| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is galE [C]
Identifier: 103488033
GI number: 103488033
Start: 2693795
End: 2696383
Strand: Direct
Name: galE [C]
Synonym: Sala_2555
Alternate gene names: 103488033
Gene position: 2693795-2696383 (Clockwise)
Preceding gene: 103488032
Following gene: 103488034
Centisome position: 80.53
GC content: 63.65
Gene sequence:
>2589_bases ATGGCCAATGATGACATAGTCCTGATCACCGGCAGCAGCGGATATCTGGGCGCAGCGATCATTCGCAGGCTGGCCGGCAA ATATACGCTGGTCGGCCTCGATCGTCCTGGGGGCCCGGCTCCGCCCTCCCCGGCGCATCAAATCGATCTCGATCTCGGCA GCGATAAGGCGGTGAGCGAGGCGCTTGATCAGGTCCGCGCCAGGTTCGGCGGCCGCATCGCTTCGGTGATCCATCTCGCC GCCTATTATGACGTCTCCGGCGAGCCGAACCCGCTTTACGAGAAGATCACCGTCCAGGGAACGCGCCGGCTGATCGAGGC GCTGAAGGCATTCGAGGTGGAGCAGTTCATCTTCGCCAGCACCATGCTCGTTCACCGGCCGACGGATATGCCGGACGAGC GGATCAACGAGGAATGGCCGATCGATCCGCAGTGGGCCTATCCCGAGTCCAAGGTCCAGGCCGAGCAGCTGCTTCGCGAG AAGCATGGAGAAATCCCGGTCGTCCTTCTCCGCATCGCCGGCGTCTACGACGACATCGGTCATTCGCCGTTCATTGCCCA GCAGATCTCCCGCATCTACGAGCACCGTCTGTCCGCCCGCGTCTATCCGGGGATGCTCTGCGCAAACCAGTCCTTCGTGC ACCTCGACGATCTCACCGACGCGGTCGTCCGGCTGATCGACCGCCGCCGGGACCTCCCGCCCGAGCTGCCGCTGCTGGTC GGCGAGCCGGACGCACTCGGCTATGAAGAGGTGCAGGACATCATCGGCTGCGCCCTCCACGGGGAGGAATGGACTACGAT CCGCATTCCGCAACCGGTCGCCAAGGCCGGTGTCTGGCTCCAGGAGGAAGTCCTTGGCGGGGACAGCTTCATCAAGCCGT GGATGGTCGAGGCCAGCAATGACCATTACATCCTCGACATTGCGCGCGCTCAGTCCCTGCTCGACTGGCAGCCGCGCCAT TCGCTGCGGGACACGCTGCCAAAGATGGTCGCGGCACTGAAGCGCGATCCCACCGGCTGGTATAAGGAGAACAAGCTCAA CCCGGCGCTGGTCGCCTGGTATGGGCAGCGTCCCGCCGCGGCCGACAAGCATCGCGCGCATGGCGGTGCGCCCCGCGCGG ACGAGAGCAAGGATTCCAAGGGCGGCCACGGCGCCATGCCGGCAGGCCACGATCACATGGCGATGATGGAAGCGGACGCG AAAAAACTCCGTTGGGTCTTCTACGCGACTATCGGCCTCGGGCTTTGGCTGGCGGCGAGCCCTTTCGTCTATGACGCAAT CACTACTGCAAACGTCGGCGACGCCGTCCGATGGGTGACGGTCGATCGCGGATTGCCCACCGTCGAATCCCGCGCGGCAG CGCTCAGGATCAGCGACATCGCCAGCGGCCTCCTCATCGCGCTGTTCGGCGCTCTTTCGCTCTCGAAACGCAGCGCATGG TGGGCGCAATGGGCCAGCACCTTCGTCGGCCTGTGGCTGCTGTTTGCGCCGATGATCTTCTGGACGCCGAGCGGAGCGCA ATATCTCAACGACACGCTCATCGGTTCCGCCGTCATAGCCTTTTCGGTCCTCGTGCCGATGATGCCGGGAATGAGCATGG AAGGGATGATGGATCCCAAATCCATACCGCCCGGCTGGACCTACTCTCCCTCGACTTTCGCCCAGCGCCTGCCGATCGCC TATCTCGGCCTCATCGGCCTGCTCATTTCGCGCGTTCTCACGGCTTATCAGCTCGGGCATATCAACAGCGCGTGGGAGCC ATTTTTCGCCGGCGCGCCGACCGATCCGAGGAACGGAGCCGAAGAGATCATAACCTCGGACGTGTCGAAGGCCTGGCCGA TCCCGGATGCGGGCCTTGGCGCGATCAGCTATCTGCTCGAAATCCTGATGGCGGTGATGGGCGGCCGCGACCGGTGGCGA ACCATGCCGTGGATGGTGACCTTCTTCGGCATCCTGGTGATCCCGTTGGGCGTGGTCAGCATCTATTTCATCATCATCCA GCCGATCCTGATCGGCACCTGGTGCACGCTCTGCCTCATTGCCGCGCTTGCCATGCTCATCATGATCCCGTTCGCGCTCG ACGAGGTGATCGCCATGGGCCAGTTCCTCTATTGGGCGAAGTGCCGCGGCAAGCCGCTTATCCGCACGTTCTTCAAAGGC GATGCAGTCGAGGGCGGACAGGAGGATCGTTCGGACGCGCTGAGCAGTCCGAACGCCTTCTGGAGCGACGCATCACGTGG GATCACACTGCCTTGGACGCTCGCCGCAAGCATTGCGATCGGCCTGTTCCTGATGTTCACGCGGCTGGCCTTTGGCACCA GTGGCGCGATGGCCAACAGCGATCACCTCATCGGCGCGCTGACGATAACGGTCGCGGTCATCGCCACGGCGGAAGTCGCC CGTGTGCTCCGGCTGATCAATGCTGGATTCGGCCTGTGGCTGATTGTGGCGCCGTTCCTGCTGGAGGGTGCAGGCGCATC TGCAACCGTCGCCAGCATCGTGCTCGGCATCGCGCTGATCGCCCTCAGCCTTCCCAAGGGCAAGCGCAGCGAGGAGCATT ATGCCGGCTGGGACCGGTTCGTGCTTTAG
Upstream 100 bases:
>100_bases GGTCAGGACCGCGGATAACGAACACTCGCGCCGGGCCACCAGATAACGAATCAGGCACAACCCGTTCGCTCTGATCACCG GTCACGTGAGGAGGTGATCG
Downstream 100 bases:
>100_bases AGGTCTTGGCCGCGTGGCCGGGCGTTTGCCGCTCGGAGACCGGGGCCGAACAGGATTGGGAGAACTGCAATGTCCCGGAT TCCGCGTGACAAAAGCCTGG
Product: vitamin K epoxide reductase
Products: UDPglucoseal [C]
Alternate protein names: DNA Polymerase 3 Epsilon Subunit; NAD-Dependent Epimerase/Dehydratase; DTDP-Glucose 4 6-Dehydratase; UDP-Glucose Epimerase; Nucleoside-Diphosphate-Sugar Epimerase; Nucleotide-Diphosphate-Sugar Epimerase; NAD Dependent Epimerase/Dehydratase Family Protein; Facilitator Superfamily Permease
Number of amino acids: Translated: 862; Mature: 861
Protein sequence:
>862_residues MANDDIVLITGSSGYLGAAIIRRLAGKYTLVGLDRPGGPAPPSPAHQIDLDLGSDKAVSEALDQVRARFGGRIASVIHLA AYYDVSGEPNPLYEKITVQGTRRLIEALKAFEVEQFIFASTMLVHRPTDMPDERINEEWPIDPQWAYPESKVQAEQLLRE KHGEIPVVLLRIAGVYDDIGHSPFIAQQISRIYEHRLSARVYPGMLCANQSFVHLDDLTDAVVRLIDRRRDLPPELPLLV GEPDALGYEEVQDIIGCALHGEEWTTIRIPQPVAKAGVWLQEEVLGGDSFIKPWMVEASNDHYILDIARAQSLLDWQPRH SLRDTLPKMVAALKRDPTGWYKENKLNPALVAWYGQRPAAADKHRAHGGAPRADESKDSKGGHGAMPAGHDHMAMMEADA KKLRWVFYATIGLGLWLAASPFVYDAITTANVGDAVRWVTVDRGLPTVESRAAALRISDIASGLLIALFGALSLSKRSAW WAQWASTFVGLWLLFAPMIFWTPSGAQYLNDTLIGSAVIAFSVLVPMMPGMSMEGMMDPKSIPPGWTYSPSTFAQRLPIA YLGLIGLLISRVLTAYQLGHINSAWEPFFAGAPTDPRNGAEEIITSDVSKAWPIPDAGLGAISYLLEILMAVMGGRDRWR TMPWMVTFFGILVIPLGVVSIYFIIIQPILIGTWCTLCLIAALAMLIMIPFALDEVIAMGQFLYWAKCRGKPLIRTFFKG DAVEGGQEDRSDALSSPNAFWSDASRGITLPWTLAASIAIGLFLMFTRLAFGTSGAMANSDHLIGALTITVAVIATAEVA RVLRLINAGFGLWLIVAPFLLEGAGASATVASIVLGIALIALSLPKGKRSEEHYAGWDRFVL
Sequences:
>Translated_862_residues MANDDIVLITGSSGYLGAAIIRRLAGKYTLVGLDRPGGPAPPSPAHQIDLDLGSDKAVSEALDQVRARFGGRIASVIHLA AYYDVSGEPNPLYEKITVQGTRRLIEALKAFEVEQFIFASTMLVHRPTDMPDERINEEWPIDPQWAYPESKVQAEQLLRE KHGEIPVVLLRIAGVYDDIGHSPFIAQQISRIYEHRLSARVYPGMLCANQSFVHLDDLTDAVVRLIDRRRDLPPELPLLV GEPDALGYEEVQDIIGCALHGEEWTTIRIPQPVAKAGVWLQEEVLGGDSFIKPWMVEASNDHYILDIARAQSLLDWQPRH SLRDTLPKMVAALKRDPTGWYKENKLNPALVAWYGQRPAAADKHRAHGGAPRADESKDSKGGHGAMPAGHDHMAMMEADA KKLRWVFYATIGLGLWLAASPFVYDAITTANVGDAVRWVTVDRGLPTVESRAAALRISDIASGLLIALFGALSLSKRSAW WAQWASTFVGLWLLFAPMIFWTPSGAQYLNDTLIGSAVIAFSVLVPMMPGMSMEGMMDPKSIPPGWTYSPSTFAQRLPIA YLGLIGLLISRVLTAYQLGHINSAWEPFFAGAPTDPRNGAEEIITSDVSKAWPIPDAGLGAISYLLEILMAVMGGRDRWR TMPWMVTFFGILVIPLGVVSIYFIIIQPILIGTWCTLCLIAALAMLIMIPFALDEVIAMGQFLYWAKCRGKPLIRTFFKG DAVEGGQEDRSDALSSPNAFWSDASRGITLPWTLAASIAIGLFLMFTRLAFGTSGAMANSDHLIGALTITVAVIATAEVA RVLRLINAGFGLWLIVAPFLLEGAGASATVASIVLGIALIALSLPKGKRSEEHYAGWDRFVL >Mature_861_residues ANDDIVLITGSSGYLGAAIIRRLAGKYTLVGLDRPGGPAPPSPAHQIDLDLGSDKAVSEALDQVRARFGGRIASVIHLAA YYDVSGEPNPLYEKITVQGTRRLIEALKAFEVEQFIFASTMLVHRPTDMPDERINEEWPIDPQWAYPESKVQAEQLLREK HGEIPVVLLRIAGVYDDIGHSPFIAQQISRIYEHRLSARVYPGMLCANQSFVHLDDLTDAVVRLIDRRRDLPPELPLLVG EPDALGYEEVQDIIGCALHGEEWTTIRIPQPVAKAGVWLQEEVLGGDSFIKPWMVEASNDHYILDIARAQSLLDWQPRHS LRDTLPKMVAALKRDPTGWYKENKLNPALVAWYGQRPAAADKHRAHGGAPRADESKDSKGGHGAMPAGHDHMAMMEADAK KLRWVFYATIGLGLWLAASPFVYDAITTANVGDAVRWVTVDRGLPTVESRAAALRISDIASGLLIALFGALSLSKRSAWW AQWASTFVGLWLLFAPMIFWTPSGAQYLNDTLIGSAVIAFSVLVPMMPGMSMEGMMDPKSIPPGWTYSPSTFAQRLPIAY LGLIGLLISRVLTAYQLGHINSAWEPFFAGAPTDPRNGAEEIITSDVSKAWPIPDAGLGAISYLLEILMAVMGGRDRWRT MPWMVTFFGILVIPLGVVSIYFIIIQPILIGTWCTLCLIAALAMLIMIPFALDEVIAMGQFLYWAKCRGKPLIRTFFKGD AVEGGQEDRSDALSSPNAFWSDASRGITLPWTLAASIAIGLFLMFTRLAFGTSGAMANSDHLIGALTITVAVIATAEVAR VLRLINAGFGLWLIVAPFLLEGAGASATVASIVLGIALIALSLPKGKRSEEHYAGWDRFVL
Specific function: Galactose metabolism; third step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 5.1.3.2 [C]
Molecular weight: Translated: 94275; Mature: 94144
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANDDIVLITGSSGYLGAAIIRRLAGKYTLVGLDRPGGPAPPSPAHQIDLDLGSDKAVSE CCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHH ALDQVRARFGGRIASVIHLAAYYDVSGEPNPLYEKITVQGTRRLIEALKAFEVEQFIFAS HHHHHHHHHCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMLVHRPTDMPDERINEEWPIDPQWAYPESKVQAEQLLREKHGEIPVVLLRIAGVYDDIG HHHEECCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCC HSPFIAQQISRIYEHRLSARVYPGMLCANQSFVHLDDLTDAVVRLIDRRRDLPPELPLLV CCCHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEHHHHHHHHHHHHHHHCCCCCCCCEEE GEPDALGYEEVQDIIGCALHGEEWTTIRIPQPVAKAGVWLQEEVLGGDSFIKPWMVEASN CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCHHHHHHCCCCCCCCCEEEECCC DHYILDIARAQSLLDWQPRHSLRDTLPKMVAALKRDPTGWYKENKLNPALVAWYGQRPAA CCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCC ADKHRAHGGAPRADESKDSKGGHGAMPAGHDHMAMMEADAKKLRWVFYATIGLGLWLAAS CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PFVYDAITTANVGDAVRWVTVDRGLPTVESRAAALRISDIASGLLIALFGALSLSKRSAW CHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WAQWASTFVGLWLLFAPMIFWTPSGAQYLNDTLIGSAVIAFSVLVPMMPGMSMEGMMDPK HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SIPPGWTYSPSTFAQRLPIAYLGLIGLLISRVLTAYQLGHINSAWEPFFAGAPTDPRNGA CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH EEIITSDVSKAWPIPDAGLGAISYLLEILMAVMGGRDRWRTMPWMVTFFGILVIPLGVVS HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHH IYFIIIQPILIGTWCTLCLIAALAMLIMIPFALDEVIAMGQFLYWAKCRGKPLIRTFFKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC DAVEGGQEDRSDALSSPNAFWSDASRGITLPWTLAASIAIGLFLMFTRLAFGTSGAMANS CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DHLIGALTITVAVIATAEVARVLRLINAGFGLWLIVAPFLLEGAGASATVASIVLGIALI CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH ALSLPKGKRSEEHYAGWDRFVL HHCCCCCCCCCHHHCCCHHCCC >Mature Secondary Structure ANDDIVLITGSSGYLGAAIIRRLAGKYTLVGLDRPGGPAPPSPAHQIDLDLGSDKAVSE CCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHH ALDQVRARFGGRIASVIHLAAYYDVSGEPNPLYEKITVQGTRRLIEALKAFEVEQFIFAS HHHHHHHHHCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMLVHRPTDMPDERINEEWPIDPQWAYPESKVQAEQLLREKHGEIPVVLLRIAGVYDDIG HHHEECCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCC HSPFIAQQISRIYEHRLSARVYPGMLCANQSFVHLDDLTDAVVRLIDRRRDLPPELPLLV CCCHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEHHHHHHHHHHHHHHHCCCCCCCCEEE GEPDALGYEEVQDIIGCALHGEEWTTIRIPQPVAKAGVWLQEEVLGGDSFIKPWMVEASN CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCHHHHHHCCCCCCCCCEEEECCC DHYILDIARAQSLLDWQPRHSLRDTLPKMVAALKRDPTGWYKENKLNPALVAWYGQRPAA CCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCC ADKHRAHGGAPRADESKDSKGGHGAMPAGHDHMAMMEADAKKLRWVFYATIGLGLWLAAS CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PFVYDAITTANVGDAVRWVTVDRGLPTVESRAAALRISDIASGLLIALFGALSLSKRSAW CHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WAQWASTFVGLWLLFAPMIFWTPSGAQYLNDTLIGSAVIAFSVLVPMMPGMSMEGMMDPK HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SIPPGWTYSPSTFAQRLPIAYLGLIGLLISRVLTAYQLGHINSAWEPFFAGAPTDPRNGA CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH EEIITSDVSKAWPIPDAGLGAISYLLEILMAVMGGRDRWRTMPWMVTFFGILVIPLGVVS HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHH IYFIIIQPILIGTWCTLCLIAALAMLIMIPFALDEVIAMGQFLYWAKCRGKPLIRTFFKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC DAVEGGQEDRSDALSSPNAFWSDASRGITLPWTLAASIAIGLFLMFTRLAFGTSGAMANS CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DHLIGALTITVAVIATAEVARVLRLINAGFGLWLIVAPFLLEGAGASATVASIVLGIALI CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH ALSLPKGKRSEEHYAGWDRFVL HHCCCCCCCCCHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 57600 [C]
Specific activity: 233.3
Km value (mM): 0.256 {UDPgalactose}} 0.225 {UDPgalactose}} 0.2 {UDPgalactose}} 0.18 {UDPgalactose}} 0.16 {UDPgalactose}} 0.14 {UDPgalactose}} 0.048 {UDPgalactose}} 0.026 {UDPgalactose}} [C]
Substrates: UDPglucose [C]
Specific reaction: UDPglucose <==> UDPglucoseal [C]
General reaction: Epimerization (specificity for carbon forming a hexosulose) [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA