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The map label for this gene is ycaN [H]

Identifier: 103488617

GI number: 103488617

Start: 3293700

End: 3294626

Strand: Direct

Name: ycaN [H]

Synonym: Sala_3142

Alternate gene names: 103488617

Gene position: 3293700-3294626 (Clockwise)

Preceding gene: 103488615

Following gene: 103488618

Centisome position: 98.46

GC content: 66.88

Gene sequence:

>927_bases
TTGAAGCAGGATTTAACAATCCCCCATGGGGCGCTCGACGGGATCGAAGCTTTCCTGCGCGTTGCGGAAAGGCGGAGCTT
TTCCGCCGCGGCGGCCGACCTCGGCGTCTCGCCCTCGGCGATCAGCCAGACGATCAAGGCGCTCGAGGCGCGCGTCGGCG
CGCCGCTGTTCATGCGCACCACGCGCAGCGTCGGGCTGACCCAGGCGGGCGAGATGTTCTTCGAACGCGCCGCACCTGCC
TATTCGGGGCTTGCCGACGCCTATGAGGCGGCGCGCAACCTCGGCAACCGTCCCGCGGGACGCTTGCGCATCAATCTGAT
GCGCGGCGCGGTGCAGCCGCTGTTCGAACCGATCATCGCGGGCTTTTGCGAAACCTATCCCGAAATCGAGCTTGAAATCT
ATGCCGACGACGCGCTGTCGGATCTGAGCGCGGGCGGGTTCGACGCCGGGGTGCGGATGGGCGAATCGCTCGACGCCGAT
GTCGTCGCGGTCCGGCTGACCGGCCCCTTTCGCTTCGTCGTCGCCGGCGCGCCGTCCTATTTCGCGCGCCATGGCCGCCC
CGCAACGCCCGAGGCGCTGCGCGAGCATCGCTGCGTCCGCTTTCGCCTCGCCACCGGCGCGCTGATGCCATGGACCTTTG
AAAAGGGGAATCGCGAGTTCGACGTCGCGGTGACCGGCCCGGTGATCGTCAACGACTGGAGCGCGTCGCTCGTCGCGATG
CGCACCGGTGTCGCGCTTGGCATGATGGCCGAACCGATGGCGACGGCGATGGTCGACGCGGGCGAAATCGAGCTGGTGCT
CACCGACTATGCCGCCTCGACCTCCGGCCTCTTTCTCTATTATCCCGGCCGCAAGCAGGTGATGCCCAAGCTGCGCGCCT
TCATCGACTATGTGCGCGACAATCTCCCCGACGACATAACCCGCTGA

Upstream 100 bases:

>100_bases
GAGAGCTTGTAGGACATGGGAGAGGTTCCTTTCGTTTCGTTGTGCAACCTTTATAGATGCGCTTGCGCACTTAGATAATC
CTCTATAATCTGCAAGTGCC

Downstream 100 bases:

>100_bases
CCCTTTGGCGCGCATCGCCTTGCCGCACAAACAAATCCCTTCATCGCCAGCAGAAAAATTGGGCTGGCGCGGCGCGAGGA
ATCGCGGCAGCAACTTGTCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MKQDLTIPHGALDGIEAFLRVAERRSFSAAAADLGVSPSAISQTIKALEARVGAPLFMRTTRSVGLTQAGEMFFERAAPA
YSGLADAYEAARNLGNRPAGRLRINLMRGAVQPLFEPIIAGFCETYPEIELEIYADDALSDLSAGGFDAGVRMGESLDAD
VVAVRLTGPFRFVVAGAPSYFARHGRPATPEALREHRCVRFRLATGALMPWTFEKGNREFDVAVTGPVIVNDWSASLVAM
RTGVALGMMAEPMATAMVDAGEIELVLTDYAASTSGLFLYYPGRKQVMPKLRAFIDYVRDNLPDDITR

Sequences:

>Translated_308_residues
MKQDLTIPHGALDGIEAFLRVAERRSFSAAAADLGVSPSAISQTIKALEARVGAPLFMRTTRSVGLTQAGEMFFERAAPA
YSGLADAYEAARNLGNRPAGRLRINLMRGAVQPLFEPIIAGFCETYPEIELEIYADDALSDLSAGGFDAGVRMGESLDAD
VVAVRLTGPFRFVVAGAPSYFARHGRPATPEALREHRCVRFRLATGALMPWTFEKGNREFDVAVTGPVIVNDWSASLVAM
RTGVALGMMAEPMATAMVDAGEIELVLTDYAASTSGLFLYYPGRKQVMPKLRAFIDYVRDNLPDDITR
>Mature_308_residues
MKQDLTIPHGALDGIEAFLRVAERRSFSAAAADLGVSPSAISQTIKALEARVGAPLFMRTTRSVGLTQAGEMFFERAAPA
YSGLADAYEAARNLGNRPAGRLRINLMRGAVQPLFEPIIAGFCETYPEIELEIYADDALSDLSAGGFDAGVRMGESLDAD
VVAVRLTGPFRFVVAGAPSYFARHGRPATPEALREHRCVRFRLATGALMPWTFEKGNREFDVAVTGPVIVNDWSASLVAM
RTGVALGMMAEPMATAMVDAGEIELVLTDYAASTSGLFLYYPGRKQVMPKLRAFIDYVRDNLPDDITR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=39.2226148409894, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=32.0422535211268, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=30.2405498281787, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=28.9198606271777, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=25.4180602006689, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=25.7627118644068, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=24.6478873239437, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789173, Length=291, Percent_Identity=26.1168384879725, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI157672245, Length=170, Percent_Identity=34.7058823529412, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=161, Percent_Identity=34.1614906832298, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788706, Length=306, Percent_Identity=24.1830065359477, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787601, Length=183, Percent_Identity=28.4153005464481, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1786713, Length=262, Percent_Identity=28.6259541984733, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=124, Percent_Identity=30.6451612903226, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33360; Mature: 33360

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQDLTIPHGALDGIEAFLRVAERRSFSAAAADLGVSPSAISQTIKALEARVGAPLFMRT
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEH
TRSVGLTQAGEMFFERAAPAYSGLADAYEAARNLGNRPAGRLRINLMRGAVQPLFEPIIA
HHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHH
GFCETYPEIELEIYADDALSDLSAGGFDAGVRMGESLDADVVAVRLTGPFRFVVAGAPSY
HHHCCCCCEEEEEEECCHHHHHCCCCCHHHHHCCCCCCCCEEEEEECCCEEEEEECCCHH
FARHGRPATPEALREHRCVRFRLATGALMPWTFEKGNREFDVAVTGPVIVNDWSASLVAM
HHHCCCCCCHHHHHHCCEEEEEEECCCCCCEEECCCCEEEEEEEECCEEEECCCHHHHHH
RTGVALGMMAEPMATAMVDAGEIELVLTDYAASTSGLFLYYPGRKQVMPKLRAFIDYVRD
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
NLPDDITR
CCCCCCCC
>Mature Secondary Structure
MKQDLTIPHGALDGIEAFLRVAERRSFSAAAADLGVSPSAISQTIKALEARVGAPLFMRT
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEH
TRSVGLTQAGEMFFERAAPAYSGLADAYEAARNLGNRPAGRLRINLMRGAVQPLFEPIIA
HHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHH
GFCETYPEIELEIYADDALSDLSAGGFDAGVRMGESLDADVVAVRLTGPFRFVVAGAPSY
HHHCCCCCEEEEEEECCHHHHHCCCCCHHHHHCCCCCCCCEEEEEECCCEEEEEECCCHH
FARHGRPATPEALREHRCVRFRLATGALMPWTFEKGNREFDVAVTGPVIVNDWSASLVAM
HHHCCCCCCHHHHHHCCEEEEEEECCCCCCEEECCCCEEEEEEEECCEEEECCCHHHHHH
RTGVALGMMAEPMATAMVDAGEIELVLTDYAASTSGLFLYYPGRKQVMPKLRAFIDYVRD
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
NLPDDITR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]