| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is 107022146
Identifier: 107022146
GI number: 107022146
Start: 637685
End: 638824
Strand: Reverse
Name: 107022146
Synonym: Bcen_0589
Alternate gene names: NA
Gene position: 638824-637685 (Counterclockwise)
Preceding gene: 107022153
Following gene: 107022145
Centisome position: 19.39
GC content: 68.16
Gene sequence:
>1140_bases ATGCCGCCCCTTCGCGCCGCCCCGATGCGCCGCGCCCAGCGCCAAGTCGCAGCGCTGCTGGCCGGCCTTGCCTGCCTCGC GTCCGCATCGGCGTTTGCCGCGCCGCTGCCGGTGAACGAACTCGTCGTACCGCCCGGCTTCCATATAGACGTGCTGACCG ACGCCGTCCCGGCCGCGCGCGAAATGGCGTGGTCGCCACGCGGCATCCTGTATGTCGGCTCGCGGGACGGCCGCGTCCAC GCGTTCGTCATGCACGAGGGCCGGATCAATGCGCACTATGTCGTCGCGTTCGGGCTCGACCTGCCCGTCGGCGTCGCCTA CCGCGACGGCGCCCTCTATATATCCGCCGTCTCGCGCATCCTGCGCCTCGATCATATCGACGACCGGCTCGCAAAACCGC CCGCCCCCGTCGTCGTGACCGACGCGCTGCCGACCGACCACCATCACGGCTGGAAATTCATCGCGTTCGGCCCCGACGGC AAGCTGTACGTGCCGACCGGCGCGCCGTGCAATGTCTGCCTCCCCGATCGCAATCGCTACGCGATCATCGCGCGGATGAA TGCCGACGGCAGCGGACGCGAAGTGGTCGCCCGCGGCATACGCAATACGGTCGGCTTTGCATGGCACCCGGAGTCGGGCG AGCTGTGGTTCACCGACAACGGGCGCGACATGATGGGCGACGACGTACCAGACGACAAGCTGAACCGCACGCCGCGCGCC GGCCTCGATTTCGGCTTTCCATACTGCCACGGCGGCGATACGCCCGACCCCGAATTCGGCAGCGCCGACGTCTGCCGACG TTACGTGCCGCCCGTCCTGAAACTCGGCGCGCACGTCGCGGCGCTCGGGATGCGCTTCTACACCGGGCCGATGTTTCCGG CGTCGTATCGCAATAATGTCTTCATTGCCGAACACGGCTCGTGGAACCGCAGCACGAAGGTCGGCTACCGCGTGATGCGC GTGGTCGTCTCGGCGAACGGCAGCCACGCTCAGCAGACGCCGTTCGTCACGGGCTGGCTGCGGCCCGACGGCACGGTATG GGGACGCCCGGCCGATGTATTGCCGCTGCCGGACGGATCGCTGCTCGTCAGCGACGATTACGCGGGCGCGATCTACCGCG TGACTTATGCGGCACCTTGA
Upstream 100 bases:
>100_bases GCCGGAAACCAGAGGTACAACAAACACTTACGCGTAAAAAACCGCGGACGGCCCGTCCGCCGGGCATACAATCGTCGTGT CCAGGACGTTCCCGACCGTC
Downstream 100 bases:
>100_bases CGCAGCCGAGGGGTGACCGGGCCCGACCGGGCATCGTAGAATGCGTGCCGGGCCGCGCGCCCGCGCCGGCCTGCCGGCCC CGCCCATGCCAACGACAACA
Product: glucose/sorbosone dehydrogenase-like
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MPPLRAAPMRRAQRQVAALLAGLACLASASAFAAPLPVNELVVPPGFHIDVLTDAVPAAREMAWSPRGILYVGSRDGRVH AFVMHEGRINAHYVVAFGLDLPVGVAYRDGALYISAVSRILRLDHIDDRLAKPPAPVVVTDALPTDHHHGWKFIAFGPDG KLYVPTGAPCNVCLPDRNRYAIIARMNADGSGREVVARGIRNTVGFAWHPESGELWFTDNGRDMMGDDVPDDKLNRTPRA GLDFGFPYCHGGDTPDPEFGSADVCRRYVPPVLKLGAHVAALGMRFYTGPMFPASYRNNVFIAEHGSWNRSTKVGYRVMR VVVSANGSHAQQTPFVTGWLRPDGTVWGRPADVLPLPDGSLLVSDDYAGAIYRVTYAAP
Sequences:
>Translated_379_residues MPPLRAAPMRRAQRQVAALLAGLACLASASAFAAPLPVNELVVPPGFHIDVLTDAVPAAREMAWSPRGILYVGSRDGRVH AFVMHEGRINAHYVVAFGLDLPVGVAYRDGALYISAVSRILRLDHIDDRLAKPPAPVVVTDALPTDHHHGWKFIAFGPDG KLYVPTGAPCNVCLPDRNRYAIIARMNADGSGREVVARGIRNTVGFAWHPESGELWFTDNGRDMMGDDVPDDKLNRTPRA GLDFGFPYCHGGDTPDPEFGSADVCRRYVPPVLKLGAHVAALGMRFYTGPMFPASYRNNVFIAEHGSWNRSTKVGYRVMR VVVSANGSHAQQTPFVTGWLRPDGTVWGRPADVLPLPDGSLLVSDDYAGAIYRVTYAAP >Mature_378_residues PPLRAAPMRRAQRQVAALLAGLACLASASAFAAPLPVNELVVPPGFHIDVLTDAVPAAREMAWSPRGILYVGSRDGRVHA FVMHEGRINAHYVVAFGLDLPVGVAYRDGALYISAVSRILRLDHIDDRLAKPPAPVVVTDALPTDHHHGWKFIAFGPDGK LYVPTGAPCNVCLPDRNRYAIIARMNADGSGREVVARGIRNTVGFAWHPESGELWFTDNGRDMMGDDVPDDKLNRTPRAG LDFGFPYCHGGDTPDPEFGSADVCRRYVPPVLKLGAHVAALGMRFYTGPMFPASYRNNVFIAEHGSWNRSTKVGYRVMRV VVSANGSHAQQTPFVTGWLRPDGTVWGRPADVLPLPDGSLLVSDDYAGAIYRVTYAAP
Specific function: Unknown
COG id: COG2133
COG function: function code G; Glucose/sorbosone dehydrogenases
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To A.liquefaciens L-sorbosone dehydrogenase [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR012938 - InterPro: IPR011041 [H]
Pfam domain/function: PF07995 GSDH [H]
EC number: NA
Molecular weight: Translated: 41169; Mature: 41038
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPLRAAPMRRAQRQVAALLAGLACLASASAFAAPLPVNELVVPPGFHIDVLTDAVPAAR CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEECCCCEEEEHHHCCCHHH EMAWSPRGILYVGSRDGRVHAFVMHEGRINAHYVVAFGLDLPVGVAYRDGALYISAVSRI HHCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEECCEEEHHHHHHH LRLDHIDDRLAKPPAPVVVTDALPTDHHHGWKFIAFGPDGKLYVPTGAPCNVCLPDRNRY HHHHCCHHHHCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEECCCCCCEEECCCCCCE AIIARMNADGSGREVVARGIRNTVGFAWHPESGELWFTDNGRDMMGDDVPDDKLNRTPRA EEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCCCCCCCHHHCCCCCC GLDFGFPYCHGGDTPDPEFGSADVCRRYVPPVLKLGAHVAALGMRFYTGPMFPASYRNNV CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE FIAEHGSWNRSTKVGYRVMRVVVSANGSHAQQTPFVTGWLRPDGTVWGRPADVLPLPDGS EEEECCCCCCCHHHHHEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCC LLVSDDYAGAIYRVTYAAP EEEECCCCCEEEEEEEECC >Mature Secondary Structure PPLRAAPMRRAQRQVAALLAGLACLASASAFAAPLPVNELVVPPGFHIDVLTDAVPAAR CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEEECCCCEEEEHHHCCCHHH EMAWSPRGILYVGSRDGRVHAFVMHEGRINAHYVVAFGLDLPVGVAYRDGALYISAVSRI HHCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEEEECCEEEHHHHHHH LRLDHIDDRLAKPPAPVVVTDALPTDHHHGWKFIAFGPDGKLYVPTGAPCNVCLPDRNRY HHHHCCHHHHCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEECCCCCCEEECCCCCCE AIIARMNADGSGREVVARGIRNTVGFAWHPESGELWFTDNGRDMMGDDVPDDKLNRTPRA EEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCCCCCCCHHHCCCCCC GLDFGFPYCHGGDTPDPEFGSADVCRRYVPPVLKLGAHVAALGMRFYTGPMFPASYRNNV CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE FIAEHGSWNRSTKVGYRVMRVVVSANGSHAQQTPFVTGWLRPDGTVWGRPADVLPLPDGS EEEECCCCCCCHHHHHEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCC LLVSDDYAGAIYRVTYAAP EEEECCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9403685 [H]