Click here to switch to the map view.

The map label for this gene is 103488559

Identifier: 103488559

GI number: 103488559

Start: 3235551

End: 3236117

Strand: Reverse

Name: 103488559

Synonym: Sala_3083

Alternate gene names: NA

Gene position: 3236117-3235551 (Counterclockwise)

Preceding gene: 103488567

Following gene: 103488558

Centisome position: 96.74

GC content: 62.61

Gene sequence:

>567_bases
ATGTTCCATCCCGATCTTGCCCGGCATCCCGATAGCTGTCCGGCGCTCGTTCTCAACGCCGACTATACGCCGCTGAGCTA
TTATCCCTTGAGCCTCTGGCCCTGGCAGACCGCGGTGAAGGCGGTTTTCCTCGACCGCGTCACCATCGTCGAGAATTACG
AGCGCGAGATTCATTCGCCGACGCGGACGATGCCGATCCCCAGCGTCATTGCGCTGCGCCAATATGTGAAGCCGTCGGAG
CATCCCGCCTTCACGCGGTTCAACCTGTTCCTGCGCGACCGTTTTGCGTGCCAGTATTGCGGGTCGGGCAAGGATCTGAC
CTTCGATCATGTCGTGCCGCGGCGATTGGGCGGGCGCACGACGTGGGAGAATGTCACGACCGCCTGCGCCCCGTGCAACC
TGAAGAAGGGTGGCCGAACGCCACAACAGGCGCATATGCCGCTCCATCGCCAGCCGTGGCGCCCGACGAGCTGGCAGCTG
CAGGACAATGGCCGGGCGTTCCCGCCCAACTATCTGCACACGAGCTGGATCGACTGGCTGTACTGGGATGTTGAACTCGA
AGGCTGA

Upstream 100 bases:

>100_bases
CCTTGACGCCAGAATCTGATGCGGCATGTAATGATGGTGTCACGCGCGGGAGGCAGTGGCGCGCCATCCCGTGAAGAAAT
GGGGGCAGCGTTACCTAGCC

Downstream 100 bases:

>100_bases
CAGCGGCACGACGGGCGCGACAGCATGGGTTCACCTCGATGGCATTAGGCGCGCGCCAACCATCGGAAAAGGAGACACAT
CATGGTTCGCGTCACCCGAA

Product: HNH endonuclease

Products: NA

Alternate protein names: HNH Endonuclease Family Protein; Endonuclease; HNH Endonuclease Domain-Containing Protein; Restriction Endonuclease; HNH Endonuclease Domain Protein; Hnh Endonuclease; HNH Nuclease; McrA/HNH Family Nuclease; 5-Methylcytosine-Specific Restriction A; 5-Methylcytosine-Specific Restriction Protein; Nuclease; Restriction Endonuclease McrA/HNH Family; HNH EndonucleaseHNH Nuclease; HNH Family Endonuclease; LOW QUALITY PROTEIN Endonuclease; Hnh Endonuclease Domain Protein; 5-Methylcytosine-Specific Restriction Protein A

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MFHPDLARHPDSCPALVLNADYTPLSYYPLSLWPWQTAVKAVFLDRVTIVENYEREIHSPTRTMPIPSVIALRQYVKPSE
HPAFTRFNLFLRDRFACQYCGSGKDLTFDHVVPRRLGGRTTWENVTTACAPCNLKKGGRTPQQAHMPLHRQPWRPTSWQL
QDNGRAFPPNYLHTSWIDWLYWDVELEG

Sequences:

>Translated_188_residues
MFHPDLARHPDSCPALVLNADYTPLSYYPLSLWPWQTAVKAVFLDRVTIVENYEREIHSPTRTMPIPSVIALRQYVKPSE
HPAFTRFNLFLRDRFACQYCGSGKDLTFDHVVPRRLGGRTTWENVTTACAPCNLKKGGRTPQQAHMPLHRQPWRPTSWQL
QDNGRAFPPNYLHTSWIDWLYWDVELEG
>Mature_188_residues
MFHPDLARHPDSCPALVLNADYTPLSYYPLSLWPWQTAVKAVFLDRVTIVENYEREIHSPTRTMPIPSVIALRQYVKPSE
HPAFTRFNLFLRDRFACQYCGSGKDLTFDHVVPRRLGGRTTWENVTTACAPCNLKKGGRTPQQAHMPLHRQPWRPTSWQL
QDNGRAFPPNYLHTSWIDWLYWDVELEG

Specific function: Unknown

COG id: COG1403

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21906; Mature: 21906

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHPDLARHPDSCPALVLNADYTPLSYYPLSLWPWQTAVKAVFLDRVTIVENYEREIHSP
CCCCCCCCCCCCCCEEEEECCCCCCEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
TRTMPIPSVIALRQYVKPSEHPAFTRFNLFLRDRFACQYCGSGKDLTFDHVVPRRLGGRT
CCCCCCHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHEECCCCCCCCHHHHHHHHHCCCC
TWENVTTACAPCNLKKGGRTPQQAHMPLHRQPWRPTSWQLQDNGRAFPPNYLHTSWIDWL
CHHHCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHEEEEE
YWDVELEG
EEEEEECC
>Mature Secondary Structure
MFHPDLARHPDSCPALVLNADYTPLSYYPLSLWPWQTAVKAVFLDRVTIVENYEREIHSP
CCCCCCCCCCCCCCEEEEECCCCCCEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
TRTMPIPSVIALRQYVKPSEHPAFTRFNLFLRDRFACQYCGSGKDLTFDHVVPRRLGGRT
CCCCCCHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHEECCCCCCCCHHHHHHHHHCCCC
TWENVTTACAPCNLKKGGRTPQQAHMPLHRQPWRPTSWQLQDNGRAFPPNYLHTSWIDWL
CHHHCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHEEEEE
YWDVELEG
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA