| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103488223
Identifier: 103488223
GI number: 103488223
Start: 2897026
End: 2897469
Strand: Direct
Name: 103488223
Synonym: Sala_2746
Alternate gene names: NA
Gene position: 2897026-2897469 (Clockwise)
Preceding gene: 103488221
Following gene: 103488225
Centisome position: 86.6
GC content: 59.68
Gene sequence:
>444_bases ATGCCGAGAACTTGGAAAACGGCCATATTGGCCGGCCTGTCGTCGTGCGCACTTGCCACGGCGGCATCGGCCCAGAATTA CCCGTTCACCGCGGGCGACTATACCGAGGTGTCGATGATCGACGTCGCCGACGGCGGCGGGATGCAATATGCGACCTTCC TCGCCGATCAATGGCGCAAATCGCAGGAATTCGCCAAGGCACAGGGATGGATCACCGGCTACGCCGTTTTCAGCAACTAT AATTCGCGCCCCGGCGAACCCGACCTTTATCTGTCGGTGACCTTTGCAAGCCTGCCCGATGGCGCGGAAGACGAGCGGCG CAATCAGGCCTATCGCGATTTCATGAAGCGCACCGACGCCCAGATGTCGGCCGAATCGGGCGATCGCACGAAATATCGCA CCGTCATGGGCAGTTTCCTGCTGCGCGAACTCAAGTTCAAATAG
Upstream 100 bases:
>100_bases ATGCCGAGTCGTCCCGCGACGGACGCTGGCGCGATATCGACACCGGGGACCGGGCGAAGAGAGCCGATGTGGCTCCCTGC CGGGGTTGGAGGACCAGACA
Downstream 100 bases:
>100_bases CCATCGGCGGCGCCGGGCCGTTCGGGCCCGGCGCCCCCATCGGGCGTCACAATCCCAATACCTGCGGCATGGTGTAACGT CCGGGTTTCTGATGGATCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MPRTWKTAILAGLSSCALATAASAQNYPFTAGDYTEVSMIDVADGGGMQYATFLADQWRKSQEFAKAQGWITGYAVFSNY NSRPGEPDLYLSVTFASLPDGAEDERRNQAYRDFMKRTDAQMSAESGDRTKYRTVMGSFLLRELKFK
Sequences:
>Translated_147_residues MPRTWKTAILAGLSSCALATAASAQNYPFTAGDYTEVSMIDVADGGGMQYATFLADQWRKSQEFAKAQGWITGYAVFSNY NSRPGEPDLYLSVTFASLPDGAEDERRNQAYRDFMKRTDAQMSAESGDRTKYRTVMGSFLLRELKFK >Mature_146_residues PRTWKTAILAGLSSCALATAASAQNYPFTAGDYTEVSMIDVADGGGMQYATFLADQWRKSQEFAKAQGWITGYAVFSNYN SRPGEPDLYLSVTFASLPDGAEDERRNQAYRDFMKRTDAQMSAESGDRTKYRTVMGSFLLRELKFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16404; Mature: 16273
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRTWKTAILAGLSSCALATAASAQNYPFTAGDYTEVSMIDVADGGGMQYATFLADQWRK CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH SQEFAKAQGWITGYAVFSNYNSRPGEPDLYLSVTFASLPDGAEDERRNQAYRDFMKRTDA HHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH QMSAESGDRTKYRTVMGSFLLRELKFK HHCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PRTWKTAILAGLSSCALATAASAQNYPFTAGDYTEVSMIDVADGGGMQYATFLADQWRK CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH SQEFAKAQGWITGYAVFSNYNSRPGEPDLYLSVTFASLPDGAEDERRNQAYRDFMKRTDA HHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH QMSAESGDRTKYRTVMGSFLLRELKFK HHCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA