| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is 107022104
Identifier: 107022104
GI number: 107022104
Start: 590410
End: 591444
Strand: Reverse
Name: 107022104
Synonym: Bcen_0547
Alternate gene names: NA
Gene position: 591444-590410 (Counterclockwise)
Preceding gene: 107022106
Following gene: 107022101
Centisome position: 17.95
GC content: 71.59
Gene sequence:
>1035_bases ATGTCACGATTTGCGACGACATTTCCGCGCCGCGCCGGCACGGTCGACCGTGTCGCACGACGTACCCCTTTCATGATCCC ATCGCCCCTCGTCCCGGTCGAAGGCGCGCTCGCCCGCCCTCGCATCAACCCGCTCGATCAGGTCCCGCCGTTCGGTCGCG AATGGCGATTTCTCGGTGCCCCCGGTGCACGGTCCAGCAAGAACTGCCTTGCGACACTGACGACGTCCTGCATCGACGTC GACTGGCCGCACTCCGCATGCCGGTGGCAGCCACTGCCGGCGAGTGCGCTGCCGGCTTCTGGCGGGCTGCCTGCCCCGCC GGCTGCGGCCACCGGTCGGCGCTTGCGCCATCGCCGCCCTCGTGACCGGCGCGCGATGTACGCGCTCTACTGGAGCATCG GCGCACTCGGCATCATCGGCTGGCTGATCGGCACGTACGACCCGCCCGCGGGCTTCGGTCCCGCGTATGCGATTCAAGCG ACCGGCGGTGTGGCCGATCACGTCACGACGTCGACCGGCACCATACATATGGCCGCGACTCACCCGGCCACCTCGACGAA CGCCGTGCCGCAGCGCAAGGTCGCGGCGCCTGTCGCGAACACGATGAAAACGCCGCCCGCCACGCACCGCGCCCCGCTTC GCCCCGCATCGCTTCATCCGCAAACGGCGTCCGACATGCGGCACGCCGCGCCTGCGTCGCCCCGTCGGGCAACCGGCCAG CGCACGATGCCGGCACCGTCCCACACACCGGTCGTGCCGCGACTCGCCGCACATCCGCCGACCCAGCGTGCGCCGCTCCA GCGCGCTGCGACCAACGCCGGCACACACGATCGGCTCGCTCCGCCGCCGCGCACGGCAGACACGCGCGATACACGCGACT CGCTCGACGATCCGGCCACGCTGATCGCCATGGCGAACGCGCTGCGCGCCACGCAGCCGGCCCGCCCGGCGCACCCGAGC GCGACCGGTTTCGACTGGACGTCGCAACTGTCGCACCGCCGCGTGACCGACGTGCCGGACGCGTTCGCGCACTGA
Upstream 100 bases:
>100_bases CCTGTCACGACCGTCGCGGCATCCGCCTCGTACAAGTCGCCCCCAAAAAGGCACAAGAATCAGATTGATCTGATCGACCT GCCTTCGCCGGCTGACCACA
Downstream 100 bases:
>100_bases CGCCCGCGCAATAAAAAACCCGGCGAAGATCGCTTCGCCGGGTTTTCGTTCGTCTCGCTCCGTCCGTTCGACGAATCGTT ACTTGTGCATGGGCAGCCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 344; Mature: 343
Protein sequence:
>344_residues MSRFATTFPRRAGTVDRVARRTPFMIPSPLVPVEGALARPRINPLDQVPPFGREWRFLGAPGARSSKNCLATLTTSCIDV DWPHSACRWQPLPASALPASGGLPAPPAAATGRRLRHRRPRDRRAMYALYWSIGALGIIGWLIGTYDPPAGFGPAYAIQA TGGVADHVTTSTGTIHMAATHPATSTNAVPQRKVAAPVANTMKTPPATHRAPLRPASLHPQTASDMRHAAPASPRRATGQ RTMPAPSHTPVVPRLAAHPPTQRAPLQRAATNAGTHDRLAPPPRTADTRDTRDSLDDPATLIAMANALRATQPARPAHPS ATGFDWTSQLSHRRVTDVPDAFAH
Sequences:
>Translated_344_residues MSRFATTFPRRAGTVDRVARRTPFMIPSPLVPVEGALARPRINPLDQVPPFGREWRFLGAPGARSSKNCLATLTTSCIDV DWPHSACRWQPLPASALPASGGLPAPPAAATGRRLRHRRPRDRRAMYALYWSIGALGIIGWLIGTYDPPAGFGPAYAIQA TGGVADHVTTSTGTIHMAATHPATSTNAVPQRKVAAPVANTMKTPPATHRAPLRPASLHPQTASDMRHAAPASPRRATGQ RTMPAPSHTPVVPRLAAHPPTQRAPLQRAATNAGTHDRLAPPPRTADTRDTRDSLDDPATLIAMANALRATQPARPAHPS ATGFDWTSQLSHRRVTDVPDAFAH >Mature_343_residues SRFATTFPRRAGTVDRVARRTPFMIPSPLVPVEGALARPRINPLDQVPPFGREWRFLGAPGARSSKNCLATLTTSCIDVD WPHSACRWQPLPASALPASGGLPAPPAAATGRRLRHRRPRDRRAMYALYWSIGALGIIGWLIGTYDPPAGFGPAYAIQAT GGVADHVTTSTGTIHMAATHPATSTNAVPQRKVAAPVANTMKTPPATHRAPLRPASLHPQTASDMRHAAPASPRRATGQR TMPAPSHTPVVPRLAAHPPTQRAPLQRAATNAGTHDRLAPPPRTADTRDTRDSLDDPATLIAMANALRATQPARPAHPSA TGFDWTSQLSHRRVTDVPDAFAH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36777; Mature: 36646
Theoretical pI: Translated: 12.12; Mature: 12.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRFATTFPRRAGTVDRVARRTPFMIPSPLVPVEGALARPRINPLDQVPPFGREWRFLGA CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECC PGARSSKNCLATLTTSCIDVDWPHSACRWQPLPASALPASGGLPAPPAAATGRRLRHRRP CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCC RDRRAMYALYWSIGALGIIGWLIGTYDPPAGFGPAYAIQATGGVADHVTTSTGTIHMAAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHEECCCCEEEEEEC HPATSTNAVPQRKVAAPVANTMKTPPATHRAPLRPASLHPQTASDMRHAAPASPRRATGQ CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC RTMPAPSHTPVVPRLAAHPPTQRAPLQRAATNAGTHDRLAPPPRTADTRDTRDSLDDPAT CCCCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCHHH LIAMANALRATQPARPAHPSATGFDWTSQLSHRRVTDVPDAFAH HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHCC >Mature Secondary Structure SRFATTFPRRAGTVDRVARRTPFMIPSPLVPVEGALARPRINPLDQVPPFGREWRFLGA CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECC PGARSSKNCLATLTTSCIDVDWPHSACRWQPLPASALPASGGLPAPPAAATGRRLRHRRP CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCC RDRRAMYALYWSIGALGIIGWLIGTYDPPAGFGPAYAIQATGGVADHVTTSTGTIHMAAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHEECCCCEEEEEEC HPATSTNAVPQRKVAAPVANTMKTPPATHRAPLRPASLHPQTASDMRHAAPASPRRATGQ CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC RTMPAPSHTPVVPRLAAHPPTQRAPLQRAATNAGTHDRLAPPPRTADTRDTRDSLDDPAT CCCCCCCCCCCCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCHHH LIAMANALRATQPARPAHPSATGFDWTSQLSHRRVTDVPDAFAH HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA