| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is fiu [H]
Identifier: 107022728
GI number: 107022728
Start: 1292473
End: 1294722
Strand: Reverse
Name: fiu [H]
Synonym: Bcen_1175
Alternate gene names: 107022728
Gene position: 1294722-1292473 (Counterclockwise)
Preceding gene: 107022737
Following gene: 107022727
Centisome position: 39.3
GC content: 66.49
Gene sequence:
>2250_bases ATGAACGCGAATGATTGTCGTTTTCAACTACACAAGATAAAATTCACCCAACAACACAAACCACCGCGCAACGGCCATGT GAGGCAATCACTCAGTCATCCTCAAATTTCCATGTCGAAACGACAGATCTCCGGGCGGCGTTTTCCTGTGCTGGCCCTGT CGCTGTGCTCGATCGCCGGCGTTGCTTCCTCCCCTGCTCCAGCAGCCGAGTTCGACGACGAACTGCCTGCGGTCGAAGTA CGCAGCCGTCGTCATCCAAACGATCCGCGCGCCGAAAGCGTGAGTACGGCGACGCGCACCGCGAGCGATCCGCGCGACGT ACCGCAAACCATCGACAGCGTCCCGGTAGAGGAAACGCTGTCCTATGGCGGTCGCACGCTGGCCGACGCGCTGGCCGGCG TGCCCGGTGTGTCCAATACGTCGGACACGCGCTTCGATTCGTTCCGCATTCGCGGCTTTTCCGCCGCGGGCGACCTGCTG CTCGACGGCATGCGCGACGATGCGCAATACGTGCGCAGTCTCAGCAACATCGAACGCGTCGAAGTGCTGAAGGGGCCGGC AGCGGCGCTGTACGGGCGCGGCAGCGGCGGCGGCGTCATCAACCGGATCACCAAGCAGCCGTTGCCGGAAAACTTCGGGC ATCTGTCGGCGGCGACCGGCAGCTATGGACGGCTCGGCGCGTCGGTCGATCTCAACCGGATGCTGTCGAGCGCATGGAGC GTGCGGCTCAATGCCGGACGCGAACACGCAGGCAGCTTCCGCGACCACGTCGACAGCACGCGTCAGTACGTCGCACCGTC GATCAAATGGCACGACGCGCGGCGCAGCTGGCTGCTGCAGTTCGAATACGACGCGTACCGGCGCGTGCCCGATCGCGGCA TGCCGGCGCCGGTCGCCGCGCTCGACGCGGCCGGCAAGCCGTTCGCGTTCTCGCTGCCGTCCGCGCCACGCGCAACCTTC TTCGGCGCGGCGGGCCGCGACACGATTCGCGACGAGAACATGAACTGGCGCTCGGTCTTCACGCACGCGCTCGACGGCGA CTGGGAATTGCGCCATACGCTCGGCGTGCTGAATTTGCGCAGCACCTTCGACAATACCTACGTCACGCAAAGCTACGTCG CGAAGCCGCGCGACTACCGGCATGTGCAACGCGCACGCTATCTGCAGGACATGACGCATCTCAACGTCCAGACCGGCGTC GAACTGGGCGGCAAGGTCGCAACCGGTCCGGCGCTGCATCACCTGCTGTTCGGTATCGAATACGGCTGGCAGAAACGCGC GCCGACGCTCTGGCAGGCCGACGCGGCGCCGATTCCGGTGACCGGGCCGGATCGTTTCGCCCTGGTCGGCTCGACGCCGC GCCCGTATGCGATGAACCGCCACCGCGTCAGCGACTACGCGATCTTCGCGCAGGATCGCGTCGACCTCGGGCGAGCGTGG AAGCTCCTCGGCGGCCTGCGCGGGGAACGTTTCGACGTCGATTCGACCAACGCGCTGAACGGCCTGCATGCACGGCGCAC GACGGCGGCATGGAGCCCGCGGCTCGGCGTCGTGTGGTCGCCGGTCGGCACGCACAGCCTGTATGCGTCGTACAGCAAGA ACTTCGCGCCGGTCGGTGGCGACCTGATCGGCATCACGCCCGACGCGCGCGGCAACGCCAACGACCTCGGCCCGCAATAC ACGCGCCAATACGAGATCGGCGTGAAAAGCGACTGGCGCGACGGCGCGCTGAGCACGACGCTCGCGCTGTTTCAGCTCGA CCTGTACAACCGCCGCATCGCCGATCCGGTTCGGCCGGGCTTTTTCGACCTCACCGGCCTCGAGCGCAATCGCGGCCTGG AACTGGGCGTCGCCGGCCGGCTCGCGGGCGACTGGTTCGTCCGCGGCGGCATCGGCTGGCAACACGCGCGGGTGGTCGAC GCCGAGCCGAAGTACGCGGGCAAGCGCTCGGCGGGCGTGTCGGCGTCGAACGGCAGCCTGTTCGTCGGCCATGCGCCGCT ACGCGGTTTTTTCGCGGAACTCGGGCTGGTGTACGAAGGCGCGCGTTACGCCGATCGCGACAACCTGCTCGAATTGCCCG CGTACGTTCGCTGGGACGGCAAGGCCGGCTATCGCACGCGCGACTTCGAGGTGACGCTGGCGGCCGTCAACCTGACCGAT CGCGATTACTACGCGAATGCGACGGGCCTCGCGCAGATCATGCCCGGTACGCCACGCACGTTCACGCTGACGGCGGCATA CAAGTTCTGA
Upstream 100 bases:
>100_bases TTTCCCGTTTAACTGCGCACGCCGGAGCGGCGCACGCGAGCACCAAAACGCGTGCGAGTGTAGGCGGCGGTGCGGGGAGC GTCAAGGCGAGCGGCCGGCG
Downstream 100 bases:
>100_bases CCTCGCGGGTAGCGCCGACACCCGCGCAGCCGGCCCGCCGGGCGGCTTGCGGGTTGCACGCCTGTGCTATCGTATGCGCC GCGTTCGGTGCTCGCATGCG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: Ferric iron uptake protein; TonB-dependent receptor fiu [H]
Number of amino acids: Translated: 749; Mature: 749
Protein sequence:
>749_residues MNANDCRFQLHKIKFTQQHKPPRNGHVRQSLSHPQISMSKRQISGRRFPVLALSLCSIAGVASSPAPAAEFDDELPAVEV RSRRHPNDPRAESVSTATRTASDPRDVPQTIDSVPVEETLSYGGRTLADALAGVPGVSNTSDTRFDSFRIRGFSAAGDLL LDGMRDDAQYVRSLSNIERVEVLKGPAAALYGRGSGGGVINRITKQPLPENFGHLSAATGSYGRLGASVDLNRMLSSAWS VRLNAGREHAGSFRDHVDSTRQYVAPSIKWHDARRSWLLQFEYDAYRRVPDRGMPAPVAALDAAGKPFAFSLPSAPRATF FGAAGRDTIRDENMNWRSVFTHALDGDWELRHTLGVLNLRSTFDNTYVTQSYVAKPRDYRHVQRARYLQDMTHLNVQTGV ELGGKVATGPALHHLLFGIEYGWQKRAPTLWQADAAPIPVTGPDRFALVGSTPRPYAMNRHRVSDYAIFAQDRVDLGRAW KLLGGLRGERFDVDSTNALNGLHARRTTAAWSPRLGVVWSPVGTHSLYASYSKNFAPVGGDLIGITPDARGNANDLGPQY TRQYEIGVKSDWRDGALSTTLALFQLDLYNRRIADPVRPGFFDLTGLERNRGLELGVAGRLAGDWFVRGGIGWQHARVVD AEPKYAGKRSAGVSASNGSLFVGHAPLRGFFAELGLVYEGARYADRDNLLELPAYVRWDGKAGYRTRDFEVTLAAVNLTD RDYYANATGLAQIMPGTPRTFTLTAAYKF
Sequences:
>Translated_749_residues MNANDCRFQLHKIKFTQQHKPPRNGHVRQSLSHPQISMSKRQISGRRFPVLALSLCSIAGVASSPAPAAEFDDELPAVEV RSRRHPNDPRAESVSTATRTASDPRDVPQTIDSVPVEETLSYGGRTLADALAGVPGVSNTSDTRFDSFRIRGFSAAGDLL LDGMRDDAQYVRSLSNIERVEVLKGPAAALYGRGSGGGVINRITKQPLPENFGHLSAATGSYGRLGASVDLNRMLSSAWS VRLNAGREHAGSFRDHVDSTRQYVAPSIKWHDARRSWLLQFEYDAYRRVPDRGMPAPVAALDAAGKPFAFSLPSAPRATF FGAAGRDTIRDENMNWRSVFTHALDGDWELRHTLGVLNLRSTFDNTYVTQSYVAKPRDYRHVQRARYLQDMTHLNVQTGV ELGGKVATGPALHHLLFGIEYGWQKRAPTLWQADAAPIPVTGPDRFALVGSTPRPYAMNRHRVSDYAIFAQDRVDLGRAW KLLGGLRGERFDVDSTNALNGLHARRTTAAWSPRLGVVWSPVGTHSLYASYSKNFAPVGGDLIGITPDARGNANDLGPQY TRQYEIGVKSDWRDGALSTTLALFQLDLYNRRIADPVRPGFFDLTGLERNRGLELGVAGRLAGDWFVRGGIGWQHARVVD AEPKYAGKRSAGVSASNGSLFVGHAPLRGFFAELGLVYEGARYADRDNLLELPAYVRWDGKAGYRTRDFEVTLAAVNLTD RDYYANATGLAQIMPGTPRTFTLTAAYKF >Mature_749_residues MNANDCRFQLHKIKFTQQHKPPRNGHVRQSLSHPQISMSKRQISGRRFPVLALSLCSIAGVASSPAPAAEFDDELPAVEV RSRRHPNDPRAESVSTATRTASDPRDVPQTIDSVPVEETLSYGGRTLADALAGVPGVSNTSDTRFDSFRIRGFSAAGDLL LDGMRDDAQYVRSLSNIERVEVLKGPAAALYGRGSGGGVINRITKQPLPENFGHLSAATGSYGRLGASVDLNRMLSSAWS VRLNAGREHAGSFRDHVDSTRQYVAPSIKWHDARRSWLLQFEYDAYRRVPDRGMPAPVAALDAAGKPFAFSLPSAPRATF FGAAGRDTIRDENMNWRSVFTHALDGDWELRHTLGVLNLRSTFDNTYVTQSYVAKPRDYRHVQRARYLQDMTHLNVQTGV ELGGKVATGPALHHLLFGIEYGWQKRAPTLWQADAAPIPVTGPDRFALVGSTPRPYAMNRHRVSDYAIFAQDRVDLGRAW KLLGGLRGERFDVDSTNALNGLHARRTTAAWSPRLGVVWSPVGTHSLYASYSKNFAPVGGDLIGITPDARGNANDLGPQY TRQYEIGVKSDWRDGALSTTLALFQLDLYNRRIADPVRPGFFDLTGLERNRGLELGVAGRLAGDWFVRGGIGWQHARVVD AEPKYAGKRSAGVSASNGSLFVGHAPLRGFFAELGLVYEGARYADRDNLLELPAYVRWDGKAGYRTRDFEVTLAAVNLTD RDYYANATGLAQIMPGTPRTFTLTAAYKF
Specific function: Involved in the active transport across the outer membrane of iron complexed with catecholate siderophores such as dihydroxybenzoylserine and dihydroxybenzoate. It derives its energy for transport by interacting with the trans-periplasmic membrane protein
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=786, Percent_Identity=25.4452926208651, Blast_Score=168, Evalue=1e-42, Organism=Escherichia coli, GI1786344, Length=748, Percent_Identity=26.0695187165775, Blast_Score=156, Evalue=4e-39, Organism=Escherichia coli, GI1790743, Length=304, Percent_Identity=24.0131578947368, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 82440; Mature: 82440
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNANDCRFQLHKIKFTQQHKPPRNGHVRQSLSHPQISMSKRQISGRRFPVLALSLCSIAG CCCCCCEEEEEEEEEHHCCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC VASSPAPAAEFDDELPAVEVRSRRHPNDPRAESVSTATRTASDPRDVPQTIDSVPVEETL CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH SYGGRTLADALAGVPGVSNTSDTRFDSFRIRGFSAAGDLLLDGMRDDAQYVRSLSNIERV HCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCHHHHHHHHHHCCHHH EVLKGPAAALYGRGSGGGVINRITKQPLPENFGHLSAATGSYGRLGASVDLNRMLSSAWS HHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHE VRLNAGREHAGSFRDHVDSTRQYVAPSIKWHDARRSWLLQFEYDAYRRVPDRGMPAPVAA EEECCCCHHCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEEECHHHHCCCCCCCCCCHHH LDAAGKPFAFSLPSAPRATFFGAAGRDTIRDENMNWRSVFTHALDGDWELRHTLGVLNLR HHCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHHHEEHH STFDNTYVTQSYVAKPRDYRHVQRARYLQDMTHLNVQTGVELGGKVATGPALHHLLFGIE HHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCEECCCHHHHHHHHHHH YGWQKRAPTLWQADAAPIPVTGPDRFALVGSTPRPYAMNRHRVSDYAIFAQDRVDLGRAW CCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHH KLLGGLRGERFDVDSTNALNGLHARRTTAAWSPRLGVVWSPVGTHSLYASYSKNFAPVGG HHHHCCCCCEECCCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCC DLIGITPDARGNANDLGPQYTRQYEIGVKSDWRDGALSTTLALFQLDLYNRRIADPVRPG CEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC FFDLTGLERNRGLELGVAGRLAGDWFVRGGIGWQHARVVDAEPKYAGKRSAGVSASNGSL CEEECCCCCCCCCEEEECCEECCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCE FVGHAPLRGFFAELGLVYEGARYADRDNLLELPAYVRWDGKAGYRTRDFEVTLAAVNLTD EEECCHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCEEECEEEEEEEEEECC RDYYANATGLAQIMPGTPRTFTLTAAYKF CCCCCCCCCHHEECCCCCCEEEEEEEECC >Mature Secondary Structure MNANDCRFQLHKIKFTQQHKPPRNGHVRQSLSHPQISMSKRQISGRRFPVLALSLCSIAG CCCCCCEEEEEEEEEHHCCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC VASSPAPAAEFDDELPAVEVRSRRHPNDPRAESVSTATRTASDPRDVPQTIDSVPVEETL CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH SYGGRTLADALAGVPGVSNTSDTRFDSFRIRGFSAAGDLLLDGMRDDAQYVRSLSNIERV HCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCHHHHHHHHHHCCHHH EVLKGPAAALYGRGSGGGVINRITKQPLPENFGHLSAATGSYGRLGASVDLNRMLSSAWS HHHCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHE VRLNAGREHAGSFRDHVDSTRQYVAPSIKWHDARRSWLLQFEYDAYRRVPDRGMPAPVAA EEECCCCHHCCHHHHHHHHHHHHHCCCCEEECCCCEEEEEEECHHHHCCCCCCCCCCHHH LDAAGKPFAFSLPSAPRATFFGAAGRDTIRDENMNWRSVFTHALDGDWELRHTLGVLNLR HHCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHHHEEHH STFDNTYVTQSYVAKPRDYRHVQRARYLQDMTHLNVQTGVELGGKVATGPALHHLLFGIE HHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCEECCCHHHHHHHHHHH YGWQKRAPTLWQADAAPIPVTGPDRFALVGSTPRPYAMNRHRVSDYAIFAQDRVDLGRAW CCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHH KLLGGLRGERFDVDSTNALNGLHARRTTAAWSPRLGVVWSPVGTHSLYASYSKNFAPVGG HHHHCCCCCEECCCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCCCC DLIGITPDARGNANDLGPQYTRQYEIGVKSDWRDGALSTTLALFQLDLYNRRIADPVRPG CEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC FFDLTGLERNRGLELGVAGRLAGDWFVRGGIGWQHARVVDAEPKYAGKRSAGVSASNGSL CEEECCCCCCCCCEEEECCEECCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCE FVGHAPLRGFFAELGLVYEGARYADRDNLLELPAYVRWDGKAGYRTRDFEVTLAAVNLTD EEECCHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEECCCCCCEEECEEEEEEEEEECC RDYYANATGLAQIMPGTPRTFTLTAAYKF CCCCCCCCCHHEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]