| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488564
Identifier: 103488564
GI number: 103488564
Start: 3239573
End: 3240559
Strand: Direct
Name: 103488564
Synonym: Sala_3088
Alternate gene names: NA
Gene position: 3239573-3240559 (Clockwise)
Preceding gene: 103488563
Following gene: 103488565
Centisome position: 96.84
GC content: 65.25
Gene sequence:
>987_bases ATGGGTGTTGTGCGTCAACTTCGGCAGATTTCCGAGGATGATACGGGGGTCGACGTCGCCTTCCGCGCCGACGTCCATGC CGGGCTGTCCCAGACGCCCAAGGCAATCCCCGCGCGCTGGTTCTATGACACAACGGGCTCGGCGCTGTTCGAGGATATCA CCGCGCTCCCCGAATATTATCCGACGCGCAGCGAGACGGATCTGTTGACGCGGCACGCCGCCGACATCGCCGCGACGATC GGGCCGGGCCGCGCGGTGGTCGAGCTGGGATCGGGCAGTTCGACCAAGACGCCGCTGCTCCTTGCAGCCATCGACCCCGC GGCCTATGTCCCCGTCGACATTTCGGGCGATTTCCTGCGGGACAGCGCCGAGGCGCTCGCGGCGCGCTTTCCGCGGCTCC CCGTCTATCCCGTCGAAGCCGACTTCACACAGAAGGTCGCGCTGCCGCGCGAAATCTGCGCGCTGCCCAAGCTTGGCTTC TTTCCCGGCTCGACGATCGGCAACATGGTCGCACGCACCGCGGTCGACCTGCTGCGCAACTGGCGCGCGGCGCTGGGCGA CGGGTCGCTGATGCTGATCGGCATCGACCGGATCAAGGATATTGCGGTGCTCGAACGCGCCTATGACGATCCGGCGGGCG TGACCGCGGCCTTCAACCTCAATCTGATCGAGCGCATCAACCGCGAGCTTGGCGGCGACATGGCGCTCGACAATTTCACG CACCGCGCGGTCTGGAACGACACGCATGCGCGCATCGAAATGCACCTTGTCGCCATGTGCGACATGGACTTCACCGTCGA TGGCCAAGCCTATCATATGGCAAAAGGCGAAACGATCCACAGCGAGAACAGCCATAAATATGGCCCGCGCGACGCCAATC TGCTGCTCCGCGCCGGCGGTTGGACTCCCATCGCGACGTGGGACGATGCCGACCCGGCCTTCGCGCTGATCCTTGCCGAA GCGACCGAGTTTCGCTCGGCCCCCTGA
Upstream 100 bases:
>100_bases GCCACCCCGCGCGGTCACATGCGCGCGACATACCGCAATTTCTTCTACCCCCACCAGCGCTGGCAGTTCACCGGCGTGCG GCTCGCAAAGGATCTCTGAC
Downstream 100 bases:
>100_bases TCCGCGCCTCTTGACGGAGACGGTCGATCACGTAGGGCAACCATCCATATCGCCATCCCGGCGAAGGCCGGGATCCCGCC GTTTCCGTAAGACGCACGGG
Product: hypothetical protein
Products: NA
Alternate protein names: S-Adenosyl-L-Methionine-Dependent Methyltransferase; S-Adenosyl-L-Methionine-Dependentmethyltransferase; Methyltransferase Type; Conserved Domain Protein; Conserved Protein
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MGVVRQLRQISEDDTGVDVAFRADVHAGLSQTPKAIPARWFYDTTGSALFEDITALPEYYPTRSETDLLTRHAADIAATI GPGRAVVELGSGSSTKTPLLLAAIDPAAYVPVDISGDFLRDSAEALAARFPRLPVYPVEADFTQKVALPREICALPKLGF FPGSTIGNMVARTAVDLLRNWRAALGDGSLMLIGIDRIKDIAVLERAYDDPAGVTAAFNLNLIERINRELGGDMALDNFT HRAVWNDTHARIEMHLVAMCDMDFTVDGQAYHMAKGETIHSENSHKYGPRDANLLLRAGGWTPIATWDDADPAFALILAE ATEFRSAP
Sequences:
>Translated_328_residues MGVVRQLRQISEDDTGVDVAFRADVHAGLSQTPKAIPARWFYDTTGSALFEDITALPEYYPTRSETDLLTRHAADIAATI GPGRAVVELGSGSSTKTPLLLAAIDPAAYVPVDISGDFLRDSAEALAARFPRLPVYPVEADFTQKVALPREICALPKLGF FPGSTIGNMVARTAVDLLRNWRAALGDGSLMLIGIDRIKDIAVLERAYDDPAGVTAAFNLNLIERINRELGGDMALDNFT HRAVWNDTHARIEMHLVAMCDMDFTVDGQAYHMAKGETIHSENSHKYGPRDANLLLRAGGWTPIATWDDADPAFALILAE ATEFRSAP >Mature_327_residues GVVRQLRQISEDDTGVDVAFRADVHAGLSQTPKAIPARWFYDTTGSALFEDITALPEYYPTRSETDLLTRHAADIAATIG PGRAVVELGSGSSTKTPLLLAAIDPAAYVPVDISGDFLRDSAEALAARFPRLPVYPVEADFTQKVALPREICALPKLGFF PGSTIGNMVARTAVDLLRNWRAALGDGSLMLIGIDRIKDIAVLERAYDDPAGVTAAFNLNLIERINRELGGDMALDNFTH RAVWNDTHARIEMHLVAMCDMDFTVDGQAYHMAKGETIHSENSHKYGPRDANLLLRAGGWTPIATWDDADPAFALILAEA TEFRSAP
Specific function: Unknown
COG id: COG4301
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35678; Mature: 35547
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVVRQLRQISEDDTGVDVAFRADVHAGLSQTPKAIPARWFYDTTGSALFEDITALPEYY CCHHHHHHHHCCCCCCCEEEEECCHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHC PTRSETDLLTRHAADIAATIGPGRAVVELGSGSSTKTPLLLAAIDPAAYVPVDISGDFLR CCCCCHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCHHHH DSAEALAARFPRLPVYPVEADFTQKVALPREICALPKLGFFPGSTIGNMVARTAVDLLRN HHHHHHHHHCCCCCEEECCCCCHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH WRAALGDGSLMLIGIDRIKDIAVLERAYDDPAGVTAAFNLNLIERINRELGGDMALDNFT HHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCCEECCCCH HRAVWNDTHARIEMHLVAMCDMDFTVDGQAYHMAKGETIHSENSHKYGPRDANLLLRAGG HHHEECCCHHEEEEEEEEEECCCEEECCCEEEEECCCEECCCCCCCCCCCCCCEEEEECC WTPIATWDDADPAFALILAEATEFRSAP CCEECCCCCCCCEEEEEEEHHHHHCCCC >Mature Secondary Structure GVVRQLRQISEDDTGVDVAFRADVHAGLSQTPKAIPARWFYDTTGSALFEDITALPEYY CHHHHHHHHCCCCCCCEEEEECCHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHC PTRSETDLLTRHAADIAATIGPGRAVVELGSGSSTKTPLLLAAIDPAAYVPVDISGDFLR CCCCCHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCEEEEEECCCEEEEEECCCHHHH DSAEALAARFPRLPVYPVEADFTQKVALPREICALPKLGFFPGSTIGNMVARTAVDLLRN HHHHHHHHHCCCCCEEECCCCCHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH WRAALGDGSLMLIGIDRIKDIAVLERAYDDPAGVTAAFNLNLIERINRELGGDMALDNFT HHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCCEECCCCH HRAVWNDTHARIEMHLVAMCDMDFTVDGQAYHMAKGETIHSENSHKYGPRDANLLLRAGG HHHEECCCHHEEEEEEEEEECCCEEECCCEEEEECCCEECCCCCCCCCCCCCCEEEEECC WTPIATWDDADPAFALILAEATEFRSAP CCEECCCCCCCCEEEEEEEHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA