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The map label for this gene is ribD [H]

Identifier: 103488468

GI number: 103488468

Start: 3132395

End: 3133372

Strand: Reverse

Name: ribD [H]

Synonym: Sala_2991

Alternate gene names: 103488468

Gene position: 3133372-3132395 (Counterclockwise)

Preceding gene: 103488469

Following gene: 103488467

Centisome position: 93.67

GC content: 73.93

Gene sequence:

>978_bases
GTGGCGCTCCGCGCGCCCGGCGACACCGACTGGATGGCCGCCGCCGCCGGGCTGGCGCGCCGCGGTCGCCCGGCGTCGGC
GCCCAATCCCAATGTCGGCTGCCTGATCGTCAAGGCGGACCAGGTGGTGGCGCGCGGCTGGACGCAAGCCGGCGGTCGCC
CGCACGGCGAAGCGGTGGCGCTGGCGGCGGCCGGGGTCGCCGCGCGCGGCGCGACCGCCTATGTCACGCTCGAACCCTGC
GTCCATGCCAGCGCGCGCGGCCCGGCGTGCAGCGATTTGCTGATTAGGGCGGGAGTCGCTCGCGTCGTCGTTGCGGTGCA
GGATCCCGACCCGCGCACCGACGGCGCGGGCATTGCGCGATTGCGCGCGGCGGGGATCGAGGTGACGGTCGACGTCCTCC
CCGCCGATGCCCGCGCGGCGATGGCGCCCTGGTGGACGCGGCAGACCATGGGGCGTCCATTTGTGACGCTCAAGCTCGCG
ACCTCGCTCGACGGCCGTATCGCACCGGCCGACGGATCGAGCCGCTGGATCACCGGCGACCGCGCGCGCGCGCACGGCCA
TCTCGAACGCGCCAGCCACGAGGCGATCCTCGTCGGGCGCGGGACGTTCGAGGCCGATGCACCGCGGCTCGACGTGCGCT
TGCCGGGGCTCGAAGATCGCAGCCCGAAGAAATTTGTCCTCACGCGCGGCGCGGCGCCCGAGGGCTGGACCGCCGTTGCC
TCGCCCGATGCCATCGAAGGCGTCGATTCGCTGCTCGTCGAAGGGGGCGCAGGCGCGGCGGCCGCCTTCCTTGCCGCCGA
CCGCGTCGACCGACTGCTCCTGTACCGCGCGCCGATCCTGATCGGCGACGGCAAGGCGGCGCTCGGCGACATCGGCCTGA
CCAGAATCGCCGCCGCGCACGGCCGCTGGCGCCTTGCCGACAGCCGGATGCTTGGCAGCGACCGGCTCGACGTCTACGAG
CGCGTCAGGACAATTTGA

Upstream 100 bases:

>100_bases
GAAGCCGCCGAAGCCGTCAAGCAAAGGCCCGCACCGCCGCCGCGCTCGACGCTCGCCGAGCGCGCGGCGCGCGGGCCGCA
GCCCGAAATCACCGACTGAC

Downstream 100 bases:

>100_bases
GGGGCTCCCATGTTCACCGGCATCATCACCGACATCGGCACCATCCGCAGCCGCGAGGATCGCGGCGACACGCGGCTCGT
CATCGCGACCGCCCATGACA

Product: riboflavin biosynthesis protein RibD

Products: NA

Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MALRAPGDTDWMAAAAGLARRGRPASAPNPNVGCLIVKADQVVARGWTQAGGRPHGEAVALAAAGVAARGATAYVTLEPC
VHASARGPACSDLLIRAGVARVVVAVQDPDPRTDGAGIARLRAAGIEVTVDVLPADARAAMAPWWTRQTMGRPFVTLKLA
TSLDGRIAPADGSSRWITGDRARAHGHLERASHEAILVGRGTFEADAPRLDVRLPGLEDRSPKKFVLTRGAAPEGWTAVA
SPDAIEGVDSLLVEGGAGAAAAFLAADRVDRLLLYRAPILIGDGKAALGDIGLTRIAAAHGRWRLADSRMLGSDRLDVYE
RVRTI

Sequences:

>Translated_325_residues
MALRAPGDTDWMAAAAGLARRGRPASAPNPNVGCLIVKADQVVARGWTQAGGRPHGEAVALAAAGVAARGATAYVTLEPC
VHASARGPACSDLLIRAGVARVVVAVQDPDPRTDGAGIARLRAAGIEVTVDVLPADARAAMAPWWTRQTMGRPFVTLKLA
TSLDGRIAPADGSSRWITGDRARAHGHLERASHEAILVGRGTFEADAPRLDVRLPGLEDRSPKKFVLTRGAAPEGWTAVA
SPDAIEGVDSLLVEGGAGAAAAFLAADRVDRLLLYRAPILIGDGKAALGDIGLTRIAAAHGRWRLADSRMLGSDRLDVYE
RVRTI
>Mature_324_residues
ALRAPGDTDWMAAAAGLARRGRPASAPNPNVGCLIVKADQVVARGWTQAGGRPHGEAVALAAAGVAARGATAYVTLEPCV
HASARGPACSDLLIRAGVARVVVAVQDPDPRTDGAGIARLRAAGIEVTVDVLPADARAAMAPWWTRQTMGRPFVTLKLAT
SLDGRIAPADGSSRWITGDRARAHGHLERASHEAILVGRGTFEADAPRLDVRLPGLEDRSPKKFVLTRGAAPEGWTAVAS
PDAIEGVDSLLVEGGAGAAAAFLAADRVDRLLLYRAPILIGDGKAALGDIGLTRIAAAHGRWRLADSRMLGSDRLDVYER
VRTI

Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]

COG id: COG0117

COG function: function code H; Pyrimidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the HTP reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786616, Length=359, Percent_Identity=37.883008356546, Blast_Score=199, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193
- InterPro:   IPR004794
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]

EC number: =3.5.4.26; =1.1.1.193 [H]

Molecular weight: Translated: 33872; Mature: 33741

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRAPGDTDWMAAAAGLARRGRPASAPNPNVGCLIVKADQVVARGWTQAGGRPHGEAVA
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHCCHHHCCCCCCCCEEE
LAAAGVAARGATAYVTLEPCVHASARGPACSDLLIRAGVARVVVAVQDPDPRTDGAGIAR
EEECCHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCCCCCCEEE
LRAAGIEVTVDVLPADARAAMAPWWTRQTMGRPFVTLKLATSLDGRIAPADGSSRWITGD
EEECCEEEEEEEECCCCHHHHCCCHHHHHCCCCEEEEEEEECCCCEEECCCCCCCEEECC
RARAHGHLERASHEAILVGRGTFEADAPRLDVRLPGLEDRSPKKFVLTRGAAPEGWTAVA
CHHHHCHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCEECC
SPDAIEGVDSLLVEGGAGAAAAFLAADRVDRLLLYRAPILIGDGKAALGDIGLTRIAAAH
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEHCCCEEEECCCHHHHHCCHHHHHHHC
GRWRLADSRMLGSDRLDVYERVRTI
CCEEEECCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
ALRAPGDTDWMAAAAGLARRGRPASAPNPNVGCLIVKADQVVARGWTQAGGRPHGEAVA
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHCCHHHCCCCCCCCEEE
LAAAGVAARGATAYVTLEPCVHASARGPACSDLLIRAGVARVVVAVQDPDPRTDGAGIAR
EEECCHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCCCCCCEEE
LRAAGIEVTVDVLPADARAAMAPWWTRQTMGRPFVTLKLATSLDGRIAPADGSSRWITGD
EEECCEEEEEEEECCCCHHHHCCCHHHHHCCCCEEEEEEEECCCCEEECCCCCCCEEECC
RARAHGHLERASHEAILVGRGTFEADAPRLDVRLPGLEDRSPKKFVLTRGAAPEGWTAVA
CHHHHCHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCEECC
SPDAIEGVDSLLVEGGAGAAAAFLAADRVDRLLLYRAPILIGDGKAALGDIGLTRIAAAH
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEHCCCEEEECCCHHHHHCCHHHHHHHC
GRWRLADSRMLGSDRLDVYERVRTI
CCEEEECCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]