| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is trbE [H]
Identifier: 103487962
GI number: 103487962
Start: 2620969
End: 2623413
Strand: Reverse
Name: trbE [H]
Synonym: Sala_2483
Alternate gene names: 103487962
Gene position: 2623413-2620969 (Counterclockwise)
Preceding gene: 103487963
Following gene: 103487961
Centisome position: 78.42
GC content: 65.77
Gene sequence:
>2445_bases ATGATGAATCTCTCCGAATATCGCACGAAATCCGCCCGCCTCGCTGACTTTCTCCCTTGGGTCTGCCTGGTGGCGGAGGG CGTGGTGCTGAACAAGGATGGCTCCTTCCAGCGCACGGCGCGCTTCCGCGGGCCCGACCTCGACAGCGCCACGCCCGCCG AACTTGTCGCGGTCACGTCGCGGCTCAACAACACGCTGCGCCGGCTGGGATCAGGCTGGGCCGTGTTCGTCGAGGCGCAG CGGGTCCCGGCCATGACCTATCCCGTGTCCGAGTTCCCCGACCCGGTATCGGAACTCGTCGATATCGAACGCCGCGAGCA GTTCCGCGAGGAGGGGGCGCATTTCGAGAGCTTCTATTATCTGACCTTGCTCTGGATGCCGCCCGCCGAGGAGGCGGCGC GCGCCGAGGCCTGGCTCTACGAGGGCCGTTCGAAGACGGGCGTCGATGCGCAGGAATTGCTGAAAAGCTTCGCCGATCGC ACCGAGCGCGTGCTGCATCTTGTCGAGGGCTTCATGCCTGAGGTCGAATGGCTCGGTGACGGCGAGACGCTGACCTATCT GCACAGCTGCATCTCGACCAAGGCCCAGCGCGTCCGCGTGCCCGAAACGCCGGCCTATCTCGACGCGCTGCTCGCCGACG AGGCGCTGGTCGGCGGTCTCGAGCCGCGGCTCGGCGACCATCATCTGCGCACGCTCACCATAACCGGCTTTCCGAGCGTA ACCTTCCCGGGGCTGCTCGACGAACTCAACCGCCAGGCCTTCGGCTATCGCTGGTCGTCGCGCGCGATCATGCTCGACAA AACCGACGCGACCAAGCTGCTGACCAAGATTCGCCGGCAATGGTTCGCCAAGCGCAAGTCCGTCGCCGCAATCCTCAAGG AAGTGATGACCAACGAGGCGTCGGTCCTGATGGACAGCGATGCCTCGAACAAGGCGGCCGACGCCGACATGGCGTTGCAG GAGCTGGGCGCCGACGAAGCGGGTATCGCCTATGTCACAGCGACGATCACGGTTTGGGACCGCGATCCGGCCTTGGCGGC CGAGAAGCTGCGGCTGGTCGAGAAGATCGTCCAGAGCCGCGACTTCACCTGCACCGTCGAGGGCGTGAACGCGCTCGAAG CCTGGTTCGGGAGCCTGCCGGGCCATGTCTATGCCAATGTCCGTCAGCCCCCGGTCTCGACGCTCAATCTCGCCCATCTG ATCCCGCTGTCGGCGGTGTGGGCGGGGGCGGAACGGGACGAGCATTTCGGTCAGTCCCCCTTGCTTTACGGCAAGACCGA AGGTTCGACCCCGTTCCGCCTTTCGCTGCATGTCGGCGATGTCGGTCACTGCCTCGTCGTCGGTCCGACCGGCGCCGGCA AGTCGGTGCTTCTGGCGCTGATGGCGATGCAGTTCCGCCGCTATGAAGGCAGCCAGATCTTCGCCTTCGATTATGGCGGA TCGATCCGCGCCGCGGCGCTTGGCATGGGCGGCGACTGGCAGGATCTCGGCGGCGCGCTTCACGACGCGGGGAGCGACGG GTCGGTGGCGCTCCAGCCGCTCGCGCGGATCGACGAACCGGCCGAGCGCGCATGGGCCGCCGAATGGCTTGCGGCGCTGC TCACGGGCGAAGGCGTTGCGGTCGATCCGGCGGCGAAGGAGCATCTCTGGTCGGCATTGACTTCGCTCGCGACCGCGCCG GTTACCGAGCGAACGCTCACTGGACTCGCCGTCTTGCTCCAGTCGCAGGAACTGAAGCTCGCCCTTTCGCCATATCTCGT TGGCGGCCCATGGGGTCGCCTGCTCGATGCCGAGGTCGAGCATCTGGGCTCCGCGCGGGTGCAGGCGCTTGAAACCGAAG GCTTGGTCGGCGCTTCGTCGGCGGCGACGGTCCTCTCCTATCTGTTCCACCGCATCGAGAGACGCCTCGACGGCTCGCCG ACGTTGATCATCATCGACGAAGGCTGGCTCGTTCTCGACAGCCCCGCCTTCGCCGCGCAACTGCGCGAATGGCTCAAGAC GCTCCGCAAGAAGAATGCGAGCGTGATCTTCGCGACGCAGAGCCTCGCCGATATCGAAGGGTCGAGCATCGCGCCCGCGA TCATCGAAAGCTGCCCGACACGGATATTCCTGCCGAACGAGCGCGCCGCTGAGCCGCAGATCGCGCGGGTCTATGACCGC TTCGGCCTGAACAGCAGACAGGTGGAGATATTGAGCCGGGCGACGCCGAAGCGTGACTATTATTGCCAGTCACGGCGCGG CAACCGACTGTTCGACCTTGGCCTCGGCGACATCGCGCTCGCCTTTGCCGCCGCCTCTTCGAAATCCGACCAGATTCGCA TCGGCGAGCTGATGGCCGCGCATGGCCAAGACCAGTTCGCGGCGGCCTGGCTTCGCCATCGCGGCCTCGAATGGGCCGCC GATCTGCTCGGCAATCTTGAAATCGCAGCCCCCCTGAAGGAGTGA
Upstream 100 bases:
>100_bases GGGCGGTCGGTCATGCCCTCGCTGTCTGGGCCGCCCGCCGCGACCCCCAGTTCGTCGACGTCGCCCGGCGTCACCTCAAA TATCCTGTCTGGATGCGCCC
Downstream 100 bases:
>100_bases ATAGGATGAAGACAAGCTTTTATCGCCGCACAGCGCTGGCCGGCCTGATCGCGATCACGATGCTGTCGGCGGGCGCAGTG ATCACCCCCGCATCGGCGCA
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 814; Mature: 814
Protein sequence:
>814_residues MMNLSEYRTKSARLADFLPWVCLVAEGVVLNKDGSFQRTARFRGPDLDSATPAELVAVTSRLNNTLRRLGSGWAVFVEAQ RVPAMTYPVSEFPDPVSELVDIERREQFREEGAHFESFYYLTLLWMPPAEEAARAEAWLYEGRSKTGVDAQELLKSFADR TERVLHLVEGFMPEVEWLGDGETLTYLHSCISTKAQRVRVPETPAYLDALLADEALVGGLEPRLGDHHLRTLTITGFPSV TFPGLLDELNRQAFGYRWSSRAIMLDKTDATKLLTKIRRQWFAKRKSVAAILKEVMTNEASVLMDSDASNKAADADMALQ ELGADEAGIAYVTATITVWDRDPALAAEKLRLVEKIVQSRDFTCTVEGVNALEAWFGSLPGHVYANVRQPPVSTLNLAHL IPLSAVWAGAERDEHFGQSPLLYGKTEGSTPFRLSLHVGDVGHCLVVGPTGAGKSVLLALMAMQFRRYEGSQIFAFDYGG SIRAAALGMGGDWQDLGGALHDAGSDGSVALQPLARIDEPAERAWAAEWLAALLTGEGVAVDPAAKEHLWSALTSLATAP VTERTLTGLAVLLQSQELKLALSPYLVGGPWGRLLDAEVEHLGSARVQALETEGLVGASSAATVLSYLFHRIERRLDGSP TLIIIDEGWLVLDSPAFAAQLREWLKTLRKKNASVIFATQSLADIEGSSIAPAIIESCPTRIFLPNERAAEPQIARVYDR FGLNSRQVEILSRATPKRDYYCQSRRGNRLFDLGLGDIALAFAAASSKSDQIRIGELMAAHGQDQFAAAWLRHRGLEWAA DLLGNLEIAAPLKE
Sequences:
>Translated_814_residues MMNLSEYRTKSARLADFLPWVCLVAEGVVLNKDGSFQRTARFRGPDLDSATPAELVAVTSRLNNTLRRLGSGWAVFVEAQ RVPAMTYPVSEFPDPVSELVDIERREQFREEGAHFESFYYLTLLWMPPAEEAARAEAWLYEGRSKTGVDAQELLKSFADR TERVLHLVEGFMPEVEWLGDGETLTYLHSCISTKAQRVRVPETPAYLDALLADEALVGGLEPRLGDHHLRTLTITGFPSV TFPGLLDELNRQAFGYRWSSRAIMLDKTDATKLLTKIRRQWFAKRKSVAAILKEVMTNEASVLMDSDASNKAADADMALQ ELGADEAGIAYVTATITVWDRDPALAAEKLRLVEKIVQSRDFTCTVEGVNALEAWFGSLPGHVYANVRQPPVSTLNLAHL IPLSAVWAGAERDEHFGQSPLLYGKTEGSTPFRLSLHVGDVGHCLVVGPTGAGKSVLLALMAMQFRRYEGSQIFAFDYGG SIRAAALGMGGDWQDLGGALHDAGSDGSVALQPLARIDEPAERAWAAEWLAALLTGEGVAVDPAAKEHLWSALTSLATAP VTERTLTGLAVLLQSQELKLALSPYLVGGPWGRLLDAEVEHLGSARVQALETEGLVGASSAATVLSYLFHRIERRLDGSP TLIIIDEGWLVLDSPAFAAQLREWLKTLRKKNASVIFATQSLADIEGSSIAPAIIESCPTRIFLPNERAAEPQIARVYDR FGLNSRQVEILSRATPKRDYYCQSRRGNRLFDLGLGDIALAFAAASSKSDQIRIGELMAAHGQDQFAAAWLRHRGLEWAA DLLGNLEIAAPLKE >Mature_814_residues MMNLSEYRTKSARLADFLPWVCLVAEGVVLNKDGSFQRTARFRGPDLDSATPAELVAVTSRLNNTLRRLGSGWAVFVEAQ RVPAMTYPVSEFPDPVSELVDIERREQFREEGAHFESFYYLTLLWMPPAEEAARAEAWLYEGRSKTGVDAQELLKSFADR TERVLHLVEGFMPEVEWLGDGETLTYLHSCISTKAQRVRVPETPAYLDALLADEALVGGLEPRLGDHHLRTLTITGFPSV TFPGLLDELNRQAFGYRWSSRAIMLDKTDATKLLTKIRRQWFAKRKSVAAILKEVMTNEASVLMDSDASNKAADADMALQ ELGADEAGIAYVTATITVWDRDPALAAEKLRLVEKIVQSRDFTCTVEGVNALEAWFGSLPGHVYANVRQPPVSTLNLAHL IPLSAVWAGAERDEHFGQSPLLYGKTEGSTPFRLSLHVGDVGHCLVVGPTGAGKSVLLALMAMQFRRYEGSQIFAFDYGG SIRAAALGMGGDWQDLGGALHDAGSDGSVALQPLARIDEPAERAWAAEWLAALLTGEGVAVDPAAKEHLWSALTSLATAP VTERTLTGLAVLLQSQELKLALSPYLVGGPWGRLLDAEVEHLGSARVQALETEGLVGASSAATVLSYLFHRIERRLDGSP TLIIIDEGWLVLDSPAFAAQLREWLKTLRKKNASVIFATQSLADIEGSSIAPAIIESCPTRIFLPNERAAEPQIARVYDR FGLNSRQVEILSRATPKRDYYCQSRRGNRLFDLGLGDIALAFAAASSKSDQIRIGELMAAHGQDQFAAAWLRHRGLEWAA DLLGNLEIAAPLKE
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 89158; Mature: 89158
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNLSEYRTKSARLADFLPWVCLVAEGVVLNKDGSFQRTARFRGPDLDSATPAELVAVTS CCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHH RLNNTLRRLGSGWAVFVEAQRVPAMTYPVSEFPDPVSELVDIERREQFREEGAHFESFYY HHHHHHHHHCCCEEEEEEECCCCCEECCHHHCCCHHHHHHHHHHHHHHHHCCCCHHEEEE LTLLWMPPAEEAARAEAWLYEGRSKTGVDAQELLKSFADRTERVLHLVEGFMPEVEWLGD EEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC GETLTYLHSCISTKAQRVRVPETPAYLDALLADEALVGGLEPRLGDHHLRTLTITGFPSV CHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC TFPGLLDELNRQAFGYRWSSRAIMLDKTDATKLLTKIRRQWFAKRKSVAAILKEVMTNEA CCCHHHHHHHHHHCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SVLMDSDASNKAADADMALQELGADEAGIAYVTATITVWDRDPALAAEKLRLVEKIVQSR CEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCC DFTCTVEGVNALEAWFGSLPGHVYANVRQPPVSTLNLAHLIPLSAVWAGAERDEHFGQSP CCEEEECCCHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCC LLYGKTEGSTPFRLSLHVGDVGHCLVVGPTGAGKSVLLALMAMQFRRYEGSQIFAFDYGG EEEECCCCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC SIRAAALGMGGDWQDLGGALHDAGSDGSVALQPLARIDEPAERAWAAEWLAALLTGEGVA CEEEEEECCCCCHHHHCHHHHCCCCCCCEEHHHHHHCCCHHHHHHHHHHHHHHHCCCCCE VDPAAKEHLWSALTSLATAPVTERTLTGLAVLLQSQELKLALSPYLVGGPWGRLLDAEVE ECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCEEECCCHHHHHHHHHH HLGSARVQALETEGLVGASSAATVLSYLFHRIERRLDGSPTLIIIDEGWLVLDSPAFAAQ HCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCHHHHH LREWLKTLRKKNASVIFATQSLADIEGSSIAPAIIESCPTRIFLPNERAAEPQIARVYDR HHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHCCCEEECCCCCCCCCHHHHHHHH FGLNSRQVEILSRATPKRDYYCQSRRGNRLFDLGLGDIALAFAAASSKSDQIRIGELMAA HCCCCHHHHHHHHCCCCCCCEECCCCCCEEEECCCHHHHHHHHHCCCCCCCEEHHHHHHH HGQDQFAAAWLRHRGLEWAADLLGNLEIAAPLKE CCCHHHHHHHHHHCCHHHHHHHHCCCEEECCCCC >Mature Secondary Structure MMNLSEYRTKSARLADFLPWVCLVAEGVVLNKDGSFQRTARFRGPDLDSATPAELVAVTS CCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHH RLNNTLRRLGSGWAVFVEAQRVPAMTYPVSEFPDPVSELVDIERREQFREEGAHFESFYY HHHHHHHHHCCCEEEEEEECCCCCEECCHHHCCCHHHHHHHHHHHHHHHHCCCCHHEEEE LTLLWMPPAEEAARAEAWLYEGRSKTGVDAQELLKSFADRTERVLHLVEGFMPEVEWLGD EEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC GETLTYLHSCISTKAQRVRVPETPAYLDALLADEALVGGLEPRLGDHHLRTLTITGFPSV CHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC TFPGLLDELNRQAFGYRWSSRAIMLDKTDATKLLTKIRRQWFAKRKSVAAILKEVMTNEA CCCHHHHHHHHHHCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SVLMDSDASNKAADADMALQELGADEAGIAYVTATITVWDRDPALAAEKLRLVEKIVQSR CEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCC DFTCTVEGVNALEAWFGSLPGHVYANVRQPPVSTLNLAHLIPLSAVWAGAERDEHFGQSP CCEEEECCCHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCC LLYGKTEGSTPFRLSLHVGDVGHCLVVGPTGAGKSVLLALMAMQFRRYEGSQIFAFDYGG EEEECCCCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC SIRAAALGMGGDWQDLGGALHDAGSDGSVALQPLARIDEPAERAWAAEWLAALLTGEGVA CEEEEEECCCCCHHHHCHHHHCCCCCCCEEHHHHHHCCCHHHHHHHHHHHHHHHCCCCCE VDPAAKEHLWSALTSLATAPVTERTLTGLAVLLQSQELKLALSPYLVGGPWGRLLDAEVE ECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCEEECCCHHHHHHHHHH HLGSARVQALETEGLVGASSAATVLSYLFHRIERRLDGSPTLIIIDEGWLVLDSPAFAAQ HCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCHHHHH LREWLKTLRKKNASVIFATQSLADIEGSSIAPAIIESCPTRIFLPNERAAEPQIARVYDR HHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHCCCEEECCCCCCCCCHHHHHHHH FGLNSRQVEILSRATPKRDYYCQSRRGNRLFDLGLGDIALAFAAASSKSDQIRIGELMAA HCCCCHHHHHHHHCCCCCCCEECCCCCCEEEECCCHHHHHHHHHCCCCCCCEEHHHHHHH HGQDQFAAAWLRHRGLEWAADLLGNLEIAAPLKE CCCHHHHHHHHHHCCHHHHHHHHCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]