| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488441
Identifier: 103488441
GI number: 103488441
Start: 3107860
End: 3109089
Strand: Direct
Name: 103488441
Synonym: Sala_2964
Alternate gene names: NA
Gene position: 3107860-3109089 (Clockwise)
Preceding gene: 103488440
Following gene: 103488442
Centisome position: 92.91
GC content: 71.54
Gene sequence:
>1230_bases ATGACCGATGCCGCCGCCGACCATGGCTTCAACCCGCGCTTGATCGCGGCGGTCGTCGCGATCGGCGTCGTCGCCTTCAT CGCGCTCTGGGCGCTGATCGCGCTGGGGCCGCAGCTCGGCAGCGGCAACGACGGCGGCGGCCATGCGCTGTCGAAGGCGG CGCCGGGCTATGCCGGGATCGTCGATCTGGCCGAGCGCGCGGGCGCCGAGGTCGAACTGCGGCGGCAGGTCGAACCGGGC CACGATTACGAGCATGACCCGCTCGTCATCCTGACCCCGACGATGCGCACGCCGACACAGGACATGCGCGATCTTCTGGC GGCGCAGGGCGATGCGCCCGTGCTCGTCATCCTCCCCAAATGGGCCGCGGCCCGCGCGGGCGCGAAGGCGCCGAAGCCCG GCTGGGTCGGCAGCGGTATGGCGCTGCCGCCGCCCGCGCGGCTGCTGCCCGAGGACGTCTTCGGCACCGTCAAGATCGGC CGCGCGCGCTGGGGCAATAACGATGCGCGCGGGCGCATCGGCGCGCGCGCCGTCCGCCTGATCGAACCCGGCCAGCTTCA TACGGTGCGCGGCGCCGGCCTCGATCCGCTGCTCGTCGCGTCGGACGGATCGGCACTCGTCGCGCGTCTGCGCGAGCGCA ATCTTTACATTCTCGCCGACCCCGACCTCGTCAACAATCTAGCCTTTGCGAGCGGCGCCAGAGCCGCCGCCGCGGCAAAC CTGCTCGACGCGATCGCCGAGGATGCCGGGGCCGACGGCCTCGCCTTCGACCTGACGCTCAATGGTTTCGGCGCGCAGCG CTCGCTGCTGCGCTTCGCGTTCGTCCCGCCCTTCATCGGCATCACCCTCTGCCTGATCGCCGCCGGGCTGTTCGCGCTGT GGCAGGCGTGGGCGCGCTTTGGCCCGGCACTCAAACCCGGCCGCGCGATCCCGGTGTCGAAGGCGGCGCTGATTGCGAAC AGCGCCGACCTCATCAAACAGGCGCGCCGCGAACTCGACGGCGCCGCTGCCTATGTGAAGAGCCAGCGCAGCGCGATCGC GCGGCGGCTGCACGCGCCACCGGGCCTCGACGACGAAGCGACCGACGCCTGGATCGACCGGCACCAGCGCGGCGGCGAGC CATTTTCCGCGCTCGCGCGGCGTCTGCCGCGCGCGCGCAGCACCCATGAGTTTCTTGCAGACGCGCAGGCGCTGCACGCC ATCAGGAAGGATCTACTCCGTGACAGCTGA
Upstream 100 bases:
>100_bases AAATCAGCCTGTTCGGCGGTCGCGCGATCGACGCGGGCGCGTGGGACGAGTGCCGCGCCGCCTATGCCGATCTCACCATC GCCAGAAATTGGGCGCGCGC
Downstream 100 bases:
>100_bases CATCCAGGGCGTTCAGGCGCTCGGCGCCGCGATCGAGGGCGAGGTCGCCAAGGCCGTGTTCGGGCAGGGGCCGCTCACCC GCATGGTGACGATCGCGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MTDAAADHGFNPRLIAAVVAIGVVAFIALWALIALGPQLGSGNDGGGHALSKAAPGYAGIVDLAERAGAEVELRRQVEPG HDYEHDPLVILTPTMRTPTQDMRDLLAAQGDAPVLVILPKWAAARAGAKAPKPGWVGSGMALPPPARLLPEDVFGTVKIG RARWGNNDARGRIGARAVRLIEPGQLHTVRGAGLDPLLVASDGSALVARLRERNLYILADPDLVNNLAFASGARAAAAAN LLDAIAEDAGADGLAFDLTLNGFGAQRSLLRFAFVPPFIGITLCLIAAGLFALWQAWARFGPALKPGRAIPVSKAALIAN SADLIKQARRELDGAAAYVKSQRSAIARRLHAPPGLDDEATDAWIDRHQRGGEPFSALARRLPRARSTHEFLADAQALHA IRKDLLRDS
Sequences:
>Translated_409_residues MTDAAADHGFNPRLIAAVVAIGVVAFIALWALIALGPQLGSGNDGGGHALSKAAPGYAGIVDLAERAGAEVELRRQVEPG HDYEHDPLVILTPTMRTPTQDMRDLLAAQGDAPVLVILPKWAAARAGAKAPKPGWVGSGMALPPPARLLPEDVFGTVKIG RARWGNNDARGRIGARAVRLIEPGQLHTVRGAGLDPLLVASDGSALVARLRERNLYILADPDLVNNLAFASGARAAAAAN LLDAIAEDAGADGLAFDLTLNGFGAQRSLLRFAFVPPFIGITLCLIAAGLFALWQAWARFGPALKPGRAIPVSKAALIAN SADLIKQARRELDGAAAYVKSQRSAIARRLHAPPGLDDEATDAWIDRHQRGGEPFSALARRLPRARSTHEFLADAQALHA IRKDLLRDS >Mature_408_residues TDAAADHGFNPRLIAAVVAIGVVAFIALWALIALGPQLGSGNDGGGHALSKAAPGYAGIVDLAERAGAEVELRRQVEPGH DYEHDPLVILTPTMRTPTQDMRDLLAAQGDAPVLVILPKWAAARAGAKAPKPGWVGSGMALPPPARLLPEDVFGTVKIGR ARWGNNDARGRIGARAVRLIEPGQLHTVRGAGLDPLLVASDGSALVARLRERNLYILADPDLVNNLAFASGARAAAAANL LDAIAEDAGADGLAFDLTLNGFGAQRSLLRFAFVPPFIGITLCLIAAGLFALWQAWARFGPALKPGRAIPVSKAALIANS ADLIKQARRELDGAAAYVKSQRSAIARRLHAPPGLDDEATDAWIDRHQRGGEPFSALARRLPRARSTHEFLADAQALHAI RKDLLRDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43129; Mature: 42998
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAAADHGFNPRLIAAVVAIGVVAFIALWALIALGPQLGSGNDGGGHALSKAAPGYAGI CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHH VDLAERAGAEVELRRQVEPGHDYEHDPLVILTPTMRTPTQDMRDLLAAQGDAPVLVILPK HHHHHHCCCCEEEHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECC WAAARAGAKAPKPGWVGSGMALPPPARLLPEDVFGTVKIGRARWGNNDARGRIGARAVRL HHHHHCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHEEECCCCCCCCCCCCCHHHHEEEE IEPGQLHTVRGAGLDPLLVASDGSALVARLRERNLYILADPDLVNNLAFASGARAAAAAN ECCCCEEEECCCCCCCEEEECCCHHHHHHHHHCCEEEEECCHHHHHHHHHCCCHHHHHHH LLDAIAEDAGADGLAFDLTLNGFGAQRSLLRFAFVPPFIGITLCLIAAGLFALWQAWARF HHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GPALKPGRAIPVSKAALIANSADLIKQARRELDGAAAYVKSQRSAIARRLHAPPGLDDEA CCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH TDAWIDRHQRGGEPFSALARRLPRARSTHEFLADAQALHAIRKDLLRDS HHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TDAAADHGFNPRLIAAVVAIGVVAFIALWALIALGPQLGSGNDGGGHALSKAAPGYAGI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHH VDLAERAGAEVELRRQVEPGHDYEHDPLVILTPTMRTPTQDMRDLLAAQGDAPVLVILPK HHHHHHCCCCEEEHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEECC WAAARAGAKAPKPGWVGSGMALPPPARLLPEDVFGTVKIGRARWGNNDARGRIGARAVRL HHHHHCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHEEECCCCCCCCCCCCCHHHHEEEE IEPGQLHTVRGAGLDPLLVASDGSALVARLRERNLYILADPDLVNNLAFASGARAAAAAN ECCCCEEEECCCCCCCEEEECCCHHHHHHHHHCCEEEEECCHHHHHHHHHCCCHHHHHHH LLDAIAEDAGADGLAFDLTLNGFGAQRSLLRFAFVPPFIGITLCLIAAGLFALWQAWARF HHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GPALKPGRAIPVSKAALIANSADLIKQARRELDGAAAYVKSQRSAIARRLHAPPGLDDEA CCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH TDAWIDRHQRGGEPFSALARRLPRARSTHEFLADAQALHAIRKDLLRDS HHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA