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The map label for this gene is yciR [C]

Identifier: 103488206

GI number: 103488206

Start: 2874989

End: 2876620

Strand: Direct

Name: yciR [C]

Synonym: Sala_2729

Alternate gene names: 103488206

Gene position: 2874989-2876620 (Clockwise)

Preceding gene: 103488201

Following gene: 103488207

Centisome position: 85.94

GC content: 65.93

Gene sequence:

>1632_bases
ATGTATTCGACGCCAAAGTCACTGGACCGCAGCGAGGGCGCCAGACGCGACATCATCACCGGAGGCATCGTCGTTGCCGC
GACCTTGCTGTTCATCGGCACGGGCGGCAATGTCATGCAGGCGGTCGTTCGCGCGCTGATCGGGATCGGCGGCGGACCCG
ACCGGGTGCTGGCGACCGCGCTGGTGCTCAACATCGCGCTGATCCTCTTCGGCTGGCGCCGCTACAATGATCTCAACCGC
GAAATCCGCGAGCGCACCGAGGCCGAGCAGCGCGCACGATATCTTGCCGACACCGACCCGCTCACCGGCTTTCTCAACCG
CCGCGCGCTGCTGGTGAAGGGCCAGCGGATGATTGCCGAAGCCGTGGCCGAAAAGCGCGAGGTCGCGCTGTTCCTGCTCG
ACCTCGACCATTTCAAGACGGTGAACGACATCCACGGTCATGCCGCGGGCGACCGCGTGCTGCAGGTCGCGGCCGAACGC
ATCGCCGCCGTGCTTCCGCCGAACGCCACCAAGGCGCGGCTCGGCGGCGACGAGTTCGTCGCGATGATGGCATTCGACCC
TTCGGCGCGCGGCGACATCGACGCGCTGGCGGCAGAACTGGTCACCGCGCTGGACAACCGGATCATGCACGACGCGCAGC
AGATCCGCATCGGCGCCTCGCTCGGCATCGCGCTGGCAAGCGACGGCGGCGTCTCGATGGACACGATGGTTCGTCAGGCC
GACATCGCCATGTATCATGGCAAGGACGAAGGGCGGAACCGCCATGTCTGGTTCGAACAGGGCATGGAAATGGCGGTGCA
GGTGCGCAACCAGATCGAAACGGGCATTCGCGAAGGCATGCCGCGCGGCGAGTTCGTGCCACACTTCGAGCCGCAGGTTG
ACATCGCGTCGGGCCGCCTCGTCGGATTTGAAATGCTGATGCGCTGGGAATCGCCCGAACATGGCCTGATTCCGCCCGAA
CGCTTCATTCCGGTTGCCGAGGCAAGCGGGCTGATCGGGGAATTGTCGCTGCGCGTGATCCGCGACGCGATGGACATCGC
AAAACGCTGGGATCCGTCGATCATCCTCGCCGTCAATATCTCACCGCAGCAGTTGAAAGACCCCTGGTTCAGCCAGAAGC
TCACCAAGCTGCTCGTCGAAACGGGTTTCCCCGCGGCGCAGCTCGAGGTCGAGATCACCGAAAGCTCGCTGTTCGAAAAT
CTGCCGCTCGTCCGCTCGATCGTCACCAGCCTCAAGAATCAGGGGGTGTCGCTGAGCCTCGACGATTTCGGGACTGGCTA
CAGTTCGCTGTCGCATCTCCGCGCGCTGCCCTTCGACCGGATCAAGATCGACCGCAGTTTCGTCACCGCAATGCGCGGCA
GCCCCGACGCGCAGGCGATCGTCCTCGCGATCGTCCGGCTGGGCGAAAGCCTGGCGATGCCGATCACCGCCGAGGGCGTC
GAGGATGAGGCGACCGCGATCGAATTGACGCGGCTCGGCTGCGCGAAAGGGCAGGGCTGGCATTTCGGCCGCGCCGCATC
GGCCGCCGACACCGAGCGCCTGCTCGCCGACCGCGGGCTGCTGCGCGATCCAGTGGGGGCGGCGCCGACGCAGGGCGCCG
ACGCGGAAGGGTTGCTGCGCAAGACCGCTTGA

Upstream 100 bases:

>100_bases
CAAGAACCGCGCCAAGGCAAGGCAAAGGGACGGAGCCGCACTTAACCCAAATTTCACCGCTTCGCCCGCATAAGGCGGGT
CGAGGGTGGGCCAAGTTCAT

Downstream 100 bases:

>100_bases
TTCCGGCGCCTCGCCTAGACTTCGCGCGTCCGCGCCCTTACATGCGCGGACTATGGCAGATCGCTTCACCAAGATGCATG
GGCTTGGCAACGACTTCGTC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MYSTPKSLDRSEGARRDIITGGIVVAATLLFIGTGGNVMQAVVRALIGIGGGPDRVLATALVLNIALILFGWRRYNDLNR
EIRERTEAEQRARYLADTDPLTGFLNRRALLVKGQRMIAEAVAEKREVALFLLDLDHFKTVNDIHGHAAGDRVLQVAAER
IAAVLPPNATKARLGGDEFVAMMAFDPSARGDIDALAAELVTALDNRIMHDAQQIRIGASLGIALASDGGVSMDTMVRQA
DIAMYHGKDEGRNRHVWFEQGMEMAVQVRNQIETGIREGMPRGEFVPHFEPQVDIASGRLVGFEMLMRWESPEHGLIPPE
RFIPVAEASGLIGELSLRVIRDAMDIAKRWDPSIILAVNISPQQLKDPWFSQKLTKLLVETGFPAAQLEVEITESSLFEN
LPLVRSIVTSLKNQGVSLSLDDFGTGYSSLSHLRALPFDRIKIDRSFVTAMRGSPDAQAIVLAIVRLGESLAMPITAEGV
EDEATAIELTRLGCAKGQGWHFGRAASAADTERLLADRGLLRDPVGAAPTQGADAEGLLRKTA

Sequences:

>Translated_543_residues
MYSTPKSLDRSEGARRDIITGGIVVAATLLFIGTGGNVMQAVVRALIGIGGGPDRVLATALVLNIALILFGWRRYNDLNR
EIRERTEAEQRARYLADTDPLTGFLNRRALLVKGQRMIAEAVAEKREVALFLLDLDHFKTVNDIHGHAAGDRVLQVAAER
IAAVLPPNATKARLGGDEFVAMMAFDPSARGDIDALAAELVTALDNRIMHDAQQIRIGASLGIALASDGGVSMDTMVRQA
DIAMYHGKDEGRNRHVWFEQGMEMAVQVRNQIETGIREGMPRGEFVPHFEPQVDIASGRLVGFEMLMRWESPEHGLIPPE
RFIPVAEASGLIGELSLRVIRDAMDIAKRWDPSIILAVNISPQQLKDPWFSQKLTKLLVETGFPAAQLEVEITESSLFEN
LPLVRSIVTSLKNQGVSLSLDDFGTGYSSLSHLRALPFDRIKIDRSFVTAMRGSPDAQAIVLAIVRLGESLAMPITAEGV
EDEATAIELTRLGCAKGQGWHFGRAASAADTERLLADRGLLRDPVGAAPTQGADAEGLLRKTA
>Mature_543_residues
MYSTPKSLDRSEGARRDIITGGIVVAATLLFIGTGGNVMQAVVRALIGIGGGPDRVLATALVLNIALILFGWRRYNDLNR
EIRERTEAEQRARYLADTDPLTGFLNRRALLVKGQRMIAEAVAEKREVALFLLDLDHFKTVNDIHGHAAGDRVLQVAAER
IAAVLPPNATKARLGGDEFVAMMAFDPSARGDIDALAAELVTALDNRIMHDAQQIRIGASLGIALASDGGVSMDTMVRQA
DIAMYHGKDEGRNRHVWFEQGMEMAVQVRNQIETGIREGMPRGEFVPHFEPQVDIASGRLVGFEMLMRWESPEHGLIPPE
RFIPVAEASGLIGELSLRVIRDAMDIAKRWDPSIILAVNISPQQLKDPWFSQKLTKLLVETGFPAAQLEVEITESSLFEN
LPLVRSIVTSLKNQGVSLSLDDFGTGYSSLSHLRALPFDRIKIDRSFVTAMRGSPDAQAIVLAIVRLGESLAMPITAEGV
EDEATAIELTRLGCAKGQGWHFGRAASAADTERLLADRGLLRDPVGAAPTQGADAEGLLRKTA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=438, Percent_Identity=36.986301369863, Blast_Score=258, Evalue=9e-70,
Organism=Escherichia coli, GI87081921, Length=431, Percent_Identity=31.0904872389791, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI226510982, Length=438, Percent_Identity=28.7671232876712, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=36.8200836820084, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI1786507, Length=223, Percent_Identity=35.4260089686099, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=32.8063241106719, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=29.8755186721992, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788502, Length=260, Percent_Identity=32.3076923076923, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=28.5106382978723, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI87081980, Length=259, Percent_Identity=30.1158301158301, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1788849, Length=216, Percent_Identity=31.0185185185185, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=193, Percent_Identity=27.4611398963731, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=36.2162162162162, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=29.4797687861272, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=30.1675977653631, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=33.7349397590361, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87082096, Length=449, Percent_Identity=22.271714922049, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=33.9869281045752, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=33.9285714285714, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=152, Percent_Identity=32.8947368421053, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787802, Length=189, Percent_Identity=28.042328042328, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=28.7425149700599, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=198, Percent_Identity=26.2626262626263, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787410, Length=219, Percent_Identity=26.027397260274, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 59100; Mature: 59100

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSTPKSLDRSEGARRDIITGGIVVAATLLFIGTGGNVMQAVVRALIGIGGGPDRVLATA
CCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHH
LVLNIALILFGWRRYNDLNREIRERTEAEQRARYLADTDPLTGFLNRRALLVKGQRMIAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHHHHH
AVAEKREVALFLLDLDHFKTVNDIHGHAAGDRVLQVAAERIAAVLPPNATKARLGGDEFV
HHHHHHCEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
AMMAFDPSARGDIDALAAELVTALDNRIMHDAQQIRIGASLGIALASDGGVSMDTMVRQA
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCHHHHHHHH
DIAMYHGKDEGRNRHVWFEQGMEMAVQVRNQIETGIREGMPRGEFVPHFEPQVDIASGRL
HHEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCH
VGFEMLMRWESPEHGLIPPERFIPVAEASGLIGELSLRVIRDAMDIAKRWDPSIILAVNI
HHHHHHHHCCCCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
SPQQLKDPWFSQKLTKLLVETGFPAAQLEVEITESSLFENLPLVRSIVTSLKNQGVSLSL
CHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHCCHHHHHHHHHHHCCCCEEEH
DDFGTGYSSLSHLRALPFDRIKIDRSFVTAMRGSPDAQAIVLAIVRLGESLAMPITAEGV
HCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHCCCEECCCC
EDEATAIELTRLGCAKGQGWHFGRAASAADTERLLADRGLLRDPVGAAPTQGADAEGLLR
CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
KTA
CCC
>Mature Secondary Structure
MYSTPKSLDRSEGARRDIITGGIVVAATLLFIGTGGNVMQAVVRALIGIGGGPDRVLATA
CCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHH
LVLNIALILFGWRRYNDLNREIRERTEAEQRARYLADTDPLTGFLNRRALLVKGQRMIAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHHHHH
AVAEKREVALFLLDLDHFKTVNDIHGHAAGDRVLQVAAERIAAVLPPNATKARLGGDEFV
HHHHHHCEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
AMMAFDPSARGDIDALAAELVTALDNRIMHDAQQIRIGASLGIALASDGGVSMDTMVRQA
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCHHHHHHHH
DIAMYHGKDEGRNRHVWFEQGMEMAVQVRNQIETGIREGMPRGEFVPHFEPQVDIASGRL
HHEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCH
VGFEMLMRWESPEHGLIPPERFIPVAEASGLIGELSLRVIRDAMDIAKRWDPSIILAVNI
HHHHHHHHCCCCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
SPQQLKDPWFSQKLTKLLVETGFPAAQLEVEITESSLFENLPLVRSIVTSLKNQGVSLSL
CHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHCCHHHHHHHHHHHCCCCEEEH
DDFGTGYSSLSHLRALPFDRIKIDRSFVTAMRGSPDAQAIVLAIVRLGESLAMPITAEGV
HCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHCCCEECCCC
EDEATAIELTRLGCAKGQGWHFGRAASAADTERLLADRGLLRDPVGAAPTQGADAEGLLR
CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
KTA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]