| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487804
Identifier: 103487804
GI number: 103487804
Start: 2451375
End: 2451941
Strand: Direct
Name: 103487804
Synonym: Sala_2323
Alternate gene names: NA
Gene position: 2451375-2451941 (Clockwise)
Preceding gene: 103487803
Following gene: 103487805
Centisome position: 73.28
GC content: 63.67
Gene sequence:
>567_bases ATGGCCGAATTCACCGACACGCTGACCGACAAACATATCGCCTTCATCGAAAAGCAGCCGGTCTTCTTCACCGCGACCGC CGCGCGCGACGGCCGCATCAACCTGTCGCCCAAGGGTTATGCCGACAGTTTCAGGATATTGTCCGAACGGCAGGTCGCCT ATCTCGACCTCGGCGGGTCGGGCAACGAAACCCACGCACATCTGGCCGCGGACGGCCGAATCACCATCATGTTCTGCGCC TTCGACCGCAGTGCGCTGATCCTGCGCATTTACGGCCACGGCCACCCCGTGCTGCCGCAGGATGCCGAGTGGGACGCACT CGCGGCGCATTTCACCCTGCTCCCCGGTACGCGCCAGATTTTCGTGATCGACGTCGACAGCGTGCAGACGAGCTGCGGCT GGGGCGTACCGATGATGGAATTGCAAGGCGAGCGCGAGACGCTGCAGAAATATCACCGGCAGGCCGATCCCGCGCTGTGG GTCGAGAAGTTTCAGGAGCGCACGAAAAGCATCGACGGCCTGCCGACGCGCCCGACCGACCGCTTCATCGCCGGGGAAAC CGCCTGA
Upstream 100 bases:
>100_bases CGCAACGAGGCGCTCGGCCGCGCGACCCGGCCGGAGGAAGAGGCAGCGATAGAAGAGGGCAGGAATTGGTGATAGGCAGG CCGCGACTGGGAGACGCGCC
Downstream 100 bases:
>100_bases TGCCGCTGGTCGAGCTGGTGCGCCTGCCCAACGGCGCCGAGGCCGAACTGCTGCGCGGCCGCCTCGAAAGCGCGGGCGTC CACGCCGTGTGCTTCGACGC
Product: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Products: NA
Alternate protein names: Pyridoxamine 5-Phosphate Oxidase Family Protein; Pyridoxamine 5-Phosphate Oxidase-Like Protein; Signal Transduction Histidine Kinase; Pyridoxamine-Phosphate Oxidase; Pyridoxamine 5-Phosphate Oxidase Family
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MAEFTDTLTDKHIAFIEKQPVFFTATAARDGRINLSPKGYADSFRILSERQVAYLDLGGSGNETHAHLAADGRITIMFCA FDRSALILRIYGHGHPVLPQDAEWDALAAHFTLLPGTRQIFVIDVDSVQTSCGWGVPMMELQGERETLQKYHRQADPALW VEKFQERTKSIDGLPTRPTDRFIAGETA
Sequences:
>Translated_188_residues MAEFTDTLTDKHIAFIEKQPVFFTATAARDGRINLSPKGYADSFRILSERQVAYLDLGGSGNETHAHLAADGRITIMFCA FDRSALILRIYGHGHPVLPQDAEWDALAAHFTLLPGTRQIFVIDVDSVQTSCGWGVPMMELQGERETLQKYHRQADPALW VEKFQERTKSIDGLPTRPTDRFIAGETA >Mature_187_residues AEFTDTLTDKHIAFIEKQPVFFTATAARDGRINLSPKGYADSFRILSERQVAYLDLGGSGNETHAHLAADGRITIMFCAF DRSALILRIYGHGHPVLPQDAEWDALAAHFTLLPGTRQIFVIDVDSVQTSCGWGVPMMELQGERETLQKYHRQADPALWV EKFQERTKSIDGLPTRPTDRFIAGETA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21021; Mature: 20890
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEFTDTLTDKHIAFIEKQPVFFTATAARDGRINLSPKGYADSFRILSERQVAYLDLGGS CCCCCCHHCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCCHHHHHCCCEEEEEEECCC GNETHAHLAADGRITIMFCAFDRSALILRIYGHGHPVLPQDAEWDALAAHFTLLPGTRQI CCCCEEEEEECCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEE FVIDVDSVQTSCGWGVPMMELQGERETLQKYHRQADPALWVEKFQERTKSIDGLPTRPTD EEEEECCCCCCCCCCCCHHEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC RFIAGETA CEECCCCC >Mature Secondary Structure AEFTDTLTDKHIAFIEKQPVFFTATAARDGRINLSPKGYADSFRILSERQVAYLDLGGS CCCCCHHCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCCHHHHHCCCEEEEEEECCC GNETHAHLAADGRITIMFCAFDRSALILRIYGHGHPVLPQDAEWDALAAHFTLLPGTRQI CCCCEEEEEECCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEE FVIDVDSVQTSCGWGVPMMELQGERETLQKYHRQADPALWVEKFQERTKSIDGLPTRPTD EEEEECCCCCCCCCCCCHHEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCC RFIAGETA CEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA