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The map label for this gene is hofB [C]

Identifier: 103488238

GI number: 103488238

Start: 2909783

End: 2911033

Strand: Direct

Name: hofB [C]

Synonym: Sala_2761

Alternate gene names: 103488238

Gene position: 2909783-2911033 (Clockwise)

Preceding gene: 103488235

Following gene: 103488239

Centisome position: 86.98

GC content: 64.27

Gene sequence:

>1251_bases
GTGCAGGTGCATCGCGAACTGCTCGACGAAATCAATCTGACCCAACTGGAAAAACTGTCGCGGGCGCAGGTCGAAACCGA
AGCGGGCGACCTGATCGCGGACATTCTGAACCGCCATCAGCTGGCGCTCAACGCCAGCGAACGGCGGGCGATGGTGAGCG
ACGTTCTCGACGAACTGCTGGGGCTGGGACCGCTCGAACCGCTTTTGCAGGACGAGACGATCACCGACATACTGGTCAAC
GGGCACGATATCGTCTTCGTCGAGCGGCGCGGCCTGCTGCAGCGCGTCGACACGCGCTTCAAGGACGAGAGGCACCTTTT
CCGCATCATTCAGAAAATCGCGAGCGCGGTCGGACGACGCATCGACGAATCGTCGCCCTTCGTCGACGCCCGGCTTGCCG
ACGGGTCGCGCGTCAACGCGATCGTCCCGCCCCTGGCAATCGACGGTTCGCTGCTTTCGATCCGCAAATTCGCCCGCATT
CCGATCAATATGGCGCGACTCGTCGAACTGGGCAGCGTGCCCTCGGCGGTCGCCGAGGTGATGGAGGGGATAGTAAGAGC
GCGCCGGAACATACTCATCTCCGGCGGCACGGGGTCGGGCAAGACGACCTTGCTCAACGCCATTTCGGCCTTCATCGACG
AGCATGAGCGCATCGTGACGATCGAGGATTCGGCCGAACTGCAATTGCAGCAGGAACATGTCGCGCGGCTGGAGACGCGC
CCCGCCAATATCGAAGGCAGGGGAGAGGTCACGCAGCGCGATCTGGTCAAAAATGCCCTGCGCATGCGCCCCGACCGGAT
CATCGTCGGCGAAGTCCGCGCCGGCGAGGCCTTTGACATGCTCCAGGCGATGAACACCGGCCACGATGGGTCGATGACCA
CCGTCCACGCCAACACGGCACGCGATGCGCTGTCGCGCGTCGAACAGATGATCGGCATGAGCGGGATCGACATGCCGCCG
CGCGCGGCGCGCGGGCAGATCGCATCGGCGATCAACATCGTGATCCAGATCGGCCGACTTTCCGACGGCCGCCGCCGTCT
GCTCAGCCTGTCGGAAATCACCGGGATGGAAGGCGACGTCATCACCATGCAGGAGATTTTCCGGTTCCGCATGGCGGGGC
GCGACGCCGACAACCGCGTCGTCGGCCATTTCGAGGCGACGGGCATCCGGCCCAAGTTCCTGGAAACGCTGTCGGCGCAC
GGCGTCGAGCTGTCGCCCGATCTGTTCCGGCCCGACCGGCGGATCGATTGA

Upstream 100 bases:

>100_bases
TTGGCGTGATAATGGGTCGCCATGCCGACGCTCGCCTCGACCCGACACCATCCGCGCCGATGTCGATCACGACCGCAATG
CGGCGCTCCTGTCGCTGAAG

Downstream 100 bases:

>100_bases
GATGAACGACGCAGCCATCCGCTTTCTGATGATGCTGGCGCTTTTTGCGCTGGTCGTCCTGCTCGCGCAGGCGGTGATCG
GCTTCGTCGTCGAACGAAGC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MQVHRELLDEINLTQLEKLSRAQVETEAGDLIADILNRHQLALNASERRAMVSDVLDELLGLGPLEPLLQDETITDILVN
GHDIVFVERRGLLQRVDTRFKDERHLFRIIQKIASAVGRRIDESSPFVDARLADGSRVNAIVPPLAIDGSLLSIRKFARI
PINMARLVELGSVPSAVAEVMEGIVRARRNILISGGTGSGKTTLLNAISAFIDEHERIVTIEDSAELQLQQEHVARLETR
PANIEGRGEVTQRDLVKNALRMRPDRIIVGEVRAGEAFDMLQAMNTGHDGSMTTVHANTARDALSRVEQMIGMSGIDMPP
RAARGQIASAINIVIQIGRLSDGRRRLLSLSEITGMEGDVITMQEIFRFRMAGRDADNRVVGHFEATGIRPKFLETLSAH
GVELSPDLFRPDRRID

Sequences:

>Translated_416_residues
MQVHRELLDEINLTQLEKLSRAQVETEAGDLIADILNRHQLALNASERRAMVSDVLDELLGLGPLEPLLQDETITDILVN
GHDIVFVERRGLLQRVDTRFKDERHLFRIIQKIASAVGRRIDESSPFVDARLADGSRVNAIVPPLAIDGSLLSIRKFARI
PINMARLVELGSVPSAVAEVMEGIVRARRNILISGGTGSGKTTLLNAISAFIDEHERIVTIEDSAELQLQQEHVARLETR
PANIEGRGEVTQRDLVKNALRMRPDRIIVGEVRAGEAFDMLQAMNTGHDGSMTTVHANTARDALSRVEQMIGMSGIDMPP
RAARGQIASAINIVIQIGRLSDGRRRLLSLSEITGMEGDVITMQEIFRFRMAGRDADNRVVGHFEATGIRPKFLETLSAH
GVELSPDLFRPDRRID
>Mature_416_residues
MQVHRELLDEINLTQLEKLSRAQVETEAGDLIADILNRHQLALNASERRAMVSDVLDELLGLGPLEPLLQDETITDILVN
GHDIVFVERRGLLQRVDTRFKDERHLFRIIQKIASAVGRRIDESSPFVDARLADGSRVNAIVPPLAIDGSLLSIRKFARI
PINMARLVELGSVPSAVAEVMEGIVRARRNILISGGTGSGKTTLLNAISAFIDEHERIVTIEDSAELQLQQEHVARLETR
PANIEGRGEVTQRDLVKNALRMRPDRIIVGEVRAGEAFDMLQAMNTGHDGSMTTVHANTARDALSRVEQMIGMSGIDMPP
RAARGQIASAINIVIQIGRLSDGRRRLLSLSEITGMEGDVITMQEIFRFRMAGRDADNRVVGHFEATGIRPKFLETLSAH
GVELSPDLFRPDRRID

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=168, Percent_Identity=30.952380952381, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 46101; Mature: 46101

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVHRELLDEINLTQLEKLSRAQVETEAGDLIADILNRHQLALNASERRAMVSDVLDELL
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHH
GLGPLEPLLQDETITDILVNGHDIVFVERRGLLQRVDTRFKDERHLFRIIQKIASAVGRR
CCCCCCHHHCCCHHHHHEECCCCEEEEECHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
IDESSPFVDARLADGSRVNAIVPPLAIDGSLLSIRKFARIPINMARLVELGSVPSAVAEV
CCCCCCCEEEEECCCCCCCEECCCCEECCCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHH
MEGIVRARRNILISGGTGSGKTTLLNAISAFIDEHERIVTIEDSAELQLQQEHVARLETR
HHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCC
PANIEGRGEVTQRDLVKNALRMRPDRIIVGEVRAGEAFDMLQAMNTGHDGSMTTVHANTA
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECHHH
RDALSRVEQMIGMSGIDMPPRAARGQIASAINIVIQIGRLSDGRRRLLSLSEITGMEGDV
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCCE
ITMQEIFRFRMAGRDADNRVVGHFEATGIRPKFLETLSAHGVELSPDLFRPDRRID
EEHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHCCCCCCCC
>Mature Secondary Structure
MQVHRELLDEINLTQLEKLSRAQVETEAGDLIADILNRHQLALNASERRAMVSDVLDELL
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHH
GLGPLEPLLQDETITDILVNGHDIVFVERRGLLQRVDTRFKDERHLFRIIQKIASAVGRR
CCCCCCHHHCCCHHHHHEECCCCEEEEECHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
IDESSPFVDARLADGSRVNAIVPPLAIDGSLLSIRKFARIPINMARLVELGSVPSAVAEV
CCCCCCCEEEEECCCCCCCEECCCCEECCCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHH
MEGIVRARRNILISGGTGSGKTTLLNAISAFIDEHERIVTIEDSAELQLQQEHVARLETR
HHHHHHHHHCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCC
PANIEGRGEVTQRDLVKNALRMRPDRIIVGEVRAGEAFDMLQAMNTGHDGSMTTVHANTA
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECHHH
RDALSRVEQMIGMSGIDMPPRAARGQIASAINIVIQIGRLSDGRRRLLSLSEITGMEGDV
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCCE
ITMQEIFRFRMAGRDADNRVVGHFEATGIRPKFLETLSAHGVELSPDLFRPDRRID
EEHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]