| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is dcp [H]
Identifier: 103488636
GI number: 103488636
Start: 3309753
End: 3311939
Strand: Direct
Name: dcp [H]
Synonym: Sala_3161
Alternate gene names: 103488636
Gene position: 3309753-3311939 (Clockwise)
Preceding gene: 103488635
Following gene: 103488640
Centisome position: 98.94
GC content: 62.96
Gene sequence:
>2187_bases ATGCCGCAGAGCGCGCCCCGCCTTGCCCGCAAGCTGTCGATCATGCTTGCATCCACCGCGATGATCATGGGTTATGGCCC GATGAGCACCGCCATCGCCGCCGAACCCGCCGCCGCCAAAACCGTCCCCGCAGGACAGAACCCGCTGCTGCAACCCTGGA CCGGCCCCTATCAGGGGGTGCCGCCGTGGGACAAGCTCGACCCCGAACTTTTCCCCGACGCCTTTCAGAAGGCGATGGCC GAGGTGAAGGCCGAAGTGCAGGCGGTGATCGACAACCCCGCCGAACCGACGTTCGAAAACACCCACGTCCCGATGATGCT CGCGGGCGAGACGATGGAGCGCGTCTTTGCGATGTGGGGCGTGCAGACGTCGAACAAATCGAACGATCGCGTCGAGGAAA TCGACGCCGAATGGAGCCCGAGGCTCACCACCTTCTACACCGAGCTGTTCCTCGATCCCAAACTCTTCGCGCGCTACAAG GCGGTGTACGACAAGCGCCACACGAGCGGGCTCGACGCGCAGCAGATCCGCATCGTCGAGCGCAGCCATGACGAAATGGT GCGCGACGGCGCGAACCTGTCCCCGGCGGACAAGGAAAAGCTGGTCGCGATGAACGCGAAGCTCGAAGGCCTCTTCTCGG CTTTCTCCTCAAAGCTGCTCGGCGATGAAAAGCTCTACACCTTCGTCACCGACAAGGCCGAGCTCGACGGGCTCGACCCG GCTTTCGTCGCGTCGCTTGCCGCCGCGGCGGAGGCCAACGGCCATGCCGGTCACTGGGCGATCAAGAATACGCGCTCGTC GGCGCAACCGGTGCTGCAGAATGCGACCAACCGCAAATTGCGCGAAAAGGTCTGGCGCGCCTTCGTCGGCCGCGGCGACA ATGGTGACGCCAACGACACCAATGCGACGATCGCCGAAATCCTGAAGCTGCGCCAGCAGCGCGCCGAACTGCTCGGTTTC CCGACCCACGCGCATTACCGCATGGCCGACACGATGGCGAAGACGCCCGACAATGCGATGGGTCTGATGATGAAGGTGTG GCCCGCCGCCGTCGCGCGCGTGAAGGAAGAGGTCGCCGACATGCAGGCGATCGCCGACGCCGAAGCCAGGGCGGGCAAGG GGCCGAAGATCACCATCGAGCCATGGGACTATCGCTATTATGCCGAAAAGGTCCGCAAGGCGAAATATGACCTCGATGAA AGCGAGGTGAAGCCCTATCTTCAGCTCGACAAGCTGGTCGACGGCATGTTCTGGGCCGCGGGTCGGCTCTATGACCTCGG CTTCCGCGAGAATACGGGGCAGATTCCGGTTTTCGATCCCAAGGTGCGGACCTTCGAGGTTTATAACCTCAAGACGAACG AGAATGTCGGCGTCTTCTACCTCGACAATTTCGCGCGCGACGGAAAGCGGTCGGGCGCGTGGATGACGACCTATCGCAGC CAGCAGTCGCTCGGCGGCGAGCGCAACGTCCTTGCCTCGAACAACAATAATTTCACCGAAGGCGCACAGGGCGAACCGAC GCTCATCAGCATCGACGACGCCTCGACCTTGTTCCACGAGTTCGGCCACGGCATCCATTATCTGCTCCAGCAGGTCAAAT ATCCGGCGCTCGCCGGGGTGCCGCGCGATTTCGTCGAATATCCCAGCCAGGTGAACGAAAACTGGCTGATGACCCCCGAA GTGCTGTCGAAATATGCGACGCACTACCGGACGGGCGAGCCGATGCCGCAGGTGCTGGTCGACAAGATCCTCGCGAGCCA GAAGTTCAACCAGGGGTTCGAGACGGTCGAATATCTGGCGAGCGCGATCGTCGACATGAAGCTGCACGACCGCAAGACCC CGCCGACCGACGTCGACAGGTTCGAACGCGAGACGCTGGCCGAAATCGGAATGCCAAAGGAAATCGTCATGCGGCACCGC CTGCCGCAGTTCGGCCACCTGTTCAGCTCGGACGCCTATTCGGCGGGCTATTACTCCTACCTCTGGTCCGAAACGATGGA CGCCGACACCTGGGCGGCTTTCACCGAAGCCGGCGGCCCGTGGGACCGCAGCGTTGCCGACAGGTTCCGCACCATTTTGC TCATGACCGGCAACGAGACCGACCGCGCCGAGGCCTATCGCGCCTTCCGCGGCCGCGACCCCGACGTCAAGGCGCTGCTC GAAAAGCGCGGTTTCCCGACCGAATAA
Upstream 100 bases:
>100_bases TCGCGCGGCAACCCGAAACTTGCGCATCGCTGTCATATCTGGTTAATCCACCGCCCGACATGGTTTCGTCCGAAACCTTT TCCACCGGGAGAATCCGAAT
Downstream 100 bases:
>100_bases AGGGCAAGGCAAAGGGGGTCGTTTCGGGCCCCCTTTGTTTGTGCGGGCGACGCCGGCCCACGGTTGCCTCGATCATCGGG ATGACCGCTTTCGACCGAAG
Product: peptidyl-dipeptidase Dcp
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 728; Mature: 727
Protein sequence:
>728_residues MPQSAPRLARKLSIMLASTAMIMGYGPMSTAIAAEPAAAKTVPAGQNPLLQPWTGPYQGVPPWDKLDPELFPDAFQKAMA EVKAEVQAVIDNPAEPTFENTHVPMMLAGETMERVFAMWGVQTSNKSNDRVEEIDAEWSPRLTTFYTELFLDPKLFARYK AVYDKRHTSGLDAQQIRIVERSHDEMVRDGANLSPADKEKLVAMNAKLEGLFSAFSSKLLGDEKLYTFVTDKAELDGLDP AFVASLAAAAEANGHAGHWAIKNTRSSAQPVLQNATNRKLREKVWRAFVGRGDNGDANDTNATIAEILKLRQQRAELLGF PTHAHYRMADTMAKTPDNAMGLMMKVWPAAVARVKEEVADMQAIADAEARAGKGPKITIEPWDYRYYAEKVRKAKYDLDE SEVKPYLQLDKLVDGMFWAAGRLYDLGFRENTGQIPVFDPKVRTFEVYNLKTNENVGVFYLDNFARDGKRSGAWMTTYRS QQSLGGERNVLASNNNNFTEGAQGEPTLISIDDASTLFHEFGHGIHYLLQQVKYPALAGVPRDFVEYPSQVNENWLMTPE VLSKYATHYRTGEPMPQVLVDKILASQKFNQGFETVEYLASAIVDMKLHDRKTPPTDVDRFERETLAEIGMPKEIVMRHR LPQFGHLFSSDAYSAGYYSYLWSETMDADTWAAFTEAGGPWDRSVADRFRTILLMTGNETDRAEAYRAFRGRDPDVKALL EKRGFPTE
Sequences:
>Translated_728_residues MPQSAPRLARKLSIMLASTAMIMGYGPMSTAIAAEPAAAKTVPAGQNPLLQPWTGPYQGVPPWDKLDPELFPDAFQKAMA EVKAEVQAVIDNPAEPTFENTHVPMMLAGETMERVFAMWGVQTSNKSNDRVEEIDAEWSPRLTTFYTELFLDPKLFARYK AVYDKRHTSGLDAQQIRIVERSHDEMVRDGANLSPADKEKLVAMNAKLEGLFSAFSSKLLGDEKLYTFVTDKAELDGLDP AFVASLAAAAEANGHAGHWAIKNTRSSAQPVLQNATNRKLREKVWRAFVGRGDNGDANDTNATIAEILKLRQQRAELLGF PTHAHYRMADTMAKTPDNAMGLMMKVWPAAVARVKEEVADMQAIADAEARAGKGPKITIEPWDYRYYAEKVRKAKYDLDE SEVKPYLQLDKLVDGMFWAAGRLYDLGFRENTGQIPVFDPKVRTFEVYNLKTNENVGVFYLDNFARDGKRSGAWMTTYRS QQSLGGERNVLASNNNNFTEGAQGEPTLISIDDASTLFHEFGHGIHYLLQQVKYPALAGVPRDFVEYPSQVNENWLMTPE VLSKYATHYRTGEPMPQVLVDKILASQKFNQGFETVEYLASAIVDMKLHDRKTPPTDVDRFERETLAEIGMPKEIVMRHR LPQFGHLFSSDAYSAGYYSYLWSETMDADTWAAFTEAGGPWDRSVADRFRTILLMTGNETDRAEAYRAFRGRDPDVKALL EKRGFPTE >Mature_727_residues PQSAPRLARKLSIMLASTAMIMGYGPMSTAIAAEPAAAKTVPAGQNPLLQPWTGPYQGVPPWDKLDPELFPDAFQKAMAE VKAEVQAVIDNPAEPTFENTHVPMMLAGETMERVFAMWGVQTSNKSNDRVEEIDAEWSPRLTTFYTELFLDPKLFARYKA VYDKRHTSGLDAQQIRIVERSHDEMVRDGANLSPADKEKLVAMNAKLEGLFSAFSSKLLGDEKLYTFVTDKAELDGLDPA FVASLAAAAEANGHAGHWAIKNTRSSAQPVLQNATNRKLREKVWRAFVGRGDNGDANDTNATIAEILKLRQQRAELLGFP THAHYRMADTMAKTPDNAMGLMMKVWPAAVARVKEEVADMQAIADAEARAGKGPKITIEPWDYRYYAEKVRKAKYDLDES EVKPYLQLDKLVDGMFWAAGRLYDLGFRENTGQIPVFDPKVRTFEVYNLKTNENVGVFYLDNFARDGKRSGAWMTTYRSQ QSLGGERNVLASNNNNFTEGAQGEPTLISIDDASTLFHEFGHGIHYLLQQVKYPALAGVPRDFVEYPSQVNENWLMTPEV LSKYATHYRTGEPMPQVLVDKILASQKFNQGFETVEYLASAIVDMKLHDRKTPPTDVDRFERETLAEIGMPKEIVMRHRL PQFGHLFSSDAYSAGYYSYLWSETMDADTWAAFTEAGGPWDRSVADRFRTILLMTGNETDRAEAYRAFRGRDPDVKALLE KRGFPTE
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=597, Percent_Identity=28.9782244556114, Blast_Score=221, Evalue=1e-57, Organism=Homo sapiens, GI14149738, Length=695, Percent_Identity=25.8992805755396, Blast_Score=187, Evalue=4e-47, Organism=Homo sapiens, GI156105687, Length=548, Percent_Identity=24.4525547445255, Blast_Score=130, Evalue=3e-30, Organism=Escherichia coli, GI1787819, Length=686, Percent_Identity=38.0466472303207, Blast_Score=444, Evalue=1e-126, Organism=Escherichia coli, GI1789913, Length=692, Percent_Identity=31.6473988439306, Blast_Score=327, Evalue=2e-90, Organism=Caenorhabditis elegans, GI32565901, Length=425, Percent_Identity=24, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71999758, Length=584, Percent_Identity=20.7191780821918, Blast_Score=90, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6319793, Length=683, Percent_Identity=25.1830161054173, Blast_Score=194, Evalue=4e-50, Organism=Saccharomyces cerevisiae, GI6322715, Length=689, Percent_Identity=21.9158200290276, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI21356111, Length=584, Percent_Identity=25.1712328767123, Blast_Score=154, Evalue=2e-37, Organism=Drosophila melanogaster, GI20129717, Length=437, Percent_Identity=22.6544622425629, Blast_Score=100, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 81747; Mature: 81616
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQSAPRLARKLSIMLASTAMIMGYGPMSTAIAAEPAAAKTVPAGQNPLLQPWTGPYQGV CCCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PPWDKLDPELFPDAFQKAMAEVKAEVQAVIDNPAEPTFENTHVPMMLAGETMERVFAMWG CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHC VQTSNKSNDRVEEIDAEWSPRLTTFYTELFLDPKLFARYKAVYDKRHTSGLDAQQIRIVE CCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH RSHDEMVRDGANLSPADKEKLVAMNAKLEGLFSAFSSKLLGDEKLYTFVTDKAELDGLDP HHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHCCCCCH AFVASLAAAAEANGHAGHWAIKNTRSSAQPVLQNATNRKLREKVWRAFVGRGDNGDANDT HHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NATIAEILKLRQQRAELLGFPTHAHYRMADTMAKTPDNAMGLMMKVWPAAVARVKEEVAD HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH MQAIADAEARAGKGPKITIEPWDYRYYAEKVRKAKYDLDESEVKPYLQLDKLVDGMFWAA HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHC GRLYDLGFRENTGQIPVFDPKVRTFEVYNLKTNENVGVFYLDNFARDGKRSGAWMTTYRS CCEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCEEEEECCHHCCCCCCCCEEEEECC QQSLGGERNVLASNNNNFTEGAQGEPTLISIDDASTLFHEFGHGIHYLLQQVKYPALAGV HHHCCCCCCEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHCCHHHHHHHHHCCCHHCCC PRDFVEYPSQVNENWLMTPEVLSKYATHYRTGEPMPQVLVDKILASQKFNQGFETVEYLA CHHHHHCHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH SAIVDMKLHDRKTPPTDVDRFERETLAEIGMPKEIVMRHRLPQFGHLFSSDAYSAGYYSY HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHH LWSETMDADTWAAFTEAGGPWDRSVADRFRTILLMTGNETDRAEAYRAFRGRDPDVKALL HHHHCCCCHHHHHHHCCCCCCCHHHHHHHHEEEEEECCCCHHHHHHHHHCCCCCHHHHHH EKRGFPTE HHCCCCCC >Mature Secondary Structure PQSAPRLARKLSIMLASTAMIMGYGPMSTAIAAEPAAAKTVPAGQNPLLQPWTGPYQGV CCCHHHHHHHHHHHHHHHHHHEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC PPWDKLDPELFPDAFQKAMAEVKAEVQAVIDNPAEPTFENTHVPMMLAGETMERVFAMWG CCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHC VQTSNKSNDRVEEIDAEWSPRLTTFYTELFLDPKLFARYKAVYDKRHTSGLDAQQIRIVE CCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH RSHDEMVRDGANLSPADKEKLVAMNAKLEGLFSAFSSKLLGDEKLYTFVTDKAELDGLDP HHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHCCCCCH AFVASLAAAAEANGHAGHWAIKNTRSSAQPVLQNATNRKLREKVWRAFVGRGDNGDANDT HHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NATIAEILKLRQQRAELLGFPTHAHYRMADTMAKTPDNAMGLMMKVWPAAVARVKEEVAD HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH MQAIADAEARAGKGPKITIEPWDYRYYAEKVRKAKYDLDESEVKPYLQLDKLVDGMFWAA HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHC GRLYDLGFRENTGQIPVFDPKVRTFEVYNLKTNENVGVFYLDNFARDGKRSGAWMTTYRS CCEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCEEEEECCHHCCCCCCCCEEEEECC QQSLGGERNVLASNNNNFTEGAQGEPTLISIDDASTLFHEFGHGIHYLLQQVKYPALAGV HHHCCCCCCEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHCCHHHHHHHHHCCCHHCCC PRDFVEYPSQVNENWLMTPEVLSKYATHYRTGEPMPQVLVDKILASQKFNQGFETVEYLA CHHHHHCHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH SAIVDMKLHDRKTPPTDVDRFERETLAEIGMPKEIVMRHRLPQFGHLFSSDAYSAGYYSY HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHH LWSETMDADTWAAFTEAGGPWDRSVADRFRTILLMTGNETDRAEAYRAFRGRDPDVKALL HHHHCCCCHHHHHHHCCCCCCCHHHHHHHHEEEEEECCCCHHHHHHHHHCCCCCHHHHHH EKRGFPTE HHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]