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The map label for this gene is yafC [H]

Identifier: 107021901

GI number: 107021901

Start: 379018

End: 380001

Strand: Reverse

Name: yafC [H]

Synonym: Bcen_0343

Alternate gene names: 107021901

Gene position: 380001-379018 (Counterclockwise)

Preceding gene: 107021903

Following gene: 107021900

Centisome position: 11.53

GC content: 71.44

Gene sequence:

>984_bases
ATGAACCAGATTCAGACCATGCGTGTATTCGTCTGCGTCGCCGAGCAGCAAAGCTTCCGGCGCGCGGCGCACCATCTCGG
CGTGTCCAATGCGCTCGTCACGCGTTCGATCGCGATGCTCGAGGGCCACCTGAACACACGGCTGATCCATCGCACCACGC
GCAACCTGTCGCTCACCGAGGCCGGCGTGCGCTACCTCGATGGTTGCCGCGCGCTGCTCGAGGAATTCGACCACCTCGAA
TCGTCCGTCGCGCATGCCGTGCGCGAACCGGCCGGCACGCTGCGCGTCGTCGCGTCGGGGCTGCTGTCGCCGCTGGCGCT
GACGCCGCTCGTCAGCAGCTTCCGGCACCGCTACCCCGAGCTGCGCGTGCAGCTGACCGTCGCCGAAGGGCCGCTCGACG
TGCTCGATTCCGGCTACGACGTCGGCATCGTCACCGGCACCCGGCTCGACGGCAACCCGACGCTGATCGGCCATGCGCTC
GCGCCGAACCCGTTCGTCGCGTGCGCGGCGCCGGCCTATCTCGACCGCCGCGGCGAGCCGCGCGTGCCCGACGACCTGCC
GGGCCACGACTGGGTCACGCTCGCGCCGCACCAGCACGCGCCGACGTGGCAACTGGTCGGCCACGACGGCGTCGCCCATT
CGGTCACGGTGCGCCCGGCCTGCACGGTCAACCAGCTCGCGCTCGTCCAGGCGGCGGCCGTGGCCGGCGCCGGCATCGCG
GTGCTGCCCGAGCCGTGCGTCGCCGACGCGCTCAACCACGGCACGCTCGTGCGGCTGATGGCCGGCTACCGGATCGACGA
TCCCGACACGCAGTTGTCGCTCGTCTATCCGAACCGCCAGTACGTGCCGGCCCGCACCCGCAGCTTCGTCGAGCACGCGC
TCGAGCACTTCAGCGCGCCGGCCGCCCGCGAGCAGGCGGATTACGGCTTCCTGCGGCCGGTACGCGGCCCCGAACGCTCC
GACATCGTCACGGGGCTGCAGTAA

Upstream 100 bases:

>100_bases
TCGATACGAGGGCAAGCTGGAGCCGCGCGATGCGCTTTCGACGTTGCGCGGCGAAAAATCACAACCATAATCAATCAACC
GGGCCAGAAATACGCAAGCC

Downstream 100 bases:

>100_bases
ACTGCGCGCGTCAGCCATCGGAGGTGCAGCGTGCGCGTGATCCTGTTCAGCAGCCGGCAGTACGACGACGATTCGTTCAC
CGCCGCCAACCGGCAGTTCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MNQIQTMRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGVRYLDGCRALLEEFDHLE
SSVAHAVREPAGTLRVVASGLLSPLALTPLVSSFRHRYPELRVQLTVAEGPLDVLDSGYDVGIVTGTRLDGNPTLIGHAL
APNPFVACAAPAYLDRRGEPRVPDDLPGHDWVTLAPHQHAPTWQLVGHDGVAHSVTVRPACTVNQLALVQAAAVAGAGIA
VLPEPCVADALNHGTLVRLMAGYRIDDPDTQLSLVYPNRQYVPARTRSFVEHALEHFSAPAAREQADYGFLRPVRGPERS
DIVTGLQ

Sequences:

>Translated_327_residues
MNQIQTMRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGVRYLDGCRALLEEFDHLE
SSVAHAVREPAGTLRVVASGLLSPLALTPLVSSFRHRYPELRVQLTVAEGPLDVLDSGYDVGIVTGTRLDGNPTLIGHAL
APNPFVACAAPAYLDRRGEPRVPDDLPGHDWVTLAPHQHAPTWQLVGHDGVAHSVTVRPACTVNQLALVQAAAVAGAGIA
VLPEPCVADALNHGTLVRLMAGYRIDDPDTQLSLVYPNRQYVPARTRSFVEHALEHFSAPAAREQADYGFLRPVRGPERS
DIVTGLQ
>Mature_327_residues
MNQIQTMRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTEAGVRYLDGCRALLEEFDHLE
SSVAHAVREPAGTLRVVASGLLSPLALTPLVSSFRHRYPELRVQLTVAEGPLDVLDSGYDVGIVTGTRLDGNPTLIGHAL
APNPFVACAAPAYLDRRGEPRVPDDLPGHDWVTLAPHQHAPTWQLVGHDGVAHSVTVRPACTVNQLALVQAAAVAGAGIA
VLPEPCVADALNHGTLVRLMAGYRIDDPDTQLSLVYPNRQYVPARTRSFVEHALEHFSAPAAREQADYGFLRPVRGPERS
DIVTGLQ

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=33.003300330033, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=32.4232081911263, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=30.7692307692308, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789639, Length=321, Percent_Identity=29.2834890965732, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=28.7162162162162, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=28.2828282828283, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1789440, Length=260, Percent_Identity=28.8461538461538, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=28.6821705426357, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693105, Length=177, Percent_Identity=29.3785310734463, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788481, Length=260, Percent_Identity=26.1538461538462, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=302, Percent_Identity=25.4966887417219, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786713, Length=282, Percent_Identity=26.5957446808511, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788748, Length=165, Percent_Identity=29.6969696969697, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35490; Mature: 35490

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQIQTMRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTE
CCCHHEEEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEHHCCCCCHHH
AGVRYLDGCRALLEEFDHLESSVAHAVREPAGTLRVVASGLLSPLALTPLVSSFRHRYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LRVQLTVAEGPLDVLDSGYDVGIVTGTRLDGNPTLIGHALAPNPFVACAAPAYLDRRGEP
EEEEEEEECCCHHHHCCCCCEEEEECCEECCCCCEEEEECCCCCCEEECCCHHHHCCCCC
RVPDDLPGHDWVTLAPHQHAPTWQLVGHDGVAHSVTVRPACTVNQLALVQAAAVAGAGIA
CCCCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEE
VLPEPCVADALNHGTLVRLMAGYRIDDPDTQLSLVYPNRQYVPARTRSFVEHALEHFSAP
ECCCHHHHHHHCCCCEEEHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
AAREQADYGFLRPVRGPERSDIVTGLQ
CHHHHCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MNQIQTMRVFVCVAEQQSFRRAAHHLGVSNALVTRSIAMLEGHLNTRLIHRTTRNLSLTE
CCCHHEEEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEHHCCCCCHHH
AGVRYLDGCRALLEEFDHLESSVAHAVREPAGTLRVVASGLLSPLALTPLVSSFRHRYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LRVQLTVAEGPLDVLDSGYDVGIVTGTRLDGNPTLIGHALAPNPFVACAAPAYLDRRGEP
EEEEEEEECCCHHHHCCCCCEEEEECCEECCCCCEEEEECCCCCCEEECCCHHHHCCCCC
RVPDDLPGHDWVTLAPHQHAPTWQLVGHDGVAHSVTVRPACTVNQLALVQAAAVAGAGIA
CCCCCCCCCCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEE
VLPEPCVADALNHGTLVRLMAGYRIDDPDTQLSLVYPNRQYVPARTRSFVEHALEHFSAP
ECCCHHHHHHHCCCCEEEHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
AAREQADYGFLRPVRGPERSDIVTGLQ
CHHHHCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]