| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487900
Identifier: 103487900
GI number: 103487900
Start: 2557624
End: 2558067
Strand: Reverse
Name: 103487900
Synonym: Sala_2420
Alternate gene names: NA
Gene position: 2558067-2557624 (Counterclockwise)
Preceding gene: 103487901
Following gene: 103487899
Centisome position: 76.47
GC content: 56.53
Gene sequence:
>444_bases GTGAAACCAGCCTATCGCAGCCTCGCGCTGCAGACGATCGTCAGCGGCGTCATCATGTATCTGGTGATGTTCGTCATGAT CGACCGCCTCTCGAGCTTCTACAATAATCTCAACATGCTCTACATGACGCTGATGATGGTCTCGCCGATGGTCGTGCTGA TGATCGTCGCAATGCCGGGCATGTTCCCGTCGAAACGTCTCAATACGTTCCTGCTGCTGGGATCGGCAGTTGCCTTCTTC GGGAGCTTCGGGCTCATCCGGACACAGACGACGATCGGCGACACGGCCTTCTTGCGTTCGATGATCCCGCATCACTCGGG CGCGATCCTCATGTGTGAACAGGCTTCTCTCAAAGATGCCGAGATACGCGAACTCTGCCGCGGCATCATCGCGGGGCAGG CGGCCGAAATCGAACAGATGAAATCCATTCTCGCGAGGAAATGA
Upstream 100 bases:
>100_bases GCGCCGCGGGCGAGGATGCGAGCGGCGTCAGCTTCGTGATGGGGGTGCGGGCCTGGTTCTAGAAGTTTCGCGGGGTGGCG ACACGTCGAGGAGAAATGCC
Downstream 100 bases:
>100_bases CATGAAAAATCTGATGACGCGCCGTCATCTTTTCGGCCTGATTGCGGTCGGATCGGGGATGGCGCTTGCGGCATGCAATT CTGCCTCGGGCCCGGCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 147; Mature: 147
Protein sequence:
>147_residues MKPAYRSLALQTIVSGVIMYLVMFVMIDRLSSFYNNLNMLYMTLMMVSPMVVLMIVAMPGMFPSKRLNTFLLLGSAVAFF GSFGLIRTQTTIGDTAFLRSMIPHHSGAILMCEQASLKDAEIRELCRGIIAGQAAEIEQMKSILARK
Sequences:
>Translated_147_residues MKPAYRSLALQTIVSGVIMYLVMFVMIDRLSSFYNNLNMLYMTLMMVSPMVVLMIVAMPGMFPSKRLNTFLLLGSAVAFF GSFGLIRTQTTIGDTAFLRSMIPHHSGAILMCEQASLKDAEIRELCRGIIAGQAAEIEQMKSILARK >Mature_147_residues MKPAYRSLALQTIVSGVIMYLVMFVMIDRLSSFYNNLNMLYMTLMMVSPMVVLMIVAMPGMFPSKRLNTFLLLGSAVAFF GSFGLIRTQTTIGDTAFLRSMIPHHSGAILMCEQASLKDAEIRELCRGIIAGQAAEIEQMKSILARK
Specific function: Unknown
COG id: COG3544
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16351; Mature: 16351
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 10.2 %Met (Translated Protein) 11.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 10.2 %Met (Mature Protein) 11.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPAYRSLALQTIVSGVIMYLVMFVMIDRLSSFYNNLNMLYMTLMMVSPMVVLMIVAMPG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC MFPSKRLNTFLLLGSAVAFFGSFGLIRTQTTIGDTAFLRSMIPHHSGAILMCEQASLKDA CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHH EIRELCRGIIAGQAAEIEQMKSILARK HHHHHHHHHHCCCHHHHHHHHHHHCCC >Mature Secondary Structure MKPAYRSLALQTIVSGVIMYLVMFVMIDRLSSFYNNLNMLYMTLMMVSPMVVLMIVAMPG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC MFPSKRLNTFLLLGSAVAFFGSFGLIRTQTTIGDTAFLRSMIPHHSGAILMCEQASLKDA CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHH EIRELCRGIIAGQAAEIEQMKSILARK HHHHHHHHHHCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA