| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487925
Identifier: 103487925
GI number: 103487925
Start: 2583828
End: 2584148
Strand: Direct
Name: 103487925
Synonym: Sala_2446
Alternate gene names: NA
Gene position: 2583828-2584148 (Clockwise)
Preceding gene: 103487924
Following gene: 103487926
Centisome position: 77.24
GC content: 66.04
Gene sequence:
>321_bases ATGGCTGGTGCGATGATGCGACTGCTGGTGATTGTGGGCGTGCTGCTTTGCACCCTGCAATTCTGTGAGCCCGCGTCCGC GCATATTGCCGATCAAGGCACCGCCTATTCGCTGGACAGGGACGGCGGCAAGCAAGTGCCGGGCGAACCGGCAAAGAAAT TCGCCCATAGCGGCCATCATCATTGCCCCATGGCGCCGGACCAGCATCAGACGGTCAGCGAAGCCCCGCTGGCCCCGGCG CGTGGGCCACTATTTGCCGCGCCGGTCGTGCAGCGACCATCGCGCGTCCTGCCGCCCCTTCTCGACCCGCCCCTCGCCTG A
Upstream 100 bases:
>100_bases GGGCGCGGGTCAGCGCGTTCCAACCCATGGCGATTCCATCCGATCTGGCCGCCGCGATGTCACGCCGCGACAAACAGATG ACGGGTCGATAGGGGGCTTT
Downstream 100 bases:
>100_bases CGTCTTGACGGGCTCGCGCATTCGCGCGGCGATCTATCGGCTCAATCGAGGATGGAATTATGTACAGGATCGTTGTTGCC CTCGTGGCAGCCACATCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 106; Mature: 105
Protein sequence:
>106_residues MAGAMMRLLVIVGVLLCTLQFCEPASAHIADQGTAYSLDRDGGKQVPGEPAKKFAHSGHHHCPMAPDQHQTVSEAPLAPA RGPLFAAPVVQRPSRVLPPLLDPPLA
Sequences:
>Translated_106_residues MAGAMMRLLVIVGVLLCTLQFCEPASAHIADQGTAYSLDRDGGKQVPGEPAKKFAHSGHHHCPMAPDQHQTVSEAPLAPA RGPLFAAPVVQRPSRVLPPLLDPPLA >Mature_105_residues AGAMMRLLVIVGVLLCTLQFCEPASAHIADQGTAYSLDRDGGKQVPGEPAKKFAHSGHHHCPMAPDQHQTVSEAPLAPAR GPLFAAPVVQRPSRVLPPLLDPPLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11175; Mature: 11044
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGAMMRLLVIVGVLLCTLQFCEPASAHIADQGTAYSLDRDGGKQVPGEPAKKFAHSGHH CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCCCC HCPMAPDQHQTVSEAPLAPARGPLFAAPVVQRPSRVLPPLLDPPLA CCCCCCCCCCCCCCCCCCCCCCCEEECHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure AGAMMRLLVIVGVLLCTLQFCEPASAHIADQGTAYSLDRDGGKQVPGEPAKKFAHSGHH CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCCCC HCPMAPDQHQTVSEAPLAPARGPLFAAPVVQRPSRVLPPLLDPPLA CCCCCCCCCCCCCCCCCCCCCCCEEECHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA