| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488211
Identifier: 103488211
GI number: 103488211
Start: 2880468
End: 2881040
Strand: Direct
Name: 103488211
Synonym: Sala_2734
Alternate gene names: NA
Gene position: 2880468-2881040 (Clockwise)
Preceding gene: 103488210
Following gene: 103488216
Centisome position: 86.11
GC content: 60.21
Gene sequence:
>573_bases ATGGACAAGTTTTTCGGTAATCTGCATGCCGTCCTGGGCGCCGGACTGGTGCTCGCGATCATATTGATGCTCGGCCTCAA CGGCCAGAATTTCGAGGACGGGGTTGCGGCGGGCAATGCGATCATGCGCTGGCTGCACACCTTTTTCGGCGTGCTGTGGA TCGGGCTGCTCTATTATTTCAACTTCGTCCAGATACCGACGATGCCCAAGATTCCGGCCGAGCTGAAACCCGCAGTCGGC AAGCATATCGCGCCCGCCGCGCTGTTCTGGTTCCGCTGGGCGGCGCTTCTTACCGTATTGTTCGGCCTCGCGATCGCCGG CCACGCCCAATATCTGGCGCCCGCGCTGGCGCTGCAGGAGCCGTACAAGCTGATCGGCGTCGGCATGTGGCTGGGCCTGA TCATGGCGTTCAACGTCTGGTTTCTGATCTGGCCCAACCAGAAAAAGGCACTGGGCATCGTCGAGGCCGACGACGCGACG AAAGCGAAGGCGGCGAAGACCGCGATGATCTTTTCGCGGACCAACACGCTGCTGTCGATCCCGATGCTCTACGCTATGGT GAATTTCAGCTGA
Upstream 100 bases:
>100_bases GGGTGCTACCGACAAAAGTTGATGCCGCCCCGCATCGCTGGCATAGCTGCGGCACGGCACCGGGTCGCACGCGGCGCCGC GATAATTTGGGGGAACTGCC
Downstream 100 bases:
>100_bases GCTTTGTTCCCCTCCCGCTGTGCGGGAGGGGAGATTCTTACCCCTCCACCGCCGCCTTGTGCATCCGGCCGTTCATCACA TAGTGGGCGACGCCCATCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 190
Protein sequence:
>190_residues MDKFFGNLHAVLGAGLVLAIILMLGLNGQNFEDGVAAGNAIMRWLHTFFGVLWIGLLYYFNFVQIPTMPKIPAELKPAVG KHIAPAALFWFRWAALLTVLFGLAIAGHAQYLAPALALQEPYKLIGVGMWLGLIMAFNVWFLIWPNQKKALGIVEADDAT KAKAAKTAMIFSRTNTLLSIPMLYAMVNFS
Sequences:
>Translated_190_residues MDKFFGNLHAVLGAGLVLAIILMLGLNGQNFEDGVAAGNAIMRWLHTFFGVLWIGLLYYFNFVQIPTMPKIPAELKPAVG KHIAPAALFWFRWAALLTVLFGLAIAGHAQYLAPALALQEPYKLIGVGMWLGLIMAFNVWFLIWPNQKKALGIVEADDAT KAKAAKTAMIFSRTNTLLSIPMLYAMVNFS >Mature_190_residues MDKFFGNLHAVLGAGLVLAIILMLGLNGQNFEDGVAAGNAIMRWLHTFFGVLWIGLLYYFNFVQIPTMPKIPAELKPAVG KHIAPAALFWFRWAALLTVLFGLAIAGHAQYLAPALALQEPYKLIGVGMWLGLIMAFNVWFLIWPNQKKALGIVEADDAT KAKAAKTAMIFSRTNTLLSIPMLYAMVNFS
Specific function: Unknown
COG id: COG3748
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20911; Mature: 20911
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKFFGNLHAVLGAGLVLAIILMLGLNGQNFEDGVAAGNAIMRWLHTFFGVLWIGLLYYF CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NFVQIPTMPKIPAELKPAVGKHIAPAALFWFRWAALLTVLFGLAIAGHAQYLAPALALQE HHHCCCCCCCCCHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PYKLIGVGMWLGLIMAFNVWFLIWPNQKKALGIVEADDATKAKAAKTAMIFSRTNTLLSI CHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHH PMLYAMVNFS HHHHHHHCCC >Mature Secondary Structure MDKFFGNLHAVLGAGLVLAIILMLGLNGQNFEDGVAAGNAIMRWLHTFFGVLWIGLLYYF CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NFVQIPTMPKIPAELKPAVGKHIAPAALFWFRWAALLTVLFGLAIAGHAQYLAPALALQE HHHCCCCCCCCCHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PYKLIGVGMWLGLIMAFNVWFLIWPNQKKALGIVEADDATKAKAAKTAMIFSRTNTLLSI CHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHH PMLYAMVNFS HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA