Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488304

Identifier: 103488304

GI number: 103488304

Start: 2983598

End: 2984311

Strand: Direct

Name: 103488304

Synonym: Sala_2827

Alternate gene names: NA

Gene position: 2983598-2984311 (Clockwise)

Preceding gene: 103488272

Following gene: 103488305

Centisome position: 89.19

GC content: 65.13

Gene sequence:

>714_bases
TTGCCCCTCCTCCTTCCACCCCCTATGCGCCGCCCCATGCCGCCGCCGCTCGACCCTATCGACAGCTGGATCTTCGATCT
CGACAACACGCTCTATCCGCCTTCGGCAAAGCTGTTCGACCTGATCGACGAACGCATGGGCGCGTTCATCATGCGGTTGC
TGGGTGTCGACGCGATCGAGGCGCGGCGTGTGCAGAAGCGATATTTCCACGACCATGGCACGACGATGGCGGGGCTGATG
CGCCATCACGGCGTCGATCCCGAAGAGTTTCTGCGCGACGTCCACGCGATCGACCTCGACCGGCTGACCCCCGACCCGCG
GCTGCGCGCCGGGCTCGAACGGCTGCCGGGACGCAGGCTGGTCTTCACCAACGCCGACGCCGATTATGCGGCGCGCGTGC
TCGAAGCGCGCGGGATCGCCGACCTGTTCGACGGCATCTGCGACATTCGCATCACCCGCTACACGCCCAAGCCGGAGGCA
ACCGCCTATGATGTGATGGTCGCGCACCTCGGCGTCGATCCGGTGCGGAGCCTGTTCGTCGAGGATATGGCGCGCAACCT
GACGCCTGCAAAAGCGCTCGGCATGACGACCGTGTGGCTGGACAATGGCAGCGAAAGCGGCCATCGGGACCACCTGCCCG
ACCATGTCGATTTCCACGCGACCGACATTGCCGACTGGCTCGACAACCTGCCTTCACCATGGGGAATCGCATGA

Upstream 100 bases:

>100_bases
CTCGCCCTGAGCAAAATCGCTTCAAACCTCGAACAGGTAATTAATGAGTCCTGACCCTAACCCATAGAGGTTGCCGTCCC
GTAAAACGGACGGGACGGCC

Downstream 100 bases:

>100_bases
CCGCCGACCTTCAAGCCACGATCGAAGCCGCATGGGACGCGCGCGACACATTGGGCCTCGCCACGACCGGTGCGGTGCGC
GAGGCGGTCGATACCGCGAT

Product: pyrimidine 5-nucleotidase

Products: NA

Alternate protein names: Hydrolase; HAD-Superfamily Hydrolase; HAD Family Pyrimidine 5-Nucleotidase; HAD Superfamily Hydrolase; Hydrolase Haloacid Dehalogenase-Like Family; HAD Family Hydrolase; Phosphatase; Hydrolase Protein; HAD Superfamily Protein; Haloacid Dehalogenase Superfamily Hydrolase; Haloacid Dehalogenase; Phosphoglycolate Phosphatase; Hydrolase Ripening-Related Protein-Like; Haloacid Dehalogenase-Like Hydrolase Family Protein; Hydrolase Of HAD Superfamily

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MPLLLPPPMRRPMPPPLDPIDSWIFDLDNTLYPPSAKLFDLIDERMGAFIMRLLGVDAIEARRVQKRYFHDHGTTMAGLM
RHHGVDPEEFLRDVHAIDLDRLTPDPRLRAGLERLPGRRLVFTNADADYAARVLEARGIADLFDGICDIRITRYTPKPEA
TAYDVMVAHLGVDPVRSLFVEDMARNLTPAKALGMTTVWLDNGSESGHRDHLPDHVDFHATDIADWLDNLPSPWGIA

Sequences:

>Translated_237_residues
MPLLLPPPMRRPMPPPLDPIDSWIFDLDNTLYPPSAKLFDLIDERMGAFIMRLLGVDAIEARRVQKRYFHDHGTTMAGLM
RHHGVDPEEFLRDVHAIDLDRLTPDPRLRAGLERLPGRRLVFTNADADYAARVLEARGIADLFDGICDIRITRYTPKPEA
TAYDVMVAHLGVDPVRSLFVEDMARNLTPAKALGMTTVWLDNGSESGHRDHLPDHVDFHATDIADWLDNLPSPWGIA
>Mature_236_residues
PLLLPPPMRRPMPPPLDPIDSWIFDLDNTLYPPSAKLFDLIDERMGAFIMRLLGVDAIEARRVQKRYFHDHGTTMAGLMR
HHGVDPEEFLRDVHAIDLDRLTPDPRLRAGLERLPGRRLVFTNADADYAARVLEARGIADLFDGICDIRITRYTPKPEAT
AYDVMVAHLGVDPVRSLFVEDMARNLTPAKALGMTTVWLDNGSESGHRDHLPDHVDFHATDIADWLDNLPSPWGIA

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6321214, Length=195, Percent_Identity=31.7948717948718, Blast_Score=82, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6320875, Length=219, Percent_Identity=28.310502283105, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26772; Mature: 26641

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLLLPPPMRRPMPPPLDPIDSWIFDLDNTLYPPSAKLFDLIDERMGAFIMRLLGVDAIE
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
ARRVQKRYFHDHGTTMAGLMRHHGVDPEEFLRDVHAIDLDRLTPDPRLRAGLERLPGRRL
HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEE
VFTNADADYAARVLEARGIADLFDGICDIRITRYTPKPEATAYDVMVAHLGVDPVRSLFV
EEECCCHHHHHHHHHHCCHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHCHHHHHHHHH
EDMARNLTPAKALGMTTVWLDNGSESGHRDHLPDHVDFHATDIADWLDNLPSPWGIA
HHHHHCCCHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PLLLPPPMRRPMPPPLDPIDSWIFDLDNTLYPPSAKLFDLIDERMGAFIMRLLGVDAIE
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
ARRVQKRYFHDHGTTMAGLMRHHGVDPEEFLRDVHAIDLDRLTPDPRLRAGLERLPGRRL
HHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEE
VFTNADADYAARVLEARGIADLFDGICDIRITRYTPKPEATAYDVMVAHLGVDPVRSLFV
EEECCCHHHHHHHHHHCCHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHCHHHHHHHHH
EDMARNLTPAKALGMTTVWLDNGSESGHRDHLPDHVDFHATDIADWLDNLPSPWGIA
HHHHHCCCHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA