| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yjeS [H]
Identifier: 103488345
GI number: 103488345
Start: 3020190
End: 3021242
Strand: Direct
Name: yjeS [H]
Synonym: Sala_2868
Alternate gene names: 103488345
Gene position: 3020190-3021242 (Clockwise)
Preceding gene: 103488340
Following gene: 103488346
Centisome position: 90.29
GC content: 69.9
Gene sequence:
>1053_bases ATGGTTGCCGAAGCCTTGCCTTCCCTCGAAACCCGCCTGGAGGCGGCCGCACGCGCGCAGGGTTTCGTGGCTTTCGGCAT CGCCGCTGCCGACGCCGCGCCGCAAACGGCCGCGCGTTTGCGGCAGTGGCTCGCCGACGGACACCACGGCGGGATGATCT GGATGGAAAGCCGCGCCGAGCAGCGTGGATCGCCCAGGGGACTTTGGCCCGCGGTCCGCTCGGTGGTCGCGCTCGGCATG AGCTATGCCCCCGCGCTCGATCCGCTCGCGCTCGCCGACCAGCCGGACCGCGGCCGCATTTCGGTCTATGCGCAGGGCGC CGACTATCATGACGTCGTCAAAAAGGCGCTGAAGGCGACCGCGCGCTGGCTCGTTGCCGAGGCCCCGGACGCCGAGGTCA AGGTGTTCGTCGACACCGCACCGGTGATGGAAAAGCCGCTCGCGGCGGCGGCGGGGCTCGGCTGGCAGGGCAGGCACAGC AATCTCGTCAGCCGCGAGCATGGCAGCTGGTTGTTCCTGGGGGCGATTTACACGACACTCGACCTTGCGCCCTCGCGGGC CGGCCGCGACCGCTGCGGCAGTTGCACGGCGTGCCAGCAAGCCTGCCCGACCGACGCCTTTCCCGCGCCCTATCGGCTCG ATGCCCGGCGCTGTATCTCCTATCTCACGATCGAGCATGACGGGCCGATCCCGGACGAGTTCCGCCGCGCCATAGGCAAT CGCATCTATGGCTGCGACGATTGCCTCGCCGTGTGTCCGTGGAACAAATTTGCAGGCGCGGCGCACCGCCACCGCGCCTT TTTGCCGCGCGCCGAACTCGCGGCGCCGTCGCTTGCCGACCTGCTCGCGCTCGACGATGCGGGATTCCGCCAGGTCTTCG CCGGCTCGCCGATCAAGCGGATCGGGCGCGGGCGCATGGTGCGCAACGCGGCGATCGCGGCGGGGAACAGCGGCGATGCG CGCTTCGTCCCCGCGCTTCAAAGGCTGGCCGACGATGAATCGCCGATGGTCGCCGACGCCGCGCGCTGGGCGCTTGGCGA ACTAGGGTCCTGA
Upstream 100 bases:
>100_bases GAGGCCGTTCGCCTCGACGCTGAAATCGCTCAAATGCTGGTCCCCGATCGTCGCTCCCGCAGACTATGGCACGCTGCGAT GGCTCGCGTATAGAGCGCCG
Downstream 100 bases:
>100_bases CCCTAGAGCGCGATGACATGATATTGACCCACCGTGATTGCCCCCTGAAGTTCGTCGGCAAGAAGCGTCTCGCAGGACGG GCTGGTTGCCCGGACCAGAG
Product: 4Fe-4S cluster binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 350; Mature: 350
Protein sequence:
>350_residues MVAEALPSLETRLEAAARAQGFVAFGIAAADAAPQTAARLRQWLADGHHGGMIWMESRAEQRGSPRGLWPAVRSVVALGM SYAPALDPLALADQPDRGRISVYAQGADYHDVVKKALKATARWLVAEAPDAEVKVFVDTAPVMEKPLAAAAGLGWQGRHS NLVSREHGSWLFLGAIYTTLDLAPSRAGRDRCGSCTACQQACPTDAFPAPYRLDARRCISYLTIEHDGPIPDEFRRAIGN RIYGCDDCLAVCPWNKFAGAAHRHRAFLPRAELAAPSLADLLALDDAGFRQVFAGSPIKRIGRGRMVRNAAIAAGNSGDA RFVPALQRLADDESPMVADAARWALGELGS
Sequences:
>Translated_350_residues MVAEALPSLETRLEAAARAQGFVAFGIAAADAAPQTAARLRQWLADGHHGGMIWMESRAEQRGSPRGLWPAVRSVVALGM SYAPALDPLALADQPDRGRISVYAQGADYHDVVKKALKATARWLVAEAPDAEVKVFVDTAPVMEKPLAAAAGLGWQGRHS NLVSREHGSWLFLGAIYTTLDLAPSRAGRDRCGSCTACQQACPTDAFPAPYRLDARRCISYLTIEHDGPIPDEFRRAIGN RIYGCDDCLAVCPWNKFAGAAHRHRAFLPRAELAAPSLADLLALDDAGFRQVFAGSPIKRIGRGRMVRNAAIAAGNSGDA RFVPALQRLADDESPMVADAARWALGELGS >Mature_350_residues MVAEALPSLETRLEAAARAQGFVAFGIAAADAAPQTAARLRQWLADGHHGGMIWMESRAEQRGSPRGLWPAVRSVVALGM SYAPALDPLALADQPDRGRISVYAQGADYHDVVKKALKATARWLVAEAPDAEVKVFVDTAPVMEKPLAAAAGLGWQGRHS NLVSREHGSWLFLGAIYTTLDLAPSRAGRDRCGSCTACQQACPTDAFPAPYRLDARRCISYLTIEHDGPIPDEFRRAIGN RIYGCDDCLAVCPWNKFAGAAHRHRAFLPRAELAAPSLADLLALDDAGFRQVFAGSPIKRIGRGRMVRNAAIAAGNSGDA RFVPALQRLADDESPMVADAARWALGELGS
Specific function: Unknown
COG id: COG1600
COG function: function code C; Uncharacterized Fe-S protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]
Homologues:
Organism=Escherichia coli, GI1790608, Length=344, Percent_Identity=38.953488372093, Blast_Score=254, Evalue=8e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004453 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013542 - InterPro: IPR009051 [H]
Pfam domain/function: PF08331 DUF1730 [H]
EC number: NA
Molecular weight: Translated: 37517; Mature: 37517
Theoretical pI: Translated: 8.01; Mature: 8.01
Prosite motif: PS50077 HEAT_REPEAT ; PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAEALPSLETRLEAAARAQGFVAFGIAAADAAPQTAARLRQWLADGHHGGMIWMESRAE CCCHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCHHHHHHHHHHHHCCCCCCEEEECCHHH QRGSPRGLWPAVRSVVALGMSYAPALDPLALADQPDRGRISVYAQGADYHDVVKKALKAT HCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHH ARWLVAEAPDAEVKVFVDTAPVMEKPLAAAAGLGWQGRHSNLVSREHGSWLFLGAIYTTL HHHHEECCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEHHHHHHHH DLAPSRAGRDRCGSCTACQQACPTDAFPAPYRLDARRCISYLTIEHDGPIPDEFRRAIGN HCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHEEEECCCCCCHHHHHHHCC RIYGCDDCLAVCPWNKFAGAAHRHRAFLPRAELAAPSLADLLALDDAGFRQVFAGSPIKR CCCCCCCHHEECCCHHHHCHHHHHHHCCCHHHHCCCHHHHHHHHCCCCHHHHHCCCCHHH IGRGRMVRNAAIAAGNSGDARFVPALQRLADDESPMVADAARWALGELGS HHCCHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MVAEALPSLETRLEAAARAQGFVAFGIAAADAAPQTAARLRQWLADGHHGGMIWMESRAE CCCHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCHHHHHHHHHHHHCCCCCCEEEECCHHH QRGSPRGLWPAVRSVVALGMSYAPALDPLALADQPDRGRISVYAQGADYHDVVKKALKAT HCCCCCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHH ARWLVAEAPDAEVKVFVDTAPVMEKPLAAAAGLGWQGRHSNLVSREHGSWLFLGAIYTTL HHHHEECCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEHHHHHHHH DLAPSRAGRDRCGSCTACQQACPTDAFPAPYRLDARRCISYLTIEHDGPIPDEFRRAIGN HCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHEEEECCCCCCHHHHHHHCC RIYGCDDCLAVCPWNKFAGAAHRHRAFLPRAELAAPSLADLLALDDAGFRQVFAGSPIKR CCCCCCCHHEECCCHHHHCHHHHHHHCCCHHHHCCCHHHHHHHHCCCCHHHHHCCCCHHH IGRGRMVRNAAIAAGNSGDARFVPALQRLADDESPMVADAARWALGELGS HHCCHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]