| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488048
Identifier: 103488048
GI number: 103488048
Start: 2710933
End: 2711856
Strand: Direct
Name: 103488048
Synonym: Sala_2570
Alternate gene names: NA
Gene position: 2710933-2711856 (Clockwise)
Preceding gene: 103488047
Following gene: 103488051
Centisome position: 81.04
GC content: 59.96
Gene sequence:
>924_bases TTGCAATGTAGTCTGTGGCGGGTCGCCTTGGGGTGGGCAAAGGTATGGCGGTATTCTCGCGCCAAGTCGACGGGCGCCAC CCGGCGACCGGACTGCAGGACGCTGAGAATCTCTGGTTGCTCACACCTCGGATCTGGCGACCTGGAACGGCGGGACACGC ATTCTTGCTCTAGCGCCCGTTCAGGCTTCGCCCAGTTCGGTAAACGCGGCTCACTGATCGATATCGAGGAGAGCTGGCTT CACCCACGGGGTCGATGTAGCCCGCAACTATGTATCGCCGCCCTACTCGACAGCAAAGATCCGATCAGGGTGCTCGGACG CCTCGCGAGGCCGTTGATCGAACAGCGCGCGGGAGATCGCGACGACCATGGTCCAAATGTCGTTTACAGTTACGGAGGAT CGCTGCGTGGCCGAATGCTGCTGCCTACGGGGACGCCGACAACTGTTTGCGGTGTGCCAATGTCCAGCTCGACGCGCCGG ACTCGGCGATGCGAAGGGGCAGTTTCACTGTTCCTAACGTGCACTCGGCGTTCAAAAGCAATTTTTCATATAAGCTTCGG CCCTTTTTCATATAAGCTTCGGCCCTTCCAGAGGGGCGGCATTCAAAACGAGAACGCGATGCGCAAGATCATATGGACCG GCCTGGCCGCGTTGACGATCGCGGTTCCGACGTCGGCGATGGCCCAACATCACGATGACGGATATCGTGGCGGTTACGGT GACGAGGTCTTGGACGACCGCGGCCATGGATATCGGGAGCCGGAGCCCTATTACCGCCATTCGGACCGTTACGCCTATGC TTATCCGGCGTATCCGGCACACCGATACGAGCGGCCTTACCGGTATGATAGTCACCGATATGACCGTCACGATCGGCCGC GCCACCACCGCGAACGACATCATCGTTCGCGCCGGCATCATTGA
Upstream 100 bases:
>100_bases CCTCCTTTGACGCTTTCACACGTGCCGATGATTCGCGCTATTTGCCCTCGGCGAGCGCGGCATATGGCGGAAATGCCAGA GATGGAGAACTTCCACCGCT
Downstream 100 bases:
>100_bases TGCAGATTTCGGGGAATGCGGGGCGGTCAGGCGAGGCAAGCGACGATTGCCGCAATTACGCTAAGGGTTTCTTGCGGATC GCGAACGGAAATCGTATCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MQCSLWRVALGWAKVWRYSRAKSTGATRRPDCRTLRISGCSHLGSGDLERRDTHSCSSARSGFAQFGKRGSLIDIEESWL HPRGRCSPQLCIAALLDSKDPIRVLGRLARPLIEQRAGDRDDHGPNVVYSYGGSLRGRMLLPTGTPTTVCGVPMSSSTRR TRRCEGAVSLFLTCTRRSKAIFHISFGPFSYKLRPFQRGGIQNENAMRKIIWTGLAALTIAVPTSAMAQHHDDGYRGGYG DEVLDDRGHGYREPEPYYRHSDRYAYAYPAYPAHRYERPYRYDSHRYDRHDRPRHHRERHHRSRRHH
Sequences:
>Translated_307_residues MQCSLWRVALGWAKVWRYSRAKSTGATRRPDCRTLRISGCSHLGSGDLERRDTHSCSSARSGFAQFGKRGSLIDIEESWL HPRGRCSPQLCIAALLDSKDPIRVLGRLARPLIEQRAGDRDDHGPNVVYSYGGSLRGRMLLPTGTPTTVCGVPMSSSTRR TRRCEGAVSLFLTCTRRSKAIFHISFGPFSYKLRPFQRGGIQNENAMRKIIWTGLAALTIAVPTSAMAQHHDDGYRGGYG DEVLDDRGHGYREPEPYYRHSDRYAYAYPAYPAHRYERPYRYDSHRYDRHDRPRHHRERHHRSRRHH >Mature_307_residues MQCSLWRVALGWAKVWRYSRAKSTGATRRPDCRTLRISGCSHLGSGDLERRDTHSCSSARSGFAQFGKRGSLIDIEESWL HPRGRCSPQLCIAALLDSKDPIRVLGRLARPLIEQRAGDRDDHGPNVVYSYGGSLRGRMLLPTGTPTTVCGVPMSSSTRR TRRCEGAVSLFLTCTRRSKAIFHISFGPFSYKLRPFQRGGIQNENAMRKIIWTGLAALTIAVPTSAMAQHHDDGYRGGYG DEVLDDRGHGYREPEPYYRHSDRYAYAYPAYPAHRYERPYRYDSHRYDRHDRPRHHRERHHRSRRHH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35235; Mature: 35235
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQCSLWRVALGWAKVWRYSRAKSTGATRRPDCRTLRISGCSHLGSGDLERRDTHSCSSAR CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH SGFAQFGKRGSLIDIEESWLHPRGRCSPQLCIAALLDSKDPIRVLGRLARPLIEQRAGDR HHHHHHCCCCCEEECHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC DDHGPNVVYSYGGSLRGRMLLPTGTPTTVCGVPMSSSTRRTRRCEGAVSLFLTCTRRSKA CCCCCCEEEECCCCCCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHEEEEEEECCCCE IFHISFGPFSYKLRPFQRGGIQNENAMRKIIWTGLAALTIAVPTSAMAQHHDDGYRGGYG EEEEEECCCEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCC DEVLDDRGHGYREPEPYYRHSDRYAYAYPAYPAHRYERPYRYDSHRYDRHDRPRHHRERH CHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHH HRSRRHH HHHHCCC >Mature Secondary Structure MQCSLWRVALGWAKVWRYSRAKSTGATRRPDCRTLRISGCSHLGSGDLERRDTHSCSSAR CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH SGFAQFGKRGSLIDIEESWLHPRGRCSPQLCIAALLDSKDPIRVLGRLARPLIEQRAGDR HHHHHHCCCCCEEECHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC DDHGPNVVYSYGGSLRGRMLLPTGTPTTVCGVPMSSSTRRTRRCEGAVSLFLTCTRRSKA CCCCCCEEEECCCCCCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHEEEEEEECCCCE IFHISFGPFSYKLRPFQRGGIQNENAMRKIIWTGLAALTIAVPTSAMAQHHDDGYRGGYG EEEEEECCCEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCC DEVLDDRGHGYREPEPYYRHSDRYAYAYPAYPAHRYERPYRYDSHRYDRHDRPRHHRERH CHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHH HRSRRHH HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA