| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is traI [H]
Identifier: 103487968
GI number: 103487968
Start: 2627631
End: 2630441
Strand: Reverse
Name: traI [H]
Synonym: Sala_2489
Alternate gene names: 103487968
Gene position: 2630441-2627631 (Counterclockwise)
Preceding gene: 103487969
Following gene: 103487964
Centisome position: 78.63
GC content: 67.59
Gene sequence:
>2811_bases ATGGTCGCGTCGGTATCGGCGCTGACGAGTTCGGCGCAGGCGAGCAGCTATTATGAGGCCGACGATTATTATGCCGAGGG CGGGCTGTCGCCGTCCGAATGGCAAGGCAAGGGCGCCGAGGAGCTTGGGCTGTCGGGCGATGTCGATCGCGACCAATTTC GGGAACTGCTCGACGGCAAGGTCGCGGGCCAGCAACTCGGCACGGTTCGTGACGGCCAGCTTGAGCATCGGCCCGGCTGG GATGTGACACTGAGTGCGCCCAAGTCGGTGTCGATCATGGCCGAGGTCGCGGGCGACCGGCGGTTGATCGAGGCACATGG GCAGGCCGTGAAGACGACGCTCGCGCATATCGAGGCGCATATGGCCGCGACCCGCGTTCGGCACGGCGGCAGCGTGACGC GTGAGGCCACCGGCAATCTCGTTGTCGCCGGCTTTCAGCACGGGACCAGCCGGGCGCAGGACCCGCAGCTTCATACGCAT AATGTCATCATGAACGCGACGCAGGGCGAAGATGGTTCATGGCGCAGCCTCGAACCGCGCGCCATCTATCAGCTCCAGAA GCAGATCGGCGCGATCTACCGGCAGGAGCTGGCCTTGAAGGTCGGCGAGCTCGGCTATGAGATTGCACCGGGCAAGGAGT CGATGTTCGAAATCAAAGGCGTCTCGGAGGCCGCGATGGCGGCGTTCAGCACGCGCAGCGCCGAGATTGAAGCGGCGCTA GGCGAACGCGGAACATCGCGCGAAGAGGCCAGCGCTGCCGAAAAGCAGGTGGCCGCGCTCGATACGCGGCAAGCGAAGGT GGTGGCCGACCATGGCGCGCTTGTTGCCGATTGGCGCGAGACCGCCGACCGGGCAGGGTTCGACGCCGAGGCTCGGCTGG CGTTGGTGCGTGAGGCAGAAGCTCGGGCAGCGAACGGTGTTCAGCTTCCCGATCCATCGGTCGCCGATCGCGCCGTCGCC CATGCCGCCGACAAGCTTGGCGAGCGGCAGTCGGTGTTTGCGGTCGCGGCGCTCCATGAGGAAGCGGGCCGGGTTGGGCT TGGGAAGGTCGGCTATTCCGAGATCGGCGAAGCGATCGGGCGGGCGACAAAGGAAGGCGAGCTGGTCGAGCGCACCTTCC TCGATCGGCGCGGCGCCGCGTTCGCGGGGTTCACGACCAGCCAGAATATCGCCGCCGAGAAGACGCTGCTTCGGATCGAA GCCCGCGGTCGCGGTGCGCTCGCGCCGATAGCCTCCCCGCTTGCCGCCGCCAAGGCTGTCGCTGGCGCGGCCGCGCAGGC GGAGCGGTCGGGGTTTGGCTGGAATCCCGACCAGAAGGCCGCGACCGAACAGCTCCTTACCAGCCGCAATCGGGTCACCG CGGTCCAAGGCTATGCTGGCACCGCCAAGACGACGACGGTGCTCGCCACCTTCGCGCGCGAGGCCGAAGCGCGCGGCGTG TCGGTGGTCGCGCTGGCGCCGACTGCATCGGCGGCGATGACACTCGGCGAGGCGCTCGGCACGCGCGGCGATACCGTGGC GCGCCATCTGCTCGCGCCGGAAGATTCGGCGCCCGGGCAGCCGGTGGCATGGATCGTCGATGAGGCTTCGCTCTTGTCGG CGCGCGATACCGCGCGGCTGTTCGAGTTGGCCGAGCAGCATGATGCCCGAATCATTCTCGTCGGCGACGTGAAGCAGCTT GGATCGGTCGAGGCTGGCGCGGCGTTCGCGCAGCTTCAGGGCGTCGGCATGGAAACCGCAAAGCTCGGCGAGATCGTTCG GCAGAGCAACGCGGCTACCAAGGAGGCGGTGCTCGCCTCGATCGAGGGCGATGCGAAGAAGGCGCTCGCGGCGCTCGATC GCGGGGGCGGCCAGATCGTCGAACATGCCGATCGCTCCGGCCGCTTCGCCGCCATCGCCGATCGCTATGCCGGGCTCGAC AAGGCGGCGCGGACGCGAACGCTGGTCATTGAGCCCTCGCGCGAAGGGCGCGACGCGCTGACAGCAGGCATCCGCACGGC GCTCGTCAATTCGGGCGCGCTTTCCGGTCCCGCTGTCACGATGGAGAGCCTCGTCAACAAGGGGCTCACCCGTGCCGAGG CCCGCGATCCGTTGAGCTATGACAGGGGCGATGTTGTGCGCTTCACCCGCGATTATGCCGACAAGGGCGTAGCGCGCGGC GACGCCTATCGTGTCGAGGCGGTCAATCCGGCCAAGGCTGCCATTGCACTGAGGTCCGAGGATGGGCGCGAGGTCGATTG GCGGCTTCGGCAATGGGGCGCCGGCAAGGTGCAGGTGTTCGCGCCGCAGAATATTGACCTCAGGACCGGCGACAGCATCC GCTTCACCCGCAACGATCGCGACGCCGGGCGGATCAATGGCGCGCGGGGCGAGGTGATCGCGGTGGACGAGCAGGCGCGG ACGGCGACGGTGCTTGGCGCGCGCGGTCAGGTACAGACTCTCGACCTCGATGCCGTGCGCGACCGGCATATCGCCCACGC TTATGTCGATACCGCTTTTGCCGCGCAGGGACGCACCGCCGATCATGTCATAATCCACGCGGACAGCAAGGCGACCAATC TGGTCGACCAGAAAAGCTTCTATGTCGGCATCTCGCGCGCAAAGGAGTCGGCGACGATCGTCACCGACGATCGCGCAAAA CTGACGTCGGCGATCAATGAGCGCGCCGGGGCCGTCCAGACCGCGCTCTCACAGGCACCTGCCGCCGGGGCCGGCATGGT GCAATCAGCCATCGCCGCGCCCGCTGCTGACAAGGCGATCAGCGCCGCGGTCTCGCAAGCGGCGACGTCGCTGCCCGGCA TGGGGCTTTAG
Upstream 100 bases:
>100_bases CACCGCCGGTTGAAGCGGAGCCCGCCGTGCAACCATCGACGGTGCCGCCCACCGAGCCGGAGCCGCCGAAACCACAGCCG AGCGGCGACGGACCAGTCTG
Downstream 100 bases:
>100_bases CTCTTGCCAAAGCTCGCGGTTCTTTGACGAAGAGTTGCCGAACGGGAGCCGCCGAAATCAACCATTCTTTCCGTTCGGTG GTGGTCATTCATCGCCTTCC
Product: TrwC protein
Products: NA
Alternate protein names: DNA helicase I [H]
Number of amino acids: Translated: 936; Mature: 936
Protein sequence:
>936_residues MVASVSALTSSAQASSYYEADDYYAEGGLSPSEWQGKGAEELGLSGDVDRDQFRELLDGKVAGQQLGTVRDGQLEHRPGW DVTLSAPKSVSIMAEVAGDRRLIEAHGQAVKTTLAHIEAHMAATRVRHGGSVTREATGNLVVAGFQHGTSRAQDPQLHTH NVIMNATQGEDGSWRSLEPRAIYQLQKQIGAIYRQELALKVGELGYEIAPGKESMFEIKGVSEAAMAAFSTRSAEIEAAL GERGTSREEASAAEKQVAALDTRQAKVVADHGALVADWRETADRAGFDAEARLALVREAEARAANGVQLPDPSVADRAVA HAADKLGERQSVFAVAALHEEAGRVGLGKVGYSEIGEAIGRATKEGELVERTFLDRRGAAFAGFTTSQNIAAEKTLLRIE ARGRGALAPIASPLAAAKAVAGAAAQAERSGFGWNPDQKAATEQLLTSRNRVTAVQGYAGTAKTTTVLATFAREAEARGV SVVALAPTASAAMTLGEALGTRGDTVARHLLAPEDSAPGQPVAWIVDEASLLSARDTARLFELAEQHDARIILVGDVKQL GSVEAGAAFAQLQGVGMETAKLGEIVRQSNAATKEAVLASIEGDAKKALAALDRGGGQIVEHADRSGRFAAIADRYAGLD KAARTRTLVIEPSREGRDALTAGIRTALVNSGALSGPAVTMESLVNKGLTRAEARDPLSYDRGDVVRFTRDYADKGVARG DAYRVEAVNPAKAAIALRSEDGREVDWRLRQWGAGKVQVFAPQNIDLRTGDSIRFTRNDRDAGRINGARGEVIAVDEQAR TATVLGARGQVQTLDLDAVRDRHIAHAYVDTAFAAQGRTADHVIIHADSKATNLVDQKSFYVGISRAKESATIVTDDRAK LTSAINERAGAVQTALSQAPAAGAGMVQSAIAAPAADKAISAAVSQAATSLPGMGL
Sequences:
>Translated_936_residues MVASVSALTSSAQASSYYEADDYYAEGGLSPSEWQGKGAEELGLSGDVDRDQFRELLDGKVAGQQLGTVRDGQLEHRPGW DVTLSAPKSVSIMAEVAGDRRLIEAHGQAVKTTLAHIEAHMAATRVRHGGSVTREATGNLVVAGFQHGTSRAQDPQLHTH NVIMNATQGEDGSWRSLEPRAIYQLQKQIGAIYRQELALKVGELGYEIAPGKESMFEIKGVSEAAMAAFSTRSAEIEAAL GERGTSREEASAAEKQVAALDTRQAKVVADHGALVADWRETADRAGFDAEARLALVREAEARAANGVQLPDPSVADRAVA HAADKLGERQSVFAVAALHEEAGRVGLGKVGYSEIGEAIGRATKEGELVERTFLDRRGAAFAGFTTSQNIAAEKTLLRIE ARGRGALAPIASPLAAAKAVAGAAAQAERSGFGWNPDQKAATEQLLTSRNRVTAVQGYAGTAKTTTVLATFAREAEARGV SVVALAPTASAAMTLGEALGTRGDTVARHLLAPEDSAPGQPVAWIVDEASLLSARDTARLFELAEQHDARIILVGDVKQL GSVEAGAAFAQLQGVGMETAKLGEIVRQSNAATKEAVLASIEGDAKKALAALDRGGGQIVEHADRSGRFAAIADRYAGLD KAARTRTLVIEPSREGRDALTAGIRTALVNSGALSGPAVTMESLVNKGLTRAEARDPLSYDRGDVVRFTRDYADKGVARG DAYRVEAVNPAKAAIALRSEDGREVDWRLRQWGAGKVQVFAPQNIDLRTGDSIRFTRNDRDAGRINGARGEVIAVDEQAR TATVLGARGQVQTLDLDAVRDRHIAHAYVDTAFAAQGRTADHVIIHADSKATNLVDQKSFYVGISRAKESATIVTDDRAK LTSAINERAGAVQTALSQAPAAGAGMVQSAIAAPAADKAISAAVSQAATSLPGMGL >Mature_936_residues MVASVSALTSSAQASSYYEADDYYAEGGLSPSEWQGKGAEELGLSGDVDRDQFRELLDGKVAGQQLGTVRDGQLEHRPGW DVTLSAPKSVSIMAEVAGDRRLIEAHGQAVKTTLAHIEAHMAATRVRHGGSVTREATGNLVVAGFQHGTSRAQDPQLHTH NVIMNATQGEDGSWRSLEPRAIYQLQKQIGAIYRQELALKVGELGYEIAPGKESMFEIKGVSEAAMAAFSTRSAEIEAAL GERGTSREEASAAEKQVAALDTRQAKVVADHGALVADWRETADRAGFDAEARLALVREAEARAANGVQLPDPSVADRAVA HAADKLGERQSVFAVAALHEEAGRVGLGKVGYSEIGEAIGRATKEGELVERTFLDRRGAAFAGFTTSQNIAAEKTLLRIE ARGRGALAPIASPLAAAKAVAGAAAQAERSGFGWNPDQKAATEQLLTSRNRVTAVQGYAGTAKTTTVLATFAREAEARGV SVVALAPTASAAMTLGEALGTRGDTVARHLLAPEDSAPGQPVAWIVDEASLLSARDTARLFELAEQHDARIILVGDVKQL GSVEAGAAFAQLQGVGMETAKLGEIVRQSNAATKEAVLASIEGDAKKALAALDRGGGQIVEHADRSGRFAAIADRYAGLD KAARTRTLVIEPSREGRDALTAGIRTALVNSGALSGPAVTMESLVNKGLTRAEARDPLSYDRGDVVRFTRDYADKGVARG DAYRVEAVNPAKAAIALRSEDGREVDWRLRQWGAGKVQVFAPQNIDLRTGDSIRFTRNDRDAGRINGARGEVIAVDEQAR TATVLGARGQVQTLDLDAVRDRHIAHAYVDTAFAAQGRTADHVIIHADSKATNLVDQKSFYVGISRAKESATIVTDDRAK LTSAINERAGAVQTALSQAPAAGAGMVQSAIAAPAADKAISAAVSQAATSLPGMGL
Specific function: TraI has been identified as DNA helicase I and it also has an additional activity of site-specific nicking at oriT. DNA helicase I is a potent DNA-dependent ATPase [H]
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To traI of plasmid IncFII R100 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014059 - InterPro: IPR014129 - InterPro: IPR009767 - InterPro: IPR014862 [H]
Pfam domain/function: PF07057 TraI; PF08751 TrwC [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 98339; Mature: 98339
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVASVSALTSSAQASSYYEADDYYAEGGLSPSEWQGKGAEELGLSGDVDRDQFRELLDGK CCCCHHHHHHHHHHCCCCCCCCHHHCCCCCHHHCCCCCHHHCCCCCCCCHHHHHHHHCCH VAGQQLGTVRDGQLEHRPGWDVTLSAPKSVSIMAEVAGDRRLIEAHGQAVKTTLAHIEAH HHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHHH MAATRVRHGGSVTREATGNLVVAGFQHGTSRAQDPQLHTHNVIMNATQGEDGSWRSLEPR HHHHHHHCCCCCCEECCCCEEEEEECCCCCCCCCCCCEECEEEEEECCCCCCCCCCCCHH AIYQLQKQIGAIYRQELALKVGELGYEIAPGKESMFEIKGVSEAAMAAFSTRSAEIEAAL HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHEEECCCCHHHHHHHHCCCCHHHHHH GERGTSREEASAAEKQVAALDTRQAKVVADHGALVADWRETADRAGFDAEARLALVREAE CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHCCCCHHHHHHHHHHHH ARAANGVQLPDPSVADRAVAHAADKLGERQSVFAVAALHEEAGRVGLGKVGYSEIGEAIG HHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH RATKEGELVERTFLDRRGAAFAGFTTSQNIAAEKTLLRIEARGRGALAPIASPLAAAKAV CCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHEEEEEEECCCCCCCCHHHHHHHHHHHH AGAAAQAERSGFGWNPDQKAATEQLLTSRNRVTAVQGYAGTAKTTTVLATFAREAEARGV HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE SVVALAPTASAAMTLGEALGTRGDTVARHLLAPEDSAPGQPVAWIVDEASLLSARDTARL EEEEECCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHH FELAEQHDARIILVGDVKQLGSVEAGAAFAQLQGVGMETAKLGEIVRQSNAATKEAVLAS HHHHHHCCCEEEEEECHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH IEGDAKKALAALDRGGGQIVEHADRSGRFAAIADRYAGLDKAARTRTLVIEPSREGRDAL CCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEHHHHHCCCCHHHCCEEEEECCCCCCHHHH TAGIRTALVNSGALSGPAVTMESLVNKGLTRAEARDPLSYDRGDVVRFTRDYADKGVARG HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEHHHHHHHHCCCCCC DAYRVEAVNPAKAAIALRSEDGREVDWRLRQWGAGKVQVFAPQNIDLRTGDSIRFTRNDR CCEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCEECCCCEEEECCCC DAGRINGARGEVIAVDEQARTATVLGARGQVQTLDLDAVRDRHIAHAYVDTAFAAQGRTA CCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCC DHVIIHADSKATNLVDQKSFYVGISRAKESATIVTDDRAKLTSAINERAGAVQTALSQAP CEEEEECCCCHHHHHHCCHHEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCC AAGAGMVQSAIAAPAADKAISAAVSQAATSLPGMGL CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MVASVSALTSSAQASSYYEADDYYAEGGLSPSEWQGKGAEELGLSGDVDRDQFRELLDGK CCCCHHHHHHHHHHCCCCCCCCHHHCCCCCHHHCCCCCHHHCCCCCCCCHHHHHHHHCCH VAGQQLGTVRDGQLEHRPGWDVTLSAPKSVSIMAEVAGDRRLIEAHGQAVKTTLAHIEAH HHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHHH MAATRVRHGGSVTREATGNLVVAGFQHGTSRAQDPQLHTHNVIMNATQGEDGSWRSLEPR HHHHHHHCCCCCCEECCCCEEEEEECCCCCCCCCCCCEECEEEEEECCCCCCCCCCCCHH AIYQLQKQIGAIYRQELALKVGELGYEIAPGKESMFEIKGVSEAAMAAFSTRSAEIEAAL HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHEEECCCCHHHHHHHHCCCCHHHHHH GERGTSREEASAAEKQVAALDTRQAKVVADHGALVADWRETADRAGFDAEARLALVREAE CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHCCCCHHHHHHHHHHHH ARAANGVQLPDPSVADRAVAHAADKLGERQSVFAVAALHEEAGRVGLGKVGYSEIGEAIG HHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH RATKEGELVERTFLDRRGAAFAGFTTSQNIAAEKTLLRIEARGRGALAPIASPLAAAKAV CCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHEEEEEEECCCCCCCCHHHHHHHHHHHH AGAAAQAERSGFGWNPDQKAATEQLLTSRNRVTAVQGYAGTAKTTTVLATFAREAEARGV HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE SVVALAPTASAAMTLGEALGTRGDTVARHLLAPEDSAPGQPVAWIVDEASLLSARDTARL EEEEECCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHH FELAEQHDARIILVGDVKQLGSVEAGAAFAQLQGVGMETAKLGEIVRQSNAATKEAVLAS HHHHHHCCCEEEEEECHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH IEGDAKKALAALDRGGGQIVEHADRSGRFAAIADRYAGLDKAARTRTLVIEPSREGRDAL CCCHHHHHHHHHHCCCCHHHHHCCCCCCEEEHHHHHCCCCHHHCCEEEEECCCCCCHHHH TAGIRTALVNSGALSGPAVTMESLVNKGLTRAEARDPLSYDRGDVVRFTRDYADKGVARG HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEHHHHHHHHCCCCCC DAYRVEAVNPAKAAIALRSEDGREVDWRLRQWGAGKVQVFAPQNIDLRTGDSIRFTRNDR CCEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCEECCCCEEEECCCC DAGRINGARGEVIAVDEQARTATVLGARGQVQTLDLDAVRDRHIAHAYVDTAFAAQGRTA CCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCC DHVIIHADSKATNLVDQKSFYVGISRAKESATIVTDDRAKLTSAINERAGAVQTALSQAP CEEEEECCCCHHHHHHCCHHEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCC AAGAGMVQSAIAAPAADKAISAAVSQAATSLPGMGL CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2163400; 7915817; 2680768; 2164585; 8736534 [H]