Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488051

Identifier: 103488051

GI number: 103488051

Start: 2713165

End: 2713815

Strand: Direct

Name: 103488051

Synonym: Sala_2573

Alternate gene names: NA

Gene position: 2713165-2713815 (Clockwise)

Preceding gene: 103488048

Following gene: 103488054

Centisome position: 81.11

GC content: 64.52

Gene sequence:

>651_bases
ATGGCTGGATGCGATGACTGTTGCGCGGCGACCAATGCATCTAACGACCGTCGCTGGCGCCGCGCCTTATGGATCGCGCT
TGGGATCAACGCCGGCATGTTCGCGGGCGAGATGGTGGCCGGCCTTGCCGCAAACTCGCAGGCGCTGCAGGCCGACGCGC
TCGATTTCTTCGGCGACGCCGCCAATTATGCGATCAGCCTCGGGGTTGCCGGCATGGCACTCGTCTGGCGTGCTCGCGCT
GCGCTCGTCAAGGGTGCGACTCTCGGGCTTCTCGGCCTTTACGTGCTGGTTACAACTATTTGGGCAGTGTGGAGCGGAGC
TCTGCCTGAGGCCGAATGGATGGGTGGCGTCGGTCTTCTGGCGCTCGTCGCCAATGGCGCAGTGGCTTTGATGCTATACC
GCTTTCGGGCGGGCGACGCCAATATGCGCTCGGTCTGGATCTGCTCGCGCAATGACGCGATTGGCAATCTCGCCGTCGTC
CTCGCTGCCGCCGGCGTGTTCGGCACCGGCACCGCTTGGCCCGATTTGATCGTCGCGGGAATCATGGCGGCGCTGGGCAT
CAGCGGCGGCGTCCAAATCGTGCGACAGGCCAGAGCCGAACTCGGCCGCTCTCGGACCGTGACAATGCAACAAGGCAGGC
AGCTCATGTGA

Upstream 100 bases:

>100_bases
TCCGAGTTCTCCGATCGTGAGTGCCGCAGTCATCCCCTTGACCTTGTAGCTGCTTCAGGGTGCATATGGGAAGCCGAATC
GAAAGAATCGAGGAGGCAAT

Downstream 100 bases:

>100_bases
ATAGCGGCTCAAATTGAGAAAAGCGTTGGGCGCCGATCGGCACCCGGAAGACGATAGGCGGGCTTTGGTCAGACGCACAC
GTTCACCGGGACGAGCAAGG

Product: cation efflux protein

Products: NA

Alternate protein names: Co/Zn/Cd Efflux System Component; Cation Efflux Family Protein; Cation Efflux System Protein; Cation Efflux Permease; Cation Diffusion Facilitator Family Transporter; Heavy Metal Detoxification Protein; Cation Diffusion Facilitator; Transmembrane Protein; Cation Efflux Protein ; CDF Family Heavy Metal/H(+) Antiporter; Co/Zn/Cd Efflux Protein; RND Efflux System Protein; Co/Zn/Cd Efflux System Protein; Cation Efflux System Permease; Zinc Transporter; CDF Family Cobalt/Cadmium/Zinc Transporter

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MAGCDDCCAATNASNDRRWRRALWIALGINAGMFAGEMVAGLAANSQALQADALDFFGDAANYAISLGVAGMALVWRARA
ALVKGATLGLLGLYVLVTTIWAVWSGALPEAEWMGGVGLLALVANGAVALMLYRFRAGDANMRSVWICSRNDAIGNLAVV
LAAAGVFGTGTAWPDLIVAGIMAALGISGGVQIVRQARAELGRSRTVTMQQGRQLM

Sequences:

>Translated_216_residues
MAGCDDCCAATNASNDRRWRRALWIALGINAGMFAGEMVAGLAANSQALQADALDFFGDAANYAISLGVAGMALVWRARA
ALVKGATLGLLGLYVLVTTIWAVWSGALPEAEWMGGVGLLALVANGAVALMLYRFRAGDANMRSVWICSRNDAIGNLAVV
LAAAGVFGTGTAWPDLIVAGIMAALGISGGVQIVRQARAELGRSRTVTMQQGRQLM
>Mature_215_residues
AGCDDCCAATNASNDRRWRRALWIALGINAGMFAGEMVAGLAANSQALQADALDFFGDAANYAISLGVAGMALVWRARAA
LVKGATLGLLGLYVLVTTIWAVWSGALPEAEWMGGVGLLALVANGAVALMLYRFRAGDANMRSVWICSRNDAIGNLAVVL
AAAGVFGTGTAWPDLIVAGIMAALGISGGVQIVRQARAELGRSRTVTMQQGRQLM

Specific function: Unknown

COG id: COG1230

COG function: function code P; Co/Zn/Cd efflux system component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22446; Mature: 22315

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGCDDCCAATNASNDRRWRRALWIALGINAGMFAGEMVAGLAANSQALQADALDFFGDA
CCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCH
ANYAISLGVAGMALVWRARAALVKGATLGLLGLYVLVTTIWAVWSGALPEAEWMGGVGLL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHH
ALVANGAVALMLYRFRAGDANMRSVWICSRNDAIGNLAVVLAAAGVFGTGTAWPDLIVAG
HHHHCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
IMAALGISGGVQIVRQARAELGRSRTVTMQQGRQLM
HHHHHCCCCHHHHHHHHHHHHCCCCEEEHHCCCCCC
>Mature Secondary Structure 
AGCDDCCAATNASNDRRWRRALWIALGINAGMFAGEMVAGLAANSQALQADALDFFGDA
CCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCH
ANYAISLGVAGMALVWRARAALVKGATLGLLGLYVLVTTIWAVWSGALPEAEWMGGVGLL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHH
ALVANGAVALMLYRFRAGDANMRSVWICSRNDAIGNLAVVLAAAGVFGTGTAWPDLIVAG
HHHHCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
IMAALGISGGVQIVRQARAELGRSRTVTMQQGRQLM
HHHHHCCCCHHHHHHHHHHHHCCCCEEEHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA