| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is folD
Identifier: 103488573
GI number: 103488573
Start: 3246516
End: 3247424
Strand: Direct
Name: folD
Synonym: Sala_3097
Alternate gene names: 103488573
Gene position: 3246516-3247424 (Clockwise)
Preceding gene: 103488572
Following gene: 103488574
Centisome position: 97.05
GC content: 70.63
Gene sequence:
>909_bases ATGACCGGTCCTGTTCCCGACGCCAGAGTGATCGATGGCAAGGCCTTTGCCGCGGGGCTGCGCGCGCGGATCGCCGACGC GGTTCCCGCCTTCCGCGCGGCGACGGGCCGCGCGCCGGGGCTTGCCGTCGTGCTGGTCGGCGACGATCCGGCGAGCGCGG TCTATGTCGGGTCAAAGGGCAAGGCGACCGTCGCGGCGGGCATGGCAAGCTTCGAGCACCGCCTGGCTGCGACGGCGACG CAGGATGAGGTCGAGGCGCTGCTTCGCCAGCTCAACGCCGACGAGGCGGTCGACGGCATCCTGCTGCAATTGCCGCTTCC CGGCCATCTCGACGAACAGGCGGCGGTCGCGACGATCGACCCCGACAAGGATGTCGACGGGCTGACCCCGGTCAGCGCGG GCCGCCTTGCGCTCGGCATTCCCGGCATGGTGCCCTGCACTCCCTATGGCTGCCTGCTGCTTCTCCAGGACCGGCTCGGC GATTTGTCGGGCAAGGATGCGATCGTCATCGGCCGCTCGATTCTGGTCGGCAAGCCGATGGGCCAATTGCTGCTCGGCGC CAACTGCACGGTGACGATGGCGCACAGCCGGACCAAAGACCTGCCCGCGCTTGTGCGGCGCGCCGACATCGTCGTCGCCG CGGTCGGCCGCGCCGAGATGGTGAAGGGCGACTGGATCAAGCCCGGCGCGATCGTCATCGACGTCGGCATCAACCGCCTC CCGCCTGCGGACGGCGCGGCAAAGGGGCGACTGGTGGGCGATGTCGATTATGCCGCGGCGCTCGGCGTCGCCGATGCGAT CACACCGGTGCCGGGCGGGGTCGGGCCGATGACCATTGCCTGCCTGCTCCGCAACACGCTCGTCGCCGCGCACCGCCGGG CGGGGCTGGCCGATCCGGAAGGGTTCTGA
Upstream 100 bases:
>100_bases TCTGACGCCGATGGTGGTGCTGATCCTGCTGATCATCCTGCAAGGGCCAGTGATGGCCTATCTCTACCGGCTCGGCATGC AGACGGGGATGGCCTGACGC
Downstream 100 bases:
>100_bases TGCGCCGGTTGCTCCTTTCAACAATTGCCATTTCCTTGCTGGCGGGCTGCGCGGGGCCGCGAGACGAGTTTCGCAACCGT CCGCTCGCCGCCAACCCCAG
Product: methylenetetrahydrofolate dehydrogenase (NADP+)
Products: NA
Alternate protein names: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase
Number of amino acids: Translated: 302; Mature: 301
Protein sequence:
>302_residues MTGPVPDARVIDGKAFAAGLRARIADAVPAFRAATGRAPGLAVVLVGDDPASAVYVGSKGKATVAAGMASFEHRLAATAT QDEVEALLRQLNADEAVDGILLQLPLPGHLDEQAAVATIDPDKDVDGLTPVSAGRLALGIPGMVPCTPYGCLLLLQDRLG DLSGKDAIVIGRSILVGKPMGQLLLGANCTVTMAHSRTKDLPALVRRADIVVAAVGRAEMVKGDWIKPGAIVIDVGINRL PPADGAAKGRLVGDVDYAAALGVADAITPVPGGVGPMTIACLLRNTLVAAHRRAGLADPEGF
Sequences:
>Translated_302_residues MTGPVPDARVIDGKAFAAGLRARIADAVPAFRAATGRAPGLAVVLVGDDPASAVYVGSKGKATVAAGMASFEHRLAATAT QDEVEALLRQLNADEAVDGILLQLPLPGHLDEQAAVATIDPDKDVDGLTPVSAGRLALGIPGMVPCTPYGCLLLLQDRLG DLSGKDAIVIGRSILVGKPMGQLLLGANCTVTMAHSRTKDLPALVRRADIVVAAVGRAEMVKGDWIKPGAIVIDVGINRL PPADGAAKGRLVGDVDYAAALGVADAITPVPGGVGPMTIACLLRNTLVAAHRRAGLADPEGF >Mature_301_residues TGPVPDARVIDGKAFAAGLRARIADAVPAFRAATGRAPGLAVVLVGDDPASAVYVGSKGKATVAAGMASFEHRLAATATQ DEVEALLRQLNADEAVDGILLQLPLPGHLDEQAAVATIDPDKDVDGLTPVSAGRLALGIPGMVPCTPYGCLLLLQDRLGD LSGKDAIVIGRSILVGKPMGQLLLGANCTVTMAHSRTKDLPALVRRADIVVAAVGRAEMVKGDWIKPGAIVIDVGINRLP PADGAAKGRLVGDVDYAAALGVADAITPVPGGVGPMTIACLLRNTLVAAHRRAGLADPEGF
Specific function: Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
COG id: COG0190
COG function: function code H; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family
Homologues:
Organism=Homo sapiens, GI222136639, Length=290, Percent_Identity=43.7931034482759, Blast_Score=231, Evalue=8e-61, Organism=Homo sapiens, GI94721354, Length=305, Percent_Identity=40, Blast_Score=196, Evalue=2e-50, Organism=Homo sapiens, GI222418558, Length=297, Percent_Identity=40.4040404040404, Blast_Score=191, Evalue=8e-49, Organism=Escherichia coli, GI1786741, Length=283, Percent_Identity=49.8233215547703, Blast_Score=253, Evalue=1e-68, Organism=Caenorhabditis elegans, GI17568735, Length=279, Percent_Identity=45.5197132616487, Blast_Score=215, Evalue=3e-56, Organism=Saccharomyces cerevisiae, GI6321643, Length=297, Percent_Identity=43.7710437710438, Blast_Score=233, Evalue=4e-62, Organism=Saccharomyces cerevisiae, GI6319558, Length=287, Percent_Identity=43.205574912892, Blast_Score=227, Evalue=2e-60, Organism=Saccharomyces cerevisiae, GI6322933, Length=308, Percent_Identity=24.6753246753247, Blast_Score=86, Evalue=8e-18, Organism=Drosophila melanogaster, GI62472483, Length=289, Percent_Identity=45.6747404844291, Blast_Score=235, Evalue=3e-62, Organism=Drosophila melanogaster, GI45551871, Length=289, Percent_Identity=45.6747404844291, Blast_Score=235, Evalue=3e-62, Organism=Drosophila melanogaster, GI24645718, Length=289, Percent_Identity=45.6747404844291, Blast_Score=234, Evalue=5e-62, Organism=Drosophila melanogaster, GI17137370, Length=289, Percent_Identity=45.6747404844291, Blast_Score=234, Evalue=5e-62, Organism=Drosophila melanogaster, GI17136816, Length=296, Percent_Identity=43.9189189189189, Blast_Score=225, Evalue=3e-59, Organism=Drosophila melanogaster, GI17136818, Length=296, Percent_Identity=43.9189189189189, Blast_Score=225, Evalue=3e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FOLD_SPHAL (Q1GNH1)
Other databases:
- EMBL: CP000356 - RefSeq: YP_618134.1 - ProteinModelPortal: Q1GNH1 - SMR: Q1GNH1 - GeneID: 4082833 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_3097 - NMPDR: fig|317655.9.peg.2949 - HOGENOM: HBG328751 - OMA: LSCINAG - BioCyc: SALA317655:SALA_3097-MONOMER - BRENDA: 1.5.1.5 - BRENDA: 3.5.4.9 - GO: GO:0005488 - HAMAP: MF_01576 - InterPro: IPR016040 - InterPro: IPR000672 - InterPro: IPR020630 - InterPro: IPR020867 - InterPro: IPR020631 - Gene3D: G3DSA:3.40.50.720 - PRINTS: PR00085
Pfam domain/function: PF00763 THF_DHG_CYH; PF02882 THF_DHG_CYH_C
EC number: =1.5.1.5; =3.5.4.9
Molecular weight: Translated: 30722; Mature: 30591
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS00766 THF_DHG_CYH_1; PS00767 THF_DHG_CYH_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGPVPDARVIDGKAFAAGLRARIADAVPAFRAATGRAPGLAVVLVGDDPASAVYVGSKG CCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECCCC KATVAAGMASFEHRLAATATQDEVEALLRQLNADEAVDGILLQLPLPGHLDEQAAVATID CEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCEEEEEC PDKDVDGLTPVSAGRLALGIPGMVPCTPYGCLLLLQDRLGDLSGKDAIVIGRSILVGKPM CCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECEEEECCCH GQLLLGANCTVTMAHSRTKDLPALVRRADIVVAAVGRAEMVKGDWIKPGAIVIDVGINRL HHHEECCCCEEEEECCCCCCHHHHHHHHCEEEEECCCHHHCCCCCCCCCEEEEECCCCCC PPADGAAKGRLVGDVDYAAALGVADAITPVPGGVGPMTIACLLRNTLVAAHRRAGLADPE CCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC GF CC >Mature Secondary Structure TGPVPDARVIDGKAFAAGLRARIADAVPAFRAATGRAPGLAVVLVGDDPASAVYVGSKG CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECCCC KATVAAGMASFEHRLAATATQDEVEALLRQLNADEAVDGILLQLPLPGHLDEQAAVATID CEEHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCEEEEEC PDKDVDGLTPVSAGRLALGIPGMVPCTPYGCLLLLQDRLGDLSGKDAIVIGRSILVGKPM CCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECEEEECCCH GQLLLGANCTVTMAHSRTKDLPALVRRADIVVAAVGRAEMVKGDWIKPGAIVIDVGINRL HHHEECCCCEEEEECCCCCCHHHHHHHHCEEEEECCCHHHCCCCCCCCCEEEEECCCCCC PPADGAAKGRLVGDVDYAAALGVADAITPVPGGVGPMTIACLLRNTLVAAHRRAGLADPE CCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC GF CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA