| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is 107022797
Identifier: 107022797
GI number: 107022797
Start: 1371811
End: 1372842
Strand: Reverse
Name: 107022797
Synonym: Bcen_1244
Alternate gene names: NA
Gene position: 1372842-1371811 (Counterclockwise)
Preceding gene: 107022798
Following gene: 107022796
Centisome position: 41.67
GC content: 67.83
Gene sequence:
>1032_bases ATGTCGTTTTCGTTCTTGCCGGCGCGTCGTGCGCTGGCGGCCACGCTCACCGCCGCACTCGCCTTCGCCGGCGCGGTCAT CCCGCAAGCCGCGCACGCGGAAGGCCGCATCCGCATCGCCGAGCAGTTCGGCGTCGTCTACCTGATGCTGAACGTCGCGC GCGACCAGCAACTGATCGAGAAGGAAGGGCGCAAGGCCGGCCTCGACATCAAGGTCGACTGGGTGCGGCTGTCGGGCGGA GCGGCCGTGAACGACGCGCTGCTGTCCGGCGCGGTGGACATCGCGGGCGCGGGCGTCGGGCCGCTGTTGACCGTGTGGGA CCGCACGCGCGGCCGGCAGAACGTGAAGGGCGTCGCGTCGCTCGGCAATTTTCCGTACTACCTCGTGAGCAGCAACCCGA ACGTGAAGACGATCGCCGACCTGAGCGCGAAGGACCGCATCGCGGTGCCGGCGGTCGGCGTGTCGGTGCAGTCGCGCGTG CTGCAGTACGCGGCGGCGAAGCAGTGGGGCGACAAGCAGTTCGACAAGCTCGACCCGCTCACGCAGGCGATTCCGCATCC GGACGCGACGGCCGCGATTCTCGCGAACAGCAACGTGATCACCGGCCACTTCGGCAATCCGCCGTTCCAGGAGCAGGAAC TCGCCGGCAATCCGAACGCGCACATCGTGCTGAATTCGTATGACGTGCTCGGCGGCCCGAGCTCCGCGACGGTGCTGTAC GCGACTGAGAAGTTCCGCGACGACAACCCGAAGACCTACCGGGCGTTCGTCGCCGCGCTGGCCGACGCCGCCCGGCAGAT CGCGGCCGATCCGGAACGCGCGGCCGATACCTATATTCGCGTGAACGGGTCGAAGATCGATCGCGCGCTGCTGCTGAAGA TCCTGCGCAATCCGCAGGTGCAGTTCAAGACCGCGCCGCAGAACACGCTGCCGCTCGCGCAGTTCATGCATCGCACCGGC GCGATCCGCAACGAACCGAAGTCGTGGCGCGACTACTTCTTCGACGATCCGGCGACGGCCGGCGGCAGTTGA
Upstream 100 bases:
>100_bases TCTGCGCCGCAAGCTGTACCGCACGACGATCGAAGGCGACGCGCCTTTCTGAGCCGCGCGCCGCGTCATTCATTTCCGCT TTTTCCTGACCGGAGTTCCG
Downstream 100 bases:
>100_bases GCGGCGCCGATGCCGTGACGCCGTGACGCCGTGATCGACGCTTATGCGTCGGCGCGGTTTCGATATGTGCAATCGATGGT TGGTCCGCACGGCGCCCAGC
Product: ABC transporter substrate-binding protein
Products: NA
Alternate protein names: NMT1/THI5 Like Domain Protein; NLPA Lipoprotein; Nlpa Lipoprotein; ABC-Type Transporter Periplasmic; Transporter Periplasmic Component; Periplasmic Protein
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MSFSFLPARRALAATLTAALAFAGAVIPQAAHAEGRIRIAEQFGVVYLMLNVARDQQLIEKEGRKAGLDIKVDWVRLSGG AAVNDALLSGAVDIAGAGVGPLLTVWDRTRGRQNVKGVASLGNFPYYLVSSNPNVKTIADLSAKDRIAVPAVGVSVQSRV LQYAAAKQWGDKQFDKLDPLTQAIPHPDATAAILANSNVITGHFGNPPFQEQELAGNPNAHIVLNSYDVLGGPSSATVLY ATEKFRDDNPKTYRAFVAALADAARQIAADPERAADTYIRVNGSKIDRALLLKILRNPQVQFKTAPQNTLPLAQFMHRTG AIRNEPKSWRDYFFDDPATAGGS
Sequences:
>Translated_343_residues MSFSFLPARRALAATLTAALAFAGAVIPQAAHAEGRIRIAEQFGVVYLMLNVARDQQLIEKEGRKAGLDIKVDWVRLSGG AAVNDALLSGAVDIAGAGVGPLLTVWDRTRGRQNVKGVASLGNFPYYLVSSNPNVKTIADLSAKDRIAVPAVGVSVQSRV LQYAAAKQWGDKQFDKLDPLTQAIPHPDATAAILANSNVITGHFGNPPFQEQELAGNPNAHIVLNSYDVLGGPSSATVLY ATEKFRDDNPKTYRAFVAALADAARQIAADPERAADTYIRVNGSKIDRALLLKILRNPQVQFKTAPQNTLPLAQFMHRTG AIRNEPKSWRDYFFDDPATAGGS >Mature_342_residues SFSFLPARRALAATLTAALAFAGAVIPQAAHAEGRIRIAEQFGVVYLMLNVARDQQLIEKEGRKAGLDIKVDWVRLSGGA AVNDALLSGAVDIAGAGVGPLLTVWDRTRGRQNVKGVASLGNFPYYLVSSNPNVKTIADLSAKDRIAVPAVGVSVQSRVL QYAAAKQWGDKQFDKLDPLTQAIPHPDATAAILANSNVITGHFGNPPFQEQELAGNPNAHIVLNSYDVLGGPSSATVLYA TEKFRDDNPKTYRAFVAALADAARQIAADPERAADTYIRVNGSKIDRALLLKILRNPQVQFKTAPQNTLPLAQFMHRTGA IRNEPKSWRDYFFDDPATAGGS
Specific function: Unknown
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36856; Mature: 36725
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFSFLPARRALAATLTAALAFAGAVIPQAAHAEGRIRIAEQFGVVYLMLNVARDQQLIE CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHCEEEEEEHHHHHHHHHH KEGRKAGLDIKVDWVRLSGGAAVNDALLSGAVDIAGAGVGPLLTVWDRTRGRQNVKGVAS HCCCCCCCEEEEEEEEECCCCHHHHHHHHCCHHCCCCCCCHHHHHHHHHCCCCCHHHHHH LGNFPYYLVSSNPNVKTIADLSAKDRIAVPAVGVSVQSRVLQYAAAKQWGDKQFDKLDPL CCCCCEEEEECCCCEEEEECCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCHH TQAIPHPDATAAILANSNVITGHFGNPPFQEQELAGNPNAHIVLNSYDVLGGPSSATVLY HHHCCCCCCCEEEEECCCEEEECCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCEEEE ATEKFRDDNPKTYRAFVAALADAARQIAADPERAADTYIRVNGSKIDRALLLKILRNPQV EEHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHHHHCCCCE QFKTAPQNTLPLAQFMHRTGAIRNEPKSWRDYFFDDPATAGGS EEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCC >Mature Secondary Structure SFSFLPARRALAATLTAALAFAGAVIPQAAHAEGRIRIAEQFGVVYLMLNVARDQQLIE CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHCEEEEEEHHHHHHHHHH KEGRKAGLDIKVDWVRLSGGAAVNDALLSGAVDIAGAGVGPLLTVWDRTRGRQNVKGVAS HCCCCCCCEEEEEEEEECCCCHHHHHHHHCCHHCCCCCCCHHHHHHHHHCCCCCHHHHHH LGNFPYYLVSSNPNVKTIADLSAKDRIAVPAVGVSVQSRVLQYAAAKQWGDKQFDKLDPL CCCCCEEEEECCCCEEEEECCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCHH TQAIPHPDATAAILANSNVITGHFGNPPFQEQELAGNPNAHIVLNSYDVLGGPSSATVLY HHHCCCCCCCEEEEECCCEEEECCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCEEEE ATEKFRDDNPKTYRAFVAALADAARQIAADPERAADTYIRVNGSKIDRALLLKILRNPQV EEHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHHHHCCCCE QFKTAPQNTLPLAQFMHRTGAIRNEPKSWRDYFFDDPATAGGS EEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA