| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is cusB [H]
Identifier: 103487919
GI number: 103487919
Start: 2577388
End: 2578614
Strand: Direct
Name: cusB [H]
Synonym: Sala_2440
Alternate gene names: 103487919
Gene position: 2577388-2578614 (Clockwise)
Preceding gene: 103487918
Following gene: 103487920
Centisome position: 77.05
GC content: 67.24
Gene sequence:
>1227_bases ATGACCGATGCAACATCAGCGGCGCGCTGGCGCGTCGCAATCCTGGCCACGGTGCTGATCGCGGGCGGCGGCGGTTATTG GTTGGGACAGAGCGGCAAGAGCGATGCACCAACCGAGACGGCAAGCGGCGGGCGCAAGATCCTCTACTATTATGATCCGA TGTTCCCGAACCAGAAGTTCGACAAGCCCGGCAAGTCGCCCTTCATGGACATGCAGCTCGAGCCCAAATATGCCGACGAG GGTGGCGGCGCGGCGCCCGGCGTGTCGATTGACCCGTCGGCGCGTCAGAGCCTCGGCATAAGAGTGGTCGCGGCCGAAAT GGGGAGCCTTGCCGCAACCTTCGACGTCAACGGCAGTATCGATTTCAACCAGCGCGATGTCGCGATCGTCCAGGCGCGCT CGGGCGGCTTCGTCGAACGCGTCTATCGCCTCGCGCCTGGCGATGTCATCGGCGCCGGTGCGCCGATCGCCGAATTGCAA TTGCCTGAATGGGGCAGCGCCCAGACCGAATATCTGAGCGTCAAGAAGCTCGGCAAACCTGAACTCACGGCGGCCGCGCG GCAGCGGCTGCGGCTGATGGGCATGCCCGAAGGCGTGATCGCCGAGGTCGACCGGAGCGGACGGACCGGCGGCAGACTGA CGGTGCGCGCGCCGATCGGCGGCGTGGTCCAGACGCTCAATGCCCGTGCAGGCGTGACTCTCGCCTCGGGGCAGACACTT GCCGAAATCTCGGGACTTGGAACGGTGTGGCTCAATGCCGCGCTCCCCGAAGCGCAGGCCGGACTGGTGAAGATCGGCCA ACCTGCCACCGCGAACCTCACCGCCTTTCCCGGCGAGGCTTTTACCGGGCGGGTCGTCGCGATCCTGCCGACCGCAGCGG CGGACAGCCGGACGCTGACAGTGCGCATCGAGCTCGCCAACCGCGGCGGTCGCCTACGCCCCGGCATGTTCGCCGTCGTC GCGCTCGGCGGGGACGCCAAGCCAACGCTGCTGGTGCCAAGCGAAGCGGTGATCCGCACCGGCACGCGCAGCATCGTGAT GCTCGAGAAGGGCGACGGACGCTACCATCCCGCCGAAGTGGTCGCCGGACGCGAAGGCGGCGGCAAGACCGAGATATTGC GAGGGCTCGCCCCCGGCGAGAAGGTCGTCGCGTCGGGCCAGTTCCTGCTCGATTCCGAGGCGAGCCTGACCGGTCTCACG GTTCGTCCGCTGGAGCCAGCGCAATGA
Upstream 100 bases:
>100_bases CTCTCGCGCTTGCCGAGGCCGAAGTCGATGCGCTGGCGCGCGAAGCCGAGGTCGCGCGCGACGCGATCCGGATCAATTAT ATTTATGGGGAGGCAGGTCG
Downstream 100 bases:
>100_bases TCGCACGCATTATTCGCGCCTCGGTCGCGGCGCGCGGGCTTGTCGTCGCTTCGGCGCTGATCCTGACCTTGCTCGGGATC GCCGCGGTGCGCACGACTCC
Product: secretion protein HlyD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MTDATSAARWRVAILATVLIAGGGGYWLGQSGKSDAPTETASGGRKILYYYDPMFPNQKFDKPGKSPFMDMQLEPKYADE GGGAAPGVSIDPSARQSLGIRVVAAEMGSLAATFDVNGSIDFNQRDVAIVQARSGGFVERVYRLAPGDVIGAGAPIAELQ LPEWGSAQTEYLSVKKLGKPELTAAARQRLRLMGMPEGVIAEVDRSGRTGGRLTVRAPIGGVVQTLNARAGVTLASGQTL AEISGLGTVWLNAALPEAQAGLVKIGQPATANLTAFPGEAFTGRVVAILPTAAADSRTLTVRIELANRGGRLRPGMFAVV ALGGDAKPTLLVPSEAVIRTGTRSIVMLEKGDGRYHPAEVVAGREGGGKTEILRGLAPGEKVVASGQFLLDSEASLTGLT VRPLEPAQ
Sequences:
>Translated_408_residues MTDATSAARWRVAILATVLIAGGGGYWLGQSGKSDAPTETASGGRKILYYYDPMFPNQKFDKPGKSPFMDMQLEPKYADE GGGAAPGVSIDPSARQSLGIRVVAAEMGSLAATFDVNGSIDFNQRDVAIVQARSGGFVERVYRLAPGDVIGAGAPIAELQ LPEWGSAQTEYLSVKKLGKPELTAAARQRLRLMGMPEGVIAEVDRSGRTGGRLTVRAPIGGVVQTLNARAGVTLASGQTL AEISGLGTVWLNAALPEAQAGLVKIGQPATANLTAFPGEAFTGRVVAILPTAAADSRTLTVRIELANRGGRLRPGMFAVV ALGGDAKPTLLVPSEAVIRTGTRSIVMLEKGDGRYHPAEVVAGREGGGKTEILRGLAPGEKVVASGQFLLDSEASLTGLT VRPLEPAQ >Mature_407_residues TDATSAARWRVAILATVLIAGGGGYWLGQSGKSDAPTETASGGRKILYYYDPMFPNQKFDKPGKSPFMDMQLEPKYADEG GGAAPGVSIDPSARQSLGIRVVAAEMGSLAATFDVNGSIDFNQRDVAIVQARSGGFVERVYRLAPGDVIGAGAPIAELQL PEWGSAQTEYLSVKKLGKPELTAAARQRLRLMGMPEGVIAEVDRSGRTGGRLTVRAPIGGVVQTLNARAGVTLASGQTLA EISGLGTVWLNAALPEAQAGLVKIGQPATANLTAFPGEAFTGRVVAILPTAAADSRTLTVRIELANRGGRLRPGMFAVVA LGGDAKPTLLVPSEAVIRTGTRSIVMLEKGDGRYHPAEVVAGREGGGKTEILRGLAPGEKVVASGQFLLDSEASLTGLTV RPLEPAQ
Specific function: Part of a cation efflux system that mediates resistance to copper and silver [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI1786787, Length=395, Percent_Identity=41.5189873417722, Blast_Score=302, Evalue=3e-83,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42398; Mature: 42267
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDATSAARWRVAILATVLIAGGGGYWLGQSGKSDAPTETASGGRKILYYYDPMFPNQKF CCCCCCHHHHHHHEEEEHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC DKPGKSPFMDMQLEPKYADEGGGAAPGVSIDPSARQSLGIRVVAAEMGSLAATFDVNGSI CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCEEEEEECCCEE DFNQRDVAIVQARSGGFVERVYRLAPGDVIGAGAPIAELQLPEWGSAQTEYLSVKKLGKP CCCCCCEEEEEECCCCHHHHHHHHCCCCEEECCCCHHEEECCCCCCCCHHEEEHHHCCCC ELTAAARQRLRLMGMPEGVIAEVDRSGRTGGRLTVRAPIGGVVQTLNARAGVTLASGQTL HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCEEEECCCCE AEISGLGTVWLNAALPEAQAGLVKIGQPATANLTAFPGEAFTGRVVAILPTAAADSRTLT EHHHCCCEEEEECCCCCCCCCEEEECCCCCCCEEECCCCCCCCEEEEEEECCCCCCEEEE VRIELANRGGRLRPGMFAVVALGGDAKPTLLVPSEAVIRTGTRSIVMLEKGDGRYHPAEV EEEEEECCCCCCCCCEEEEEEECCCCCCEEECCCHHHEECCCCEEEEEECCCCCCCCHHE VAGREGGGKTEILRGLAPGEKVVASGQFLLDSEASLTGLTVRPLEPAQ EECCCCCCHHHHHHCCCCCCCEEECCCEEEECCCCEEEEEECCCCCCC >Mature Secondary Structure TDATSAARWRVAILATVLIAGGGGYWLGQSGKSDAPTETASGGRKILYYYDPMFPNQKF CCCCCHHHHHHHEEEEHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC DKPGKSPFMDMQLEPKYADEGGGAAPGVSIDPSARQSLGIRVVAAEMGSLAATFDVNGSI CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCEEEEEECCCEE DFNQRDVAIVQARSGGFVERVYRLAPGDVIGAGAPIAELQLPEWGSAQTEYLSVKKLGKP CCCCCCEEEEEECCCCHHHHHHHHCCCCEEECCCCHHEEECCCCCCCCHHEEEHHHCCCC ELTAAARQRLRLMGMPEGVIAEVDRSGRTGGRLTVRAPIGGVVQTLNARAGVTLASGQTL HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCEEEECCCCE AEISGLGTVWLNAALPEAQAGLVKIGQPATANLTAFPGEAFTGRVVAILPTAAADSRTLT EHHHCCCEEEEECCCCCCCCCEEEECCCCCCCEEECCCCCCCCEEEEEEECCCCCCEEEE VRIELANRGGRLRPGMFAVVALGGDAKPTLLVPSEAVIRTGTRSIVMLEKGDGRYHPAEV EEEEEECCCCCCCCCEEEEEEECCCCCCEEECCCHHHEECCCCEEEEEECCCCCCCCHHE VAGREGGGKTEILRGLAPGEKVVASGQFLLDSEASLTGLTVRPLEPAQ EECCCCCCHHHHHHCCCCCCCEEECCCEEEECCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]