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The map label for this gene is nahR [H]

Identifier: 107021779

GI number: 107021779

Start: 233740

End: 234660

Strand: Reverse

Name: nahR [H]

Synonym: Bcen_0219

Alternate gene names: 107021779

Gene position: 234660-233740 (Counterclockwise)

Preceding gene: 107021781

Following gene: 107021775

Centisome position: 7.12

GC content: 72.86

Gene sequence:

>921_bases
ATGAATATGGATGATATCGCCGGGCTCGACCTGAACCTGCTGAAGGTGTTCGAGGCGCTGTACGAGGAAGGCGGCGCGAG
CCGCGCGGCGCTGCGGCTCGACCTCACGCAGTCGGCGGTCAGCGCGGCGCTCGGGCGGCTGCGCGTGATCTATGCCGATC
CGCTGTTCGTGCGCACCGGCCGCGGGCTCGCGCCGACGCCGCGCGCGGACGAACTGAAGCCGATCCTGTCCGATGCGCTC
GACCGCTGCCGCGAAAGCCTCGCGATCGCGGCCGACGGCGGCGACCGTGTCGGCCGCACGATCTCGATCGGGCTGTCCGA
CGATTTCGAGATCGCGCTCGGCCGTGCGTTGATCGACGCGGTCGCGCACGAAGCCGCCGGCATCCGGCTGATCTTCCGGC
AGACGCACAGCGGCATCGCCGGCGACGCGCTGCTGCGGCACGGCGTCGACCTCGCGATCGCGTCGGGCGGATTCTCGGCG
AACGGGCTCAGCCGGCGCGCGGTCGCGACCGGCGGCTATGCGTGCCTGATCGATCCGGCCGGCCGCGCGCGGGCGCCGCG
CACGCTGACGCTCGCCGAGTTCCTGCGGCGCGCCCATCTGCTCGTGTCGTCGGGCGGCGTGATCGGGATCGTCGACGAGG
CGCTGGCCGCGCTCGGCCACAAGCGGCGCGTCGCGGCATCGACCACGCATTTCGCCGCGCTGCCATACCTGCTCGCCGGC
TCCGACGCGGTCGCGACGATTCCCGCGCACGCGGCGCATGCGATCGCGCAGGCGACCTCGCTGCGTGCGCTCGCGTGCCC
GGTCGACCTGCCGCGCTATCCGGTCGAAATCGGCTGGCGCACAAGCACGCAGCGCGATCCGGCGATCGTGCGCGTACGCG
ACGCGATCGCCGCCTGCGTCGCACGCCTCGTCGCCCCATGA

Upstream 100 bases:

>100_bases
GAGGTGGACATGAAGGCGTCTCCGGTGAATGCGGTGAGTGGGATGACGCCATCTTTGTCGATATCATTTCATCGATCAAA
TCGATACAACGATAACTGAC

Downstream 100 bases:

>100_bases
AAAAGGCCCGGCCGGCTTCTTGTACCGGTCGGGCCTGCCGGGAGCGCTGCGCCCGCGCATCGAAGCGGGCACCGCGTAGC
CGGGGCGTGCGTTATTCGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MNMDDIAGLDLNLLKVFEALYEEGGASRAALRLDLTQSAVSAALGRLRVIYADPLFVRTGRGLAPTPRADELKPILSDAL
DRCRESLAIAADGGDRVGRTISIGLSDDFEIALGRALIDAVAHEAAGIRLIFRQTHSGIAGDALLRHGVDLAIASGGFSA
NGLSRRAVATGGYACLIDPAGRARAPRTLTLAEFLRRAHLLVSSGGVIGIVDEALAALGHKRRVAASTTHFAALPYLLAG
SDAVATIPAHAAHAIAQATSLRALACPVDLPRYPVEIGWRTSTQRDPAIVRVRDAIAACVARLVAP

Sequences:

>Translated_306_residues
MNMDDIAGLDLNLLKVFEALYEEGGASRAALRLDLTQSAVSAALGRLRVIYADPLFVRTGRGLAPTPRADELKPILSDAL
DRCRESLAIAADGGDRVGRTISIGLSDDFEIALGRALIDAVAHEAAGIRLIFRQTHSGIAGDALLRHGVDLAIASGGFSA
NGLSRRAVATGGYACLIDPAGRARAPRTLTLAEFLRRAHLLVSSGGVIGIVDEALAALGHKRRVAASTTHFAALPYLLAG
SDAVATIPAHAAHAIAQATSLRALACPVDLPRYPVEIGWRTSTQRDPAIVRVRDAIAACVARLVAP
>Mature_306_residues
MNMDDIAGLDLNLLKVFEALYEEGGASRAALRLDLTQSAVSAALGRLRVIYADPLFVRTGRGLAPTPRADELKPILSDAL
DRCRESLAIAADGGDRVGRTISIGLSDDFEIALGRALIDAVAHEAAGIRLIFRQTHSGIAGDALLRHGVDLAIASGGFSA
NGLSRRAVATGGYACLIDPAGRARAPRTLTLAEFLRRAHLLVSSGGVIGIVDEALAALGHKRRVAASTTHFAALPYLLAG
SDAVATIPAHAAHAIAQATSLRALACPVDLPRYPVEIGWRTSTQRDPAIVRVRDAIAACVARLVAP

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081766, Length=294, Percent_Identity=27.891156462585, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87081684, Length=150, Percent_Identity=30, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786820, Length=65, Percent_Identity=50.7692307692308, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31993; Mature: 31993

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMDDIAGLDLNLLKVFEALYEEGGASRAALRLDLTQSAVSAALGRLRVIYADPLFVRTG
CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHCEEEEEECCEEEECC
RGLAPTPRADELKPILSDALDRCRESLAIAADGGDRVGRTISIGLSDDFEIALGRALIDA
CCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHH
VAHEAAGIRLIFRQTHSGIAGDALLRHGVDLAIASGGFSANGLSRRAVATGGYACLIDPA
HHHHHCCEEEEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCEEECCCEEEEECCC
GRARAPRTLTLAEFLRRAHLLVSSGGVIGIVDEALAALGHKRRVAASTTHFAALPYLLAG
CCCCCCCEEHHHHHHHHHHHHEECCCEEEEHHHHHHHHCCCCHHHHCCHHHHHHHHHHCC
SDAVATIPAHAAHAIAQATSLRALACPVDLPRYPVEIGWRTSTQRDPAIVRVRDAIAACV
CCCEEECCHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH
ARLVAP
HHHHCC
>Mature Secondary Structure
MNMDDIAGLDLNLLKVFEALYEEGGASRAALRLDLTQSAVSAALGRLRVIYADPLFVRTG
CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHCEEEEEECCEEEECC
RGLAPTPRADELKPILSDALDRCRESLAIAADGGDRVGRTISIGLSDDFEIALGRALIDA
CCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHH
VAHEAAGIRLIFRQTHSGIAGDALLRHGVDLAIASGGFSANGLSRRAVATGGYACLIDPA
HHHHHCCEEEEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCEEECCCEEEEECCC
GRARAPRTLTLAEFLRRAHLLVSSGGVIGIVDEALAALGHKRRVAASTTHFAALPYLLAG
CCCCCCCEEHHHHHHHHHHHHEECCCEEEEHHHHHHHHCCCCHHHHCCHHHHHHHHHHCC
SDAVATIPAHAAHAIAQATSLRALACPVDLPRYPVEIGWRTSTQRDPAIVRVRDAIAACV
CCCEEECCHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH
ARLVAP
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]