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The map label for this gene is fecI [C]

Identifier: 103488076

GI number: 103488076

Start: 2737321

End: 2737926

Strand: Direct

Name: fecI [C]

Synonym: Sala_2598

Alternate gene names: 103488076

Gene position: 2737321-2737926 (Clockwise)

Preceding gene: 103488075

Following gene: 103488077

Centisome position: 81.83

GC content: 62.21

Gene sequence:

>606_bases
GTGTCATCGTCCGCTCCGCCGTTTCGCCACCATCGGCCTCCCTTTTCGGTTTCGTCGGGAGCGCATAACTGCCCTGTCGA
CGTCTTCGAGCCTGCCTGTGGAGAGGCCTCCGCGACCAACCTGGACGAGACGTTTCGTACCGAACGCAGGGCGCTCTTGC
GCTATCTGGGGCGCCGTGCGGGTCATGATGCCGCGCCCGATCTGGTGCAGGAAGTGTTCGCCCGAGCAGCCGGCAGCGCG
CAGGCGTCGCGTCTCGCCAATCCGGCGGCGTTCGTCAGGCGCATCGCCAGGAACCTGCTGATCGACCGCGCGCGTCGCCG
CGAGAGCGACAATAATATCGTGATCTTTCCTCTCGACGAGCAGCGCGACCTAAGCGTGCCGCCGGAACAAACTCTGAATC
TCGAAGCGGCCGACCTGTTGCGCATCTACGAACAGGCGGTCAATGATCTGCCCGAGAAGACCCGCCGGGTCTTTATGATG
AGCCGGGACGAAGAACTCACCTATAGTCAGATCAGTGAACAACTCGGGATCAGCATGGCGACAGTGCAATATCATATGGT
GCGCGCGATCGCCTTCGTCGCCGCGGCGGTGAAGGATCATCGATGA

Upstream 100 bases:

>100_bases
ACAAGGGCATCCGTCAGGATCGCCTGACGGCGGCACAGCGATGGAAGTATCATGGCCGGCTTCCCGGCCATCATGCGCTG
CTGCCCCCGGGAAGTTCCAC

Downstream 100 bases:

>100_bases
GCGGCGAAGAATGGCCGGCCGGCAAAGCCTCGTCATCAAGCGATCTCGAAGCGGCAGCCTGGTGTTTTCGCTTGAAGGAA
ACGCCAACAGAGGCGCTGTT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF Family Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; Iron-Related RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor FecI; RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; Fec I Like Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Sigma Factor FecI Family

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MSSSAPPFRHHRPPFSVSSGAHNCPVDVFEPACGEASATNLDETFRTERRALLRYLGRRAGHDAAPDLVQEVFARAAGSA
QASRLANPAAFVRRIARNLLIDRARRRESDNNIVIFPLDEQRDLSVPPEQTLNLEAADLLRIYEQAVNDLPEKTRRVFMM
SRDEELTYSQISEQLGISMATVQYHMVRAIAFVAAAVKDHR

Sequences:

>Translated_201_residues
MSSSAPPFRHHRPPFSVSSGAHNCPVDVFEPACGEASATNLDETFRTERRALLRYLGRRAGHDAAPDLVQEVFARAAGSA
QASRLANPAAFVRRIARNLLIDRARRRESDNNIVIFPLDEQRDLSVPPEQTLNLEAADLLRIYEQAVNDLPEKTRRVFMM
SRDEELTYSQISEQLGISMATVQYHMVRAIAFVAAAVKDHR
>Mature_200_residues
SSSAPPFRHHRPPFSVSSGAHNCPVDVFEPACGEASATNLDETFRTERRALLRYLGRRAGHDAAPDLVQEVFARAAGSAQ
ASRLANPAAFVRRIARNLLIDRARRRESDNNIVIFPLDEQRDLSVPPEQTLNLEAADLLRIYEQAVNDLPEKTRRVFMMS
RDEELTYSQISEQLGISMATVQYHMVRAIAFVAAAVKDHR

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790746, Length=127, Percent_Identity=29.1338582677165, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22541; Mature: 22410

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSAPPFRHHRPPFSVSSGAHNCPVDVFEPACGEASATNLDETFRTERRALLRYLGRRA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GHDAAPDLVQEVFARAAGSAQASRLANPAAFVRRIARNLLIDRARRRESDNNIVIFPLDE
CCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
QRDLSVPPEQTLNLEAADLLRIYEQAVNDLPEKTRRVFMMSRDEELTYSQISEQLGISMA
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHH
TVQYHMVRAIAFVAAAVKDHR
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSSAPPFRHHRPPFSVSSGAHNCPVDVFEPACGEASATNLDETFRTERRALLRYLGRRA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
GHDAAPDLVQEVFARAAGSAQASRLANPAAFVRRIARNLLIDRARRRESDNNIVIFPLDE
CCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
QRDLSVPPEQTLNLEAADLLRIYEQAVNDLPEKTRRVFMMSRDEELTYSQISEQLGISMA
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHH
TVQYHMVRAIAFVAAAVKDHR
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA