| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
Click here to switch to the map view.
The map label for this gene is yneA [C]
Identifier: 107022808
GI number: 107022808
Start: 1382528
End: 1383598
Strand: Reverse
Name: yneA [C]
Synonym: Bcen_1256
Alternate gene names: 107022808
Gene position: 1383598-1382528 (Counterclockwise)
Preceding gene: 107022809
Following gene: 107022807
Centisome position: 42.0
GC content: 67.79
Gene sequence:
>1071_bases ATGCGCTCGTTGCTTCGCCGAAAGTCGCGCCTCGAACCGAAACTCGGTGCACTCGTATTGGGCGCCGCACTCGCGCTCGG TATGCCCGCGGCACACGCCGGCCCGCTCAAGGGGGCACCCGCGCCGTTCGACAAGGGCGGCGTGAAGATCGCGCTCGTCA ACTACCTGTCGACCGGCGATTTCTTCCAGGCCTACGAAGCCGGCGCGCAGAAGCAGGCACGCGCGCTCGGCGTCGATCTG CGTATCTACGAAGGCCGGCAGGACGCGGCCGAGCAACGCGAGCAGATTCAGCAGGCGATCAGCATCGGCGTGTCAGCGAT CATCGTCAATCACGGCTTGCCGGAATCGCTGAAGGACGTCGTTCAGCGTGCGCTCGACAAAGGCATCAAGGTCGTCGCGT TCGACGTCGATCTCGCCAATCCGAAGGTGCCGCAGATCGAGCAGAACGATCGCGACCTCGCGAACCTGCTGCTCGATCAG GCCGTGAAGGACAACGGCGACGCGTTCTCGGCCGGGTACGTGTACGTGGCCGGATTCGCGCCGCTCGACCGGCGCGACGC CGCGTGGCGCGATTTCAAGCGCGCGCACCCGAAGGTGCAGGAAAAGGCGCGCTGGGGCACCGTCGACAATCCGATCGCGC AGTCGGTCGCGAACCAGGCGGCCGCTGCGTACCGTGCGAATCCGGACATTCGCGTCGTGTTCGCGCCGTACGACGAGTTC GCGCGCGGCGCGAAGCTCGCGGCCGACGAGGCCAGGCTCTCGTCGAAAATTCGCATTTACAGCGCGGACGTGTCGACGGC CGACATCGCGGCCATCCGCGCGCCGAACAGCGCGTGGGTCGCGACGGCCGCGACCAATCCGGCGGTCGTCGGCGCGGTGT CGGTGCGGGCCGCGGCGTTGCTGGTCGCCGGGCAAAACCCGGGCGCGCGCATCGCGGTCAAGCCGACGCTGATCACGCGC GACGACCTCGTGAAGAACGACATTCATACCGTGGCCGAACTCGGCGCGAAGTTTCCGGCGTTTCGCGCGAGCGACGCGGC GACGGCCGCGTGGATTCCGGCGCTCGACTGA
Upstream 100 bases:
>100_bases GTTATCCAAAGTAATATCGATTGCCGAATCGGTCGGTTTGAGTTCGCGTGCCGTGCTGATAGATTGAGCCGATATCGTCC TGTACGGAGACAGACCCGCC
Downstream 100 bases:
>100_bases TCGCGCTGGCACGCAGCGAACCGATCGGTCGCCTGCGTGCCGCCTACCCATGACTCGACCATGACGACCCTGAACGACTA TCTCGCGCAAAAGCGCGATG
Product: periplasmic binding protein/LacI transcriptional regulator
Products: NA
Alternate protein names: Transport System Protein; Ribose ABC Transporter; ABC-Type Sugar Transport System Periplasmic Component; Sugar ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MRSLLRRKSRLEPKLGALVLGAALALGMPAAHAGPLKGAPAPFDKGGVKIALVNYLSTGDFFQAYEAGAQKQARALGVDL RIYEGRQDAAEQREQIQQAISIGVSAIIVNHGLPESLKDVVQRALDKGIKVVAFDVDLANPKVPQIEQNDRDLANLLLDQ AVKDNGDAFSAGYVYVAGFAPLDRRDAAWRDFKRAHPKVQEKARWGTVDNPIAQSVANQAAAAYRANPDIRVVFAPYDEF ARGAKLAADEARLSSKIRIYSADVSTADIAAIRAPNSAWVATAATNPAVVGAVSVRAAALLVAGQNPGARIAVKPTLITR DDLVKNDIHTVAELGAKFPAFRASDAATAAWIPALD
Sequences:
>Translated_356_residues MRSLLRRKSRLEPKLGALVLGAALALGMPAAHAGPLKGAPAPFDKGGVKIALVNYLSTGDFFQAYEAGAQKQARALGVDL RIYEGRQDAAEQREQIQQAISIGVSAIIVNHGLPESLKDVVQRALDKGIKVVAFDVDLANPKVPQIEQNDRDLANLLLDQ AVKDNGDAFSAGYVYVAGFAPLDRRDAAWRDFKRAHPKVQEKARWGTVDNPIAQSVANQAAAAYRANPDIRVVFAPYDEF ARGAKLAADEARLSSKIRIYSADVSTADIAAIRAPNSAWVATAATNPAVVGAVSVRAAALLVAGQNPGARIAVKPTLITR DDLVKNDIHTVAELGAKFPAFRASDAATAAWIPALD >Mature_356_residues MRSLLRRKSRLEPKLGALVLGAALALGMPAAHAGPLKGAPAPFDKGGVKIALVNYLSTGDFFQAYEAGAQKQARALGVDL RIYEGRQDAAEQREQIQQAISIGVSAIIVNHGLPESLKDVVQRALDKGIKVVAFDVDLANPKVPQIEQNDRDLANLLLDQ AVKDNGDAFSAGYVYVAGFAPLDRRDAAWRDFKRAHPKVQEKARWGTVDNPIAQSVANQAAAAYRANPDIRVVFAPYDEF ARGAKLAADEARLSSKIRIYSADVSTADIAAIRAPNSAWVATAATNPAVVGAVSVRAAALLVAGQNPGARIAVKPTLITR DDLVKNDIHTVAELGAKFPAFRASDAATAAWIPALD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37838; Mature: 37838
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSLLRRKSRLEPKLGALVLGAALALGMPAAHAGPLKGAPAPFDKGGVKIALVNYLSTGD CHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCH FFQAYEAGAQKQARALGVDLRIYEGRQDAAEQREQIQQAISIGVSAIIVNHGLPESLKDV HHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCHHEEEEECCCCHHHHHH VQRALDKGIKVVAFDVDLANPKVPQIEQNDRDLANLLLDQAVKDNGDAFSAGYVYVAGFA HHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCEEEEEECC PLDRRDAAWRDFKRAHPKVQEKARWGTVDNPIAQSVANQAAAAYRANPDIRVVFAPYDEF CCCCCCHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH ARGAKLAADEARLSSKIRIYSADVSTADIAAIRAPNSAWVATAATNPAVVGAVSVRAAAL HCCCCCCHHHHHHCCEEEEEECCCCCHHEEEEECCCCCEEEEECCCCCEEEHHHHHEEEE LVAGQNPGARIAVKPTLITRDDLVKNDIHTVAELGAKFPAFRASDAATAAWIPALD EEECCCCCCEEEEECEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC >Mature Secondary Structure MRSLLRRKSRLEPKLGALVLGAALALGMPAAHAGPLKGAPAPFDKGGVKIALVNYLSTGD CHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCH FFQAYEAGAQKQARALGVDLRIYEGRQDAAEQREQIQQAISIGVSAIIVNHGLPESLKDV HHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHCHHEEEEECCCCHHHHHH VQRALDKGIKVVAFDVDLANPKVPQIEQNDRDLANLLLDQAVKDNGDAFSAGYVYVAGFA HHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCEEEEEECC PLDRRDAAWRDFKRAHPKVQEKARWGTVDNPIAQSVANQAAAAYRANPDIRVVFAPYDEF CCCCCCHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH ARGAKLAADEARLSSKIRIYSADVSTADIAAIRAPNSAWVATAATNPAVVGAVSVRAAAL HCCCCCCHHHHHHCCEEEEEECCCCCHHEEEEECCCCCEEEEECCCCCEEEHHHHHEEEE LVAGQNPGARIAVKPTLITRDDLVKNDIHTVAELGAKFPAFRASDAATAAWIPALD EEECCCCCCEEEEECEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA