQAASVERSSRRGPARIRDALERTGILLVLAVLVVVFALREPAFLNLDNL
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEECHHHH
FSILQAVSIVALLGIGVTVTLAAGGFDLSVGSVAATAQMAASYVLVVWHGSAWAAVFACV
HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCHHHHHHHHH
VLGVAAGLFNGLLITRLRVPDQLATLGTLFLLAGLQLIPTGGRSLATGSVLPDGTDATGV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCC
FPDAFLALGRLRVFDVVPLPVLLLAAVTVLACVTMEATRWGRVIYAIGGNETAARLAGAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCC
AARYRIAAYVVSGAIASLGGVLIAARVGRGDVSAGHSLLLDAVAAALIGYAVWGAKRPNV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
FGTVVGAVFVGVLLNGLTMLNAPYYMQDFIKGVLLVLALAFTFGIGRRADARA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKPVTSSSAVRQAASVERSSRRGPARIRDALERTGILLVLAVLVVVFALREPAFLNLDNL
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEECHHHH
FSILQAVSIVALLGIGVTVTLAAGGFDLSVGSVAATAQMAASYVLVVWHGSAWAAVFACV
HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCHHHHHHHHH
VLGVAAGLFNGLLITRLRVPDQLATLGTLFLLAGLQLIPTGGRSLATGSVLPDGTDATGV
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCC
FPDAFLALGRLRVFDVVPLPVLLLAAVTVLACVTMEATRWGRVIYAIGGNETAARLAGAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCC
AARYRIAAYVVSGAIASLGGVLIAARVGRGDVSAGHSLLLDAVAAALIGYAVWGAKRPNV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
FGTVVGAVFVGVLLNGLTMLNAPYYMQDFIKGVLLVLALAFTFGIGRRADARA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]