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The map label for this gene is yncC [C]

Identifier: 103488007

GI number: 103488007

Start: 2664084

End: 2664695

Strand: Direct

Name: yncC [C]

Synonym: Sala_2528

Alternate gene names: 103488007

Gene position: 2664084-2664695 (Clockwise)

Preceding gene: 103488006

Following gene: 103488008

Centisome position: 79.64

GC content: 65.03

Gene sequence:

>612_bases
ATGAGCCCCGCGCACGTGTTCGAGCCGACCTATGAGGCGATCAAGCGCCGGCTGATGACAGGCGAATGGGCAACTGGTGC
CAGAATCGAGGCCGCGCGTCTCGCCGATGACCTCGGGGTCAGCATGACCCCGGTACGCGACGGTCTCTACCGCCTCAATG
GCGAGCGCATGGTCGACTTCACGCCGGGCGACGGCTTTCATGTTCACCGCCTTACCGAGACCGAGTTTCGCGACCTGCTC
GAGCTGCACCTGGTCCTGCAACTCGCCGCGCTCGCGACAGCGCCAAATCGGCTGGCAACGCCGGTGAGCGCCGATCAGCC
CTATCCCGATCGGATCGCCGATCTGTTCCTGGCGGTGGCGGATCGATCTTCGAACTCCGAGATCGTCGCCAACATCGCCG
CAATCGGTGACCGGCTCCAGTTCTCGCGGCATTTCGACGCCGCGATCCTTGGCGATGTCGAGGCTGAATATAAATTGCTC
GAGGCGGCCATTGTCGATGCCGCACCGCAGACCGAGATGCGGAGCCTGCTGCTCGGCTATCATGAGCGGCGCGCGCGCGA
GGCCAATGCCTATGCGCGCGCACTCGCAGCGCATCCCGGCCGCCAGTCCTGA

Upstream 100 bases:

>100_bases
TGACCGATGAAAGGCCCGCCCATCTCGGCGCGATCGATGCCCTGCGTCCCGACCAGGCCGAGGCGGTCGCCACCTTCGCC
GCCACCGAAAGGACAGGCGC

Downstream 100 bases:

>100_bases
GCGGCCAATATTGCCGGATCGACGCTTTTGCTTGTCACAGCCGCCCGCAATTGACATGATTCGGGCGCGCGGGAGCATTG
CTGGCAGCTTTCGCGCGAAC

Product: regulatory protein GntR, HTH

Products: NA

Alternate protein names: Regulatory Protein GntR HTH

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MSPAHVFEPTYEAIKRRLMTGEWATGARIEAARLADDLGVSMTPVRDGLYRLNGERMVDFTPGDGFHVHRLTETEFRDLL
ELHLVLQLAALATAPNRLATPVSADQPYPDRIADLFLAVADRSSNSEIVANIAAIGDRLQFSRHFDAAILGDVEAEYKLL
EAAIVDAAPQTEMRSLLLGYHERRAREANAYARALAAHPGRQS

Sequences:

>Translated_203_residues
MSPAHVFEPTYEAIKRRLMTGEWATGARIEAARLADDLGVSMTPVRDGLYRLNGERMVDFTPGDGFHVHRLTETEFRDLL
ELHLVLQLAALATAPNRLATPVSADQPYPDRIADLFLAVADRSSNSEIVANIAAIGDRLQFSRHFDAAILGDVEAEYKLL
EAAIVDAAPQTEMRSLLLGYHERRAREANAYARALAAHPGRQS
>Mature_202_residues
SPAHVFEPTYEAIKRRLMTGEWATGARIEAARLADDLGVSMTPVRDGLYRLNGERMVDFTPGDGFHVHRLTETEFRDLLE
LHLVLQLAALATAPNRLATPVSADQPYPDRIADLFLAVADRSSNSEIVANIAAIGDRLQFSRHFDAAILGDVEAEYKLLE
AAIVDAAPQTEMRSLLLGYHERRAREANAYARALAAHPGRQS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22420; Mature: 22288

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAHVFEPTYEAIKRRLMTGEWATGARIEAARLADDLGVSMTPVRDGLYRLNGERMVDF
CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHEEECCCEEEEE
TPGDGFHVHRLTETEFRDLLELHLVLQLAALATAPNRLATPVSADQPYPDRIADLFLAVA
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHH
DRSSNSEIVANIAAIGDRLQFSRHFDAAILGDVEAEYKLLEAAIVDAAPQTEMRSLLLGY
CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
HERRAREANAYARALAAHPGRQS
HHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SPAHVFEPTYEAIKRRLMTGEWATGARIEAARLADDLGVSMTPVRDGLYRLNGERMVDF
CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHEEECCCEEEEE
TPGDGFHVHRLTETEFRDLLELHLVLQLAALATAPNRLATPVSADQPYPDRIADLFLAVA
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHH
DRSSNSEIVANIAAIGDRLQFSRHFDAAILGDVEAEYKLLEAAIVDAAPQTEMRSLLLGY
CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
HERRAREANAYARALAAHPGRQS
HHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA