| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488242
Identifier: 103488242
GI number: 103488242
Start: 2913937
End: 2914812
Strand: Direct
Name: 103488242
Synonym: Sala_2765
Alternate gene names: NA
Gene position: 2913937-2914812 (Clockwise)
Preceding gene: 103488241
Following gene: 103488243
Centisome position: 87.11
GC content: 68.72
Gene sequence:
>876_bases ATGCCTTGTCGGCCAGCCACCTGCCTCGCGGCCTTGCTTGTGTCCGCCGCGCAGGCGACCGGCGCAGGCGCCGCGCCCCC GCCGCCGGTCGAGCAGGCGTCCGCCAATCCGGACCCATCGAACGGAGTCGCCGCCGCCGACCCGCTGATCCTTGCCGATG ATGCCCTGCAGGGTCGCCGTCTTTTCGAAGCCCAGATGTATCTCGACCGGCTTGCCGCGGATCCACGTCCCGAAGCGCTG TTGCTGCGGGCCGAACTCGCGCTTTTGCGGGGTCGACCGCACGAAGCGCTCGCCCTGCTCGCGCGTCCCGGCGCCGATTC GACGCCGGTTTGCCGGACAGGCGCGGCCGCTGCGATGGCGCTGCTGCAGGTCGGGCGGGCCGAGCAGGCCTCCGCGCGAT CCGAAGCGCTCGACAGCCGCTGTTCGGCCGACCCGTTCCACTGGCGCACGCGAGGCCGGATTTCCTATGCGAGGCGCGAC ATTCCCGGAGCACTTGCCGCCTTTCGGCAGGCTCTGGCGCTCCAGCCATCGGATCCGGGCATCGAAAACGACCTAGCCGT ATCGCTTATCGCCGCAGGCGATGCCGAACAGGCCGCAGGAATGCTGACCGAATTGCTGCGCCAGGCGCCGGAGGCCAGCG ATGTCTCCCTGAATCTGGATTTCGCCAATGCGATGCGCGGAATCGAACCGGTGCGCAGGCCACAGGACGACGACCAGATG TGGAGCATCCGGCTGGAGATGGCGGGTCAAGGCGCGCGGCAGGCCCGTCGGATAAAACTGGCGGAATCGCTGCTGGCCAG GGCGCTGCTCAATCGGCCGCGTCACGACGACGCGTTGTGGCAGCAATATGCCGAGGTCGCCGGACGCGATGATTGA
Upstream 100 bases:
>100_bases CCTATCTCGACCGGCTGAACCGGCAGGCCGCGGCCGAGGAGTTCGCGGCGTTGTGGCGGGCGACTTTCTGGTCGTACCGC GGGGCCTGAGGCGCACGGAC
Downstream 100 bases:
>100_bases CATCATCGCCCTTTGCCAGCTGCTCTTCGTGCTGCTGCTGCTCGTCGCGGCGGCATCCGATCTGCGCTATCGGCGCATTC CGAACCTGATCCCGGCGCTC
Product: tetratricopeptide TPR_2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MPCRPATCLAALLVSAAQATGAGAAPPPPVEQASANPDPSNGVAAADPLILADDALQGRRLFEAQMYLDRLAADPRPEAL LLRAELALLRGRPHEALALLARPGADSTPVCRTGAAAAMALLQVGRAEQASARSEALDSRCSADPFHWRTRGRISYARRD IPGALAAFRQALALQPSDPGIENDLAVSLIAAGDAEQAAGMLTELLRQAPEASDVSLNLDFANAMRGIEPVRRPQDDDQM WSIRLEMAGQGARQARRIKLAESLLARALLNRPRHDDALWQQYAEVAGRDD
Sequences:
>Translated_291_residues MPCRPATCLAALLVSAAQATGAGAAPPPPVEQASANPDPSNGVAAADPLILADDALQGRRLFEAQMYLDRLAADPRPEAL LLRAELALLRGRPHEALALLARPGADSTPVCRTGAAAAMALLQVGRAEQASARSEALDSRCSADPFHWRTRGRISYARRD IPGALAAFRQALALQPSDPGIENDLAVSLIAAGDAEQAAGMLTELLRQAPEASDVSLNLDFANAMRGIEPVRRPQDDDQM WSIRLEMAGQGARQARRIKLAESLLARALLNRPRHDDALWQQYAEVAGRDD >Mature_290_residues PCRPATCLAALLVSAAQATGAGAAPPPPVEQASANPDPSNGVAAADPLILADDALQGRRLFEAQMYLDRLAADPRPEALL LRAELALLRGRPHEALALLARPGADSTPVCRTGAAAAMALLQVGRAEQASARSEALDSRCSADPFHWRTRGRISYARRDI PGALAAFRQALALQPSDPGIENDLAVSLIAAGDAEQAAGMLTELLRQAPEASDVSLNLDFANAMRGIEPVRRPQDDDQMW SIRLEMAGQGARQARRIKLAESLLARALLNRPRHDDALWQQYAEVAGRDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31023; Mature: 30892
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPCRPATCLAALLVSAAQATGAGAAPPPPVEQASANPDPSNGVAAADPLILADDALQGRR CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHH LFEAQMYLDRLAADPRPEALLLRAELALLRGRPHEALALLARPGADSTPVCRTGAAAAMA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCHHHHHHHHHH LLQVGRAEQASARSEALDSRCSADPFHWRTRGRISYARRDIPGALAAFRQALALQPSDPG HHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCC IENDLAVSLIAAGDAEQAAGMLTELLRQAPEASDVSLNLDFANAMRGIEPVRRPQDDDQM CCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCHHHCCCCCCCE WSIRLEMAGQGARQARRIKLAESLLARALLNRPRHDDALWQQYAEVAGRDD EEEEHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure PCRPATCLAALLVSAAQATGAGAAPPPPVEQASANPDPSNGVAAADPLILADDALQGRR CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHH LFEAQMYLDRLAADPRPEALLLRAELALLRGRPHEALALLARPGADSTPVCRTGAAAAMA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCHHHHHHHHHH LLQVGRAEQASARSEALDSRCSADPFHWRTRGRISYARRDIPGALAAFRQALALQPSDPG HHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCC IENDLAVSLIAAGDAEQAAGMLTELLRQAPEASDVSLNLDFANAMRGIEPVRRPQDDDQM CCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCHHHCCCCCCCE WSIRLEMAGQGARQARRIKLAESLLARALLNRPRHDDALWQQYAEVAGRDD EEEEHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA