| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is fecR [C]
Identifier: 103488009
GI number: 103488009
Start: 2665555
End: 2666544
Strand: Direct
Name: fecR [C]
Synonym: Sala_2530
Alternate gene names: 103488009
Gene position: 2665555-2666544 (Clockwise)
Preceding gene: 103488008
Following gene: 103488010
Centisome position: 79.68
GC content: 67.07
Gene sequence:
>990_bases ATGACGAAGGCCGGCGACGACGATTATCCGGTCGACGAGGTTGCGCGGGCTTGGCTCGTCAAGATGCGCGGCGAGGATGC GGAGGTGCTGCGCGGCGAATTCGACGCGTGGTTACAAGCATCTGCAGAACATCGCGAAGCCTATCGGCACGCCGAAAAGC GGATGGCGGCGCTTGCGATCCTCAAGACGTCACAGCGCCACGGAACCACGCATGCCGAGGCGCGCCGCGGCCCGATGCGC GGCTGGTTCACATGGGGAGCGGTCGCTACTGCGTTCGCGCTCCTGATCATCGCGATCGGGGCCGCGGGCGCCCCCTTTCC CGGCCAGCCAGGCGGCGGCGCGACGGCTTTTGCCGCCGAACCTCTCGAGACGCAGCGCGGCGAGATTCGCACCTTCCGGC TCGTCGACGGTTCGCGCGCGACGCTCGACACCGACAGCCGGCTCGACGTGGCCTTTTCGCATGGCGAACGAAGCGTTCGT CTCGTGAGGGGCCGGGTTAGACTGTCGGTCGCGCCGGGCGATGTGCCACTCCGGATCGAGGCCGGGCGCGGCGAAGCGAC GGCAAACGATGCGGAAATCGATCTGCGTCTCGCCGCATCGGGGAGAGTGGTCGCATCGCTGCGCCGCGGCGCAGCAGAGG TACGCGCGGATGCAGACGTCGATCAGACCATGCCCCTCAAGGCGGGAAGCGCTCTCGCCTATGGACCCGGCAACCGGTTG GAACCTGTCGCGGCGCCGGCGGCCGTCATTCAGCCAGACTGGACCGAAGGTTGGGCAGATTATCGATCGATCAAACTCGG CGCGCTCGTCGCGGAAGCCAATCGCTACGCTGCGGTGCCGATCGTGATCGACGAAAGCGCAACAGCCGCCCGCGAAGTGT CGGGCCGCTTCCACATCAGCCAGACCGACGCTTTCGCCGAGCGGATCGCCATATTGTTCGGTCTCGCCGTCGAACGGAGG TCTGACGCCATCCACCTCCGCCGCCGATAA
Upstream 100 bases:
>100_bases ATCGCGAGATACATGAACAGCTCGGCATCAGCATTGCGACGGTGGAATATCATATGATGAAGGCGCTCGGTCGGATCGCG AAGGTGGTGGACAGCGAGAA
Downstream 100 bases:
>100_bases ATTTTTTACCGAGCGACTAAGGTCGCTCCTATCTTCCCGTCATCGCACCCCCACTGGCCGTCTGCCTGATGCACGGCCGA GAATATTGGGGGAGTGAAAA
Product: putative FecR
Products: NA
Alternate protein names: Anti-FecI Sigma Factor FecR; FecR Family Protein
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MTKAGDDDYPVDEVARAWLVKMRGEDAEVLRGEFDAWLQASAEHREAYRHAEKRMAALAILKTSQRHGTTHAEARRGPMR GWFTWGAVATAFALLIIAIGAAGAPFPGQPGGGATAFAAEPLETQRGEIRTFRLVDGSRATLDTDSRLDVAFSHGERSVR LVRGRVRLSVAPGDVPLRIEAGRGEATANDAEIDLRLAASGRVVASLRRGAAEVRADADVDQTMPLKAGSALAYGPGNRL EPVAAPAAVIQPDWTEGWADYRSIKLGALVAEANRYAAVPIVIDESATAAREVSGRFHISQTDAFAERIAILFGLAVERR SDAIHLRRR
Sequences:
>Translated_329_residues MTKAGDDDYPVDEVARAWLVKMRGEDAEVLRGEFDAWLQASAEHREAYRHAEKRMAALAILKTSQRHGTTHAEARRGPMR GWFTWGAVATAFALLIIAIGAAGAPFPGQPGGGATAFAAEPLETQRGEIRTFRLVDGSRATLDTDSRLDVAFSHGERSVR LVRGRVRLSVAPGDVPLRIEAGRGEATANDAEIDLRLAASGRVVASLRRGAAEVRADADVDQTMPLKAGSALAYGPGNRL EPVAAPAAVIQPDWTEGWADYRSIKLGALVAEANRYAAVPIVIDESATAAREVSGRFHISQTDAFAERIAILFGLAVERR SDAIHLRRR >Mature_328_residues TKAGDDDYPVDEVARAWLVKMRGEDAEVLRGEFDAWLQASAEHREAYRHAEKRMAALAILKTSQRHGTTHAEARRGPMRG WFTWGAVATAFALLIIAIGAAGAPFPGQPGGGATAFAAEPLETQRGEIRTFRLVDGSRATLDTDSRLDVAFSHGERSVRL VRGRVRLSVAPGDVPLRIEAGRGEATANDAEIDLRLAASGRVVASLRRGAAEVRADADVDQTMPLKAGSALAYGPGNRLE PVAAPAAVIQPDWTEGWADYRSIKLGALVAEANRYAAVPIVIDESATAAREVSGRFHISQTDAFAERIAILFGLAVERRS DAIHLRRR
Specific function: Regulation Of Iron Dicitrate Transport. In The Absence Of Citrate Fecr Inactivates Feci. Fecr Is Probably A Sensor That Recognizes Iron Dicitrate In The Periplasm. [C]
COG id: COG3712
COG function: function code PT; Fe2+-dicitrate sensor, membrane component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35449; Mature: 35318
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKAGDDDYPVDEVARAWLVKMRGEDAEVLRGEFDAWLQASAEHREAYRHAEKRMAALAI CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LKTSQRHGTTHAEARRGPMRGWFTWGAVATAFALLIIAIGAAGAPFPGQPGGGATAFAAE HHHHCCCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECC PLETQRGEIRTFRLVDGSRATLDTDSRLDVAFSHGERSVRLVRGRVRLSVAPGDVPLRIE CCCCCCCCEEEEEEECCCCCEECCCCCEEEEECCCCCEEEEEEEEEEEEECCCCEEEEEE AGRGEATANDAEIDLRLAASGRVVASLRRGAAEVRADADVDQTMPLKAGSALAYGPGNRL CCCCCCCCCCCEEEEEEECCCHHHHHHHHCHHHHHCCCCCCCCCCCCCCCEEEECCCCCC EPVAAPAAVIQPDWTEGWADYRSIKLGALVAEANRYAAVPIVIDESATAAREVSGRFHIS CCCCCCCEEECCCCCCCHHHHHHEEHHEEEECCCCEEEEEEEECCCCHHHHHCCCCEEEE QTDAFAERIAILFGLAVERRSDAIHLRRR HHHHHHHHHHHHHHHHHHCCCCCEEECCC >Mature Secondary Structure TKAGDDDYPVDEVARAWLVKMRGEDAEVLRGEFDAWLQASAEHREAYRHAEKRMAALAI CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LKTSQRHGTTHAEARRGPMRGWFTWGAVATAFALLIIAIGAAGAPFPGQPGGGATAFAAE HHHHCCCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECC PLETQRGEIRTFRLVDGSRATLDTDSRLDVAFSHGERSVRLVRGRVRLSVAPGDVPLRIE CCCCCCCCEEEEEEECCCCCEECCCCCEEEEECCCCCEEEEEEEEEEEEECCCCEEEEEE AGRGEATANDAEIDLRLAASGRVVASLRRGAAEVRADADVDQTMPLKAGSALAYGPGNRL CCCCCCCCCCCEEEEEEECCCHHHHHHHHCHHHHHCCCCCCCCCCCCCCCEEEECCCCCC EPVAAPAAVIQPDWTEGWADYRSIKLGALVAEANRYAAVPIVIDESATAAREVSGRFHIS CCCCCCCEEECCCCCCCHHHHHHEEHHEEEECCCCEEEEEEEECCCCHHHHHCCCCEEEE QTDAFAERIAILFGLAVERRSDAIHLRRR HHHHHHHHHHHHHHHHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA