| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488469
Identifier: 103488469
GI number: 103488469
Start: 3133374
End: 3133838
Strand: Reverse
Name: 103488469
Synonym: Sala_2992
Alternate gene names: NA
Gene position: 3133838-3133374 (Counterclockwise)
Preceding gene: 103488470
Following gene: 103488468
Centisome position: 93.68
GC content: 67.31
Gene sequence:
>465_bases ATGAAGATGTTTGGCAAAGTCGATGTCGGCGGCGGATTGTCCGATTTCTGGGCCTATATCCGCGAGCCGCGCCCGCACCG CTGGGCGGTCTGGGGCGTCGCGCTGGCGCTCACCTGGGTCGTGTTCAGCGGGGTCGAACAATATCTGATCCCCGTCGACA GGCCCAAGGCGCAGATCATCTATTTCGAAAACTGGACCGCCGACCGCAGCGCCGGGGAGATTCGCGCCGACTGGATCGCG CGCGCCAGGGAGACGACGCGCCGCAACGCCAGGAAGCGCGCCGAATATCAGCGCTTCGCCGACAGCCTGGGCATCGAATA TGATTCGACCGAGGCCGACAGGGTGACGCGCGAGACGCTGGGCGAAGAAGCCGCCGAAGCCGTCAAGCAAAGGCCCGCAC CGCCGCCGCGCTCGACGCTCGCCGAGCGCGCGGCGCGCGGGCCGCAGCCCGAAATCACCGACTGA
Upstream 100 bases:
>100_bases ATCCGTGATTGCATTTTTTGCAAGCGTCGCCGCTCCCGCCAATAGGGGTGCAATCGCGCGCCCTCTCGCCAATCGCGGCG ACTTCGCCTAAATTGCCGCC
Downstream 100 bases:
>100_bases CGTGGCGCTCCGCGCGCCCGGCGACACCGACTGGATGGCCGCCGCCGCCGGGCTGGCGCGCCGCGGTCGCCCGGCGTCGG CGCCCAATCCCAATGTCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MKMFGKVDVGGGLSDFWAYIREPRPHRWAVWGVALALTWVVFSGVEQYLIPVDRPKAQIIYFENWTADRSAGEIRADWIA RARETTRRNARKRAEYQRFADSLGIEYDSTEADRVTRETLGEEAAEAVKQRPAPPPRSTLAERAARGPQPEITD
Sequences:
>Translated_154_residues MKMFGKVDVGGGLSDFWAYIREPRPHRWAVWGVALALTWVVFSGVEQYLIPVDRPKAQIIYFENWTADRSAGEIRADWIA RARETTRRNARKRAEYQRFADSLGIEYDSTEADRVTRETLGEEAAEAVKQRPAPPPRSTLAERAARGPQPEITD >Mature_154_residues MKMFGKVDVGGGLSDFWAYIREPRPHRWAVWGVALALTWVVFSGVEQYLIPVDRPKAQIIYFENWTADRSAGEIRADWIA RARETTRRNARKRAEYQRFADSLGIEYDSTEADRVTRETLGEEAAEAVKQRPAPPPRSTLAERAARGPQPEITD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17563; Mature: 17563
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMFGKVDVGGGLSDFWAYIREPRPHRWAVWGVALALTWVVFSGVEQYLIPVDRPKAQII CCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE YFENWTADRSAGEIRADWIARARETTRRNARKRAEYQRFADSLGIEYDSTEADRVTRETL EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH GEEAAEAVKQRPAPPPRSTLAERAARGPQPEITD HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKMFGKVDVGGGLSDFWAYIREPRPHRWAVWGVALALTWVVFSGVEQYLIPVDRPKAQII CCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE YFENWTADRSAGEIRADWIARARETTRRNARKRAEYQRFADSLGIEYDSTEADRVTRETL EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH GEEAAEAVKQRPAPPPRSTLAERAARGPQPEITD HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA