Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487822

Identifier: 103487822

GI number: 103487822

Start: 2469115

End: 2469690

Strand: Reverse

Name: 103487822

Synonym: Sala_2341

Alternate gene names: NA

Gene position: 2469690-2469115 (Counterclockwise)

Preceding gene: 103487823

Following gene: 103487821

Centisome position: 73.83

GC content: 70.14

Gene sequence:

>576_bases
ATGAACCGGACCGGGACGCGCAGGAGCCTGATGCTCGCGGGCGCGGGGTTTGTGCTGACCAGCCTCGCGATCCTGTCGGT
CGGCGGTGGCGACCGTGCGGCGGCGCAGGCGCTGGCCAATCACAACAGCAATGCGCCGGTCGACTTCGCCGCTGGCAGCA
TCGAGGTGCAGGACCGCGCCGACCGGGTGGTGCTCGCGGGCAATGTCCGCGTCACCCAGGCGGGGCTGGTCGTTACCGCG
CCCCGAATGACGGTCGCCTATACGCGTGCGGGCGGCACCGACGTCAACCGGCTTGACGCGACCGGCGGGGTGACGGTGGT
GAAGGGCGATGAATCGGCGCGTGGCAATGTCGCCATCTATGACCTCGACCGGCGGCTGATCACCATGGTGGGCAATGTCG
AGCTGCGCCAGCGCGGCAACAATCTGCGCGGCGGACGGCTGGTTATCGACCTGAACAGCGGTCGCGCGACGGTCGACGGC
CGCGGCGCGGCGCGGGGCCCCGACGGCAATCCGGTCGCGGGCGGCACGGGCGGGCGCGTCACCGGTACCTTTACCGTACC
GGAAAGAAAGCAGTAA

Upstream 100 bases:

>100_bases
TCGGGCAATTTTCGGCCAACGCGCTGTCCGCCGACCTCGACAAGCGGATTGTCCGGCTGGAGGGCAATGCCCGGCTGCGG
ATCAACCAGGGAGCGATCAA

Downstream 100 bases:

>100_bases
CCAGCGCTTTTCACGGCTCGGCAACCCTGCGCCATCACCATGGCCGACGGGTCCAGAACCATTGCGGTGCCGGGGGGCGA
CACCGCGTCCTGAAAGGCGA

Product: OstA-like protein

Products: NA

Alternate protein names: OstA Family Protein

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MNRTGTRRSLMLAGAGFVLTSLAILSVGGGDRAAAQALANHNSNAPVDFAAGSIEVQDRADRVVLAGNVRVTQAGLVVTA
PRMTVAYTRAGGTDVNRLDATGGVTVVKGDESARGNVAIYDLDRRLITMVGNVELRQRGNNLRGGRLVIDLNSGRATVDG
RGAARGPDGNPVAGGTGGRVTGTFTVPERKQ

Sequences:

>Translated_191_residues
MNRTGTRRSLMLAGAGFVLTSLAILSVGGGDRAAAQALANHNSNAPVDFAAGSIEVQDRADRVVLAGNVRVTQAGLVVTA
PRMTVAYTRAGGTDVNRLDATGGVTVVKGDESARGNVAIYDLDRRLITMVGNVELRQRGNNLRGGRLVIDLNSGRATVDG
RGAARGPDGNPVAGGTGGRVTGTFTVPERKQ
>Mature_191_residues
MNRTGTRRSLMLAGAGFVLTSLAILSVGGGDRAAAQALANHNSNAPVDFAAGSIEVQDRADRVVLAGNVRVTQAGLVVTA
PRMTVAYTRAGGTDVNRLDATGGVTVVKGDESARGNVAIYDLDRRLITMVGNVELRQRGNNLRGGRLVIDLNSGRATVDG
RGAARGPDGNPVAGGTGGRVTGTFTVPERKQ

Specific function: Unknown

COG id: COG1934

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19664; Mature: 19664

Theoretical pI: Translated: 11.74; Mature: 11.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTGTRRSLMLAGAGFVLTSLAILSVGGGDRAAAQALANHNSNAPVDFAAGSIEVQDRA
CCCCCCCEEEEEECCHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCEEEECCEEEECCCC
DRVVLAGNVRVTQAGLVVTAPRMTVAYTRAGGTDVNRLDATGGVTVVKGDESARGNVAIY
CEEEEECCEEEEECCEEEECCCEEEEEEECCCCCCCEEECCCCEEEEECCCCCCCCEEEE
DLDRRLITMVGNVELRQRGNNLRGGRLVIDLNSGRATVDGRGAARGPDGNPVAGGTGGRV
ECCCEEEEEECCEEEEECCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEE
TGTFTVPERKQ
EEEEECCCCCC
>Mature Secondary Structure
MNRTGTRRSLMLAGAGFVLTSLAILSVGGGDRAAAQALANHNSNAPVDFAAGSIEVQDRA
CCCCCCCEEEEEECCHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCEEEECCEEEECCCC
DRVVLAGNVRVTQAGLVVTAPRMTVAYTRAGGTDVNRLDATGGVTVVKGDESARGNVAIY
CEEEEECCEEEEECCEEEECCCEEEEEEECCCCCCCEEECCCCEEEEECCCCCCCCEEEE
DLDRRLITMVGNVELRQRGNNLRGGRLVIDLNSGRATVDGRGAARGPDGNPVAGGTGGRV
ECCCEEEEEECCEEEEECCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEE
TGTFTVPERKQ
EEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA