| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is fecR [C]
Identifier: 103488077
GI number: 103488077
Start: 2737923
End: 2739020
Strand: Direct
Name: fecR [C]
Synonym: Sala_2599
Alternate gene names: 103488077
Gene position: 2737923-2739020 (Clockwise)
Preceding gene: 103488076
Following gene: 103488078
Centisome position: 81.85
GC content: 65.66
Gene sequence:
>1098_bases ATGAGCGGCGAAGAATGGCCGGCCGGCAAAGCCTCGTCATCAAGCGATCTCGAAGCGGCAGCCTGGTGTTTTCGCTTGAA GGAAACGCCAACAGAGGCGCTGTTCGCCGAATTCCGGTCTTGGATCGATGCGTCCAAGACCAACGCCGAGGCGTTCGCCA ATGCGATGCTGGTGGCACCGATGAAGCCCGCCGAGCGCGACCGCATCGAACAGTTTCTGGGACAACCCCTCCCTGCCCTC GATCGATCCGGCAGCAAGGCGCGAACGGGTTCGCCAGCAGCAACGATTCACACCTTTCCGGCCAAGAACGATGCAACTCC GCTCAAACCCGCAGGCCCCAGCCGCAAGGGACGCAGATGGGCGGCCGGCGCGATAGCGGCGGCGGCAATGGTTGCGCTGA CCGTCGGGCTCCTCCCGAACTTGCCGCTCCCGTGGCTCATGTCGCAGGCCCGAGCCGAGACCTATGCGACGGGTCATGGA GATATCCGGCGTTTCACGCTGGAGGACGGATCGCTCGTGACGCTCGACACCGACAGCCGGGTCGAGGTGGCAATCGACCG GAGCAAACGCCACGCCCTGCTGCGCCAGGGCCGCGCGCGCTTCGTCGTGGCGGCCGATCCGCGCCCCTTCACGATCCAGG CCGGGAATGGCGATGTCGTCGCGGCCGAAGGGGCGATTGATGTCGAGGTGGCCGGGAATGCCCACGTCGAACTGCGCCTG CGGTCGGGCTCGGCCAGCGTGAAGGCACGCGATACAAACGATAAACAGAGCGAGAGCATGCCGCTCACGATCGACCATCC CGTCCTCTACGCGGGAGGCGATTTCGCGCCGCGGGTGGTTACGGCGCCGACGGCTGATACGCGCGACTGGCCGAGCGGAT GGGTGGAATATCGCACGATCCCGCTCGGCGAGCTTATCCGCGAGGCAAATCGCTATGCGAAAACGCCGATCATCCTCGAC GATCCGAAGCTTGCGGGCCTCGCCGCGTCAGGGCGGTTCCAACTCACCGAGACGGACAGGTTCGCAAGCCGGATCGCCGA GTTGTTCCAGCTCCGCATCTCCCGCCGGGCCGACGGCATCCATCTCCGGCCCCAATAG
Upstream 100 bases:
>100_bases ATAGTCAGATCAGTGAACAACTCGGGATCAGCATGGCGACAGTGCAATATCATATGGTGCGCGCGATCGCCTTCGTCGCC GCGGCGGTGAAGGATCATCG
Downstream 100 bases:
>100_bases CAGCGCCCGTGAAATAATTTGCGAAGGGTGACTGACGGCACCCCTGCAACCTTCGTCGATACCCCCATCAAGAGCGAGCC GACCGGCATACGCTCATGAT
Product: putative FecR
Products: NA
Alternate protein names: Sigma Factor Regulatory Protein FecR/PupR Family; Transmembrane Sensor; FecR Family Protein; Anti-Feci Sigma Factor Fecr; Transcriptional Regulator; FecR Protein; Fe2+-Dicitrate Sensor Membrane Protein; Fec Operon Regulator FecR; FecR Iron Siderophore Sensor Protein; FecR Iron Transport Regulator Family Protein; Inner Membrane Sensor For Iron Transport; Regulatory Protein; Transmembrane Sensor Protein; Fe2+-Dicitrate Sensor Membrane Component; FecR Family; Sigma Factor Regulatory Protein FecR; Anti-Sigma Factor Protein FecR Family; IRON Transport-Sensory Transduction Transmembrane Protein; Iron-Dicitrate Sensor Membrane Component; FecR-Like Transmembrane Sensor; Iron Uptake Transcriptional Regulator Protein; Iron Dicitrate Transmembrane Sensor FecR; Two-Component System Sensor Protein
Number of amino acids: Translated: 365; Mature: 364
Protein sequence:
>365_residues MSGEEWPAGKASSSSDLEAAAWCFRLKETPTEALFAEFRSWIDASKTNAEAFANAMLVAPMKPAERDRIEQFLGQPLPAL DRSGSKARTGSPAATIHTFPAKNDATPLKPAGPSRKGRRWAAGAIAAAAMVALTVGLLPNLPLPWLMSQARAETYATGHG DIRRFTLEDGSLVTLDTDSRVEVAIDRSKRHALLRQGRARFVVAADPRPFTIQAGNGDVVAAEGAIDVEVAGNAHVELRL RSGSASVKARDTNDKQSESMPLTIDHPVLYAGGDFAPRVVTAPTADTRDWPSGWVEYRTIPLGELIREANRYAKTPIILD DPKLAGLAASGRFQLTETDRFASRIAELFQLRISRRADGIHLRPQ
Sequences:
>Translated_365_residues MSGEEWPAGKASSSSDLEAAAWCFRLKETPTEALFAEFRSWIDASKTNAEAFANAMLVAPMKPAERDRIEQFLGQPLPAL DRSGSKARTGSPAATIHTFPAKNDATPLKPAGPSRKGRRWAAGAIAAAAMVALTVGLLPNLPLPWLMSQARAETYATGHG DIRRFTLEDGSLVTLDTDSRVEVAIDRSKRHALLRQGRARFVVAADPRPFTIQAGNGDVVAAEGAIDVEVAGNAHVELRL RSGSASVKARDTNDKQSESMPLTIDHPVLYAGGDFAPRVVTAPTADTRDWPSGWVEYRTIPLGELIREANRYAKTPIILD DPKLAGLAASGRFQLTETDRFASRIAELFQLRISRRADGIHLRPQ >Mature_364_residues SGEEWPAGKASSSSDLEAAAWCFRLKETPTEALFAEFRSWIDASKTNAEAFANAMLVAPMKPAERDRIEQFLGQPLPALD RSGSKARTGSPAATIHTFPAKNDATPLKPAGPSRKGRRWAAGAIAAAAMVALTVGLLPNLPLPWLMSQARAETYATGHGD IRRFTLEDGSLVTLDTDSRVEVAIDRSKRHALLRQGRARFVVAADPRPFTIQAGNGDVVAAEGAIDVEVAGNAHVELRLR SGSASVKARDTNDKQSESMPLTIDHPVLYAGGDFAPRVVTAPTADTRDWPSGWVEYRTIPLGELIREANRYAKTPIILDD PKLAGLAASGRFQLTETDRFASRIAELFQLRISRRADGIHLRPQ
Specific function: Regulation Of Iron Dicitrate Transport. In The Absence Of Citrate Fecr Inactivates Feci. Fecr Is Probably A Sensor That Recognizes Iron Dicitrate In The Periplasm. [C]
COG id: COG3712
COG function: function code PT; Fe2+-dicitrate sensor, membrane component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39539; Mature: 39408
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGEEWPAGKASSSSDLEAAAWCFRLKETPTEALFAEFRSWIDASKTNAEAFANAMLVAP CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHCEEEEEC MKPAERDRIEQFLGQPLPALDRSGSKARTGSPAATIHTFPAKNDATPLKPAGPSRKGRRW CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCH AAGAIAAAAMVALTVGLLPNLPLPWLMSQARAETYATGHGDIRRFTLEDGSLVTLDTDSR HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCEEEEEECCCCEEEECCCCE VEVAIDRSKRHALLRQGRARFVVAADPRPFTIQAGNGDVVAAEGAIDVEVAGNAHVELRL EEEEECCHHHHHHHHCCCEEEEEEECCCCEEEECCCCCEEEECCEEEEEECCCCEEEEEE RSGSASVKARDTNDKQSESMPLTIDHPVLYAGGDFAPRVVTAPTADTRDWPSGWVEYRTI ECCCCEEEEECCCCCCCCCCCEEECCCEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEC PLGELIREANRYAKTPIILDDPKLAGLAASGRFQLTETDRFASRIAELFQLRISRRADGI CHHHHHHHHHHHHCCCEEECCCCCCCEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCE HLRPQ ECCCC >Mature Secondary Structure SGEEWPAGKASSSSDLEAAAWCFRLKETPTEALFAEFRSWIDASKTNAEAFANAMLVAP CCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHCEEEEEC MKPAERDRIEQFLGQPLPALDRSGSKARTGSPAATIHTFPAKNDATPLKPAGPSRKGRRW CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCH AAGAIAAAAMVALTVGLLPNLPLPWLMSQARAETYATGHGDIRRFTLEDGSLVTLDTDSR HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCEEEEEECCCCEEEECCCCE VEVAIDRSKRHALLRQGRARFVVAADPRPFTIQAGNGDVVAAEGAIDVEVAGNAHVELRL EEEEECCHHHHHHHHCCCEEEEEEECCCCEEEECCCCCEEEECCEEEEEECCCCEEEEEE RSGSASVKARDTNDKQSESMPLTIDHPVLYAGGDFAPRVVTAPTADTRDWPSGWVEYRTI ECCCCEEEEECCCCCCCCCCCEEECCCEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEC PLGELIREANRYAKTPIILDDPKLAGLAASGRFQLTETDRFASRIAELFQLRISRRADGI CHHHHHHHHHHHHCCCEEECCCCCCCEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCE HLRPQ ECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA