| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487853
Identifier: 103487853
GI number: 103487853
Start: 2495138
End: 2496097
Strand: Reverse
Name: 103487853
Synonym: Sala_2372
Alternate gene names: NA
Gene position: 2496097-2495138 (Counterclockwise)
Preceding gene: 103487854
Following gene: 103487850
Centisome position: 74.62
GC content: 65.94
Gene sequence:
>960_bases ATGCAACAGATGAATCCGCCGCTTGTGCGGCCGGCAACGCGCCCGGTGCGTTCATGGGTGTTCGACAGCGCGGGATGGGA CGGTTTCCCCCTGCGCCGCGACGACATCGTCATTTCGACCTATCCCAAATGCGGGACGACGTGGATGCAGCGTATCGTCG GCATGTTGGTCTTTGGCAGCGCCGCACCCTTTCCGGTGCAGGACAGTTCGCCCTGGCCCGATTTCCGCCTGGTGCCGCTC GAGGCCACGACCGCGCTCGCCGAGGGTCAGGCGCACCGCCGCTTCCTGAAATCGCACCTGCCGTTCGACGCCCTGCCGGT GCATGAGGGGATCAAATATATCCATGTCGCGCGCGACGGCCGCGATGCCGCCATGTCCTTTTTCAATCACAAGGCGAATT ACACCGCGGAGGCGGTCGAACTGATCGGCGGCATCGTCGAGAGCGATCCCAAATTCGGCCATGTGCCGCGCCTCGTGCCC ACCGATCCGGCCGCGCATTTCCACGACTGGCTCGTCGGCGACGAGGACGCGCTGGGCGATCCCGGCGCGTCCTTCTTCAC GATGGAAAAAAGTTTCTGGGAGGCGCGGCACGACCCCAACCTGCTGCTCGTCCACTATAACGACCTCAAGGCCGATCGCA TGGGCGAGATGCGTCGTATCGCCGATTTTCTGGACATTGCGATCCCCGATGACCTCTGGCCCGATCTGGTCGCGGCGGCG GGGTTCGACGCGATGAAGGCGGCCGCCGACGCGCTGCTTCCCGCTGCGGGCGATATCTGGGAAGGCGGCGGGCGAACCTT CCTGCACAAGGGAACCAACGGGCGCTGGCGCGATCTGTACGCCGCTCCGGACCTTGCGCTCTATGACGCGCGCGTCGCCG CCGAATTCACCCCCGGACTCGCCGCCTGGGTCGAAAAGGGCCGACTGGCCACCTCCGATCCCCGCGCCGCCCCCGACTGA
Upstream 100 bases:
>100_bases TCGCGCGCCACTGGCGCCCGGCGATCGAGCGTGCCGCGACCGCCGAAATCGCGGGATAGCGGCGGCAAATTATGTTATTC CCTGTGCGGGAGGGGCTATC
Downstream 100 bases:
>100_bases CGCATCGGCAGCGGTGCGGCGCCTGCGCTATTCGATTGCGCGACCCGGCGACCAGGGCAGGGGTTCGAGCGTGCGGTCCG ATATCGCATCGACGAAGCGG
Product: sulfotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MQQMNPPLVRPATRPVRSWVFDSAGWDGFPLRRDDIVISTYPKCGTTWMQRIVGMLVFGSAAPFPVQDSSPWPDFRLVPL EATTALAEGQAHRRFLKSHLPFDALPVHEGIKYIHVARDGRDAAMSFFNHKANYTAEAVELIGGIVESDPKFGHVPRLVP TDPAAHFHDWLVGDEDALGDPGASFFTMEKSFWEARHDPNLLLVHYNDLKADRMGEMRRIADFLDIAIPDDLWPDLVAAA GFDAMKAAADALLPAAGDIWEGGGRTFLHKGTNGRWRDLYAAPDLALYDARVAAEFTPGLAAWVEKGRLATSDPRAAPD
Sequences:
>Translated_319_residues MQQMNPPLVRPATRPVRSWVFDSAGWDGFPLRRDDIVISTYPKCGTTWMQRIVGMLVFGSAAPFPVQDSSPWPDFRLVPL EATTALAEGQAHRRFLKSHLPFDALPVHEGIKYIHVARDGRDAAMSFFNHKANYTAEAVELIGGIVESDPKFGHVPRLVP TDPAAHFHDWLVGDEDALGDPGASFFTMEKSFWEARHDPNLLLVHYNDLKADRMGEMRRIADFLDIAIPDDLWPDLVAAA GFDAMKAAADALLPAAGDIWEGGGRTFLHKGTNGRWRDLYAAPDLALYDARVAAEFTPGLAAWVEKGRLATSDPRAAPD >Mature_319_residues MQQMNPPLVRPATRPVRSWVFDSAGWDGFPLRRDDIVISTYPKCGTTWMQRIVGMLVFGSAAPFPVQDSSPWPDFRLVPL EATTALAEGQAHRRFLKSHLPFDALPVHEGIKYIHVARDGRDAAMSFFNHKANYTAEAVELIGGIVESDPKFGHVPRLVP TDPAAHFHDWLVGDEDALGDPGASFFTMEKSFWEARHDPNLLLVHYNDLKADRMGEMRRIADFLDIAIPDDLWPDLVAAA GFDAMKAAADALLPAAGDIWEGGGRTFLHKGTNGRWRDLYAAPDLALYDARVAAEFTPGLAAWVEKGRLATSDPRAAPD
Specific function: Involved in the synthesis of cell wall sulfolipids [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sulfotransferase 1 family [H]
Homologues:
Organism=Homo sapiens, GI29550893, Length=301, Percent_Identity=23.2558139534884, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4507303, Length=301, Percent_Identity=23.2558139534884, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI29540539, Length=302, Percent_Identity=22.8476821192053, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI29540537, Length=302, Percent_Identity=22.8476821192053, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI29540535, Length=302, Percent_Identity=22.8476821192053, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI29540531, Length=302, Percent_Identity=22.8476821192053, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4885617, Length=264, Percent_Identity=25.3787878787879, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI221468277, Length=297, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000863 [H]
Pfam domain/function: PF00685 Sulfotransfer_1 [H]
EC number: NA
Molecular weight: Translated: 35268; Mature: 35268
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQMNPPLVRPATRPVRSWVFDSAGWDGFPLRRDDIVISTYPKCGTTWMQRIVGMLVFGS CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC AAPFPVQDSSPWPDFRLVPLEATTALAEGQAHRRFLKSHLPFDALPVHEGIKYIHVARDG CCCCCCCCCCCCCCEEEEECHHHHHHHCCHHHHHHHHHCCCCCCEEHHHCCEEEEEECCC RDAAMSFFNHKANYTAEAVELIGGIVESDPKFGHVPRLVPTDPAAHFHDWLVGDEDALGD HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC PGASFFTMEKSFWEARHDPNLLLVHYNDLKADRMGEMRRIADFLDIAIPDDLWPDLVAAA CCCCEEEEHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHC GFDAMKAAADALLPAAGDIWEGGGRTFLHKGTNGRWRDLYAAPDLALYDARVAAEFTPGL CHHHHHHHHHHHCCCCCCEECCCCEEEEECCCCCCEEEEECCCCCEEHHHHHHHHCCCHH AAWVEKGRLATSDPRAAPD HHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MQQMNPPLVRPATRPVRSWVFDSAGWDGFPLRRDDIVISTYPKCGTTWMQRIVGMLVFGS CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC AAPFPVQDSSPWPDFRLVPLEATTALAEGQAHRRFLKSHLPFDALPVHEGIKYIHVARDG CCCCCCCCCCCCCCEEEEECHHHHHHHCCHHHHHHHHHCCCCCCEEHHHCCEEEEEECCC RDAAMSFFNHKANYTAEAVELIGGIVESDPKFGHVPRLVPTDPAAHFHDWLVGDEDALGD HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC PGASFFTMEKSFWEARHDPNLLLVHYNDLKADRMGEMRRIADFLDIAIPDDLWPDLVAAA CCCCEEEEHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHC GFDAMKAAADALLPAAGDIWEGGGRTFLHKGTNGRWRDLYAAPDLALYDARVAAEFTPGL CHHHHHHHHHHHCCCCCCEECCCCEEEEECCCCCCEEEEECCCCCEEHHHHHHHHCCCHH AAWVEKGRLATSDPRAAPD HHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA