Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487785

Identifier: 103487785

GI number: 103487785

Start: 2431694

End: 2432623

Strand: Reverse

Name: 103487785

Synonym: Sala_2304

Alternate gene names: NA

Gene position: 2432623-2431694 (Counterclockwise)

Preceding gene: 103487786

Following gene: 103487784

Centisome position: 72.72

GC content: 70.65

Gene sequence:

>930_bases
ATGCTGCGCACCGGCGGCATTGTCGGCGCGCTGGCGCTTGCCGTTCCCGCGACCCCCGCCGCCGCGCCGCCGCCGTTCGA
AATACTGCGTTGGACGGCTCCCGGAGCCGAGCTTGCCGCCCTGTCGACGCAGCCTGCGGCTTGCCTGGGCAGCGCAGCGG
TGGAGGTGCAGGCCGGAGAGGCGCTGTTCAACAGCCCGCGACTGCTCGGCGGCCAGGCCGCCAAGGCCGGGCTGAGCTGC
GCCGGTTGTCATGTCAATGGCCGTGACAACGCGCATTTCCTGATGGCGGGCGTGTCGGACCGGGCGGGGACGGCCGATGT
TACCCACAGTTTCTTTGGAGCCGCGCGTGGCAATGGCCGCTTTGACCCCGTCACCATCCCCGATCTGGCGCGGCCGGGCA
AAGTGTCGCGCGATCCGGCGGGCGGCGCGCTGGAATCCTTTGTCCGCGACTTGATTGTCGACGAGTTCGCCGGACGCGAG
CCGACGCCGGCGATGCTCGCGGCACTTGCCGCCTATGTGCGCGCGATCGCGCCCTGTCCCGATGGCGACCCGCCCGGTCG
ACGCGCCCTCGACGACCAGTTGCGGCTGATCGACTTTGCGCTGCGCGGCGCGACCGGCATGGCGCGACGCGCCGATCCCG
TCGCGGCGCGCGCGCTGCTGGCCGCTGCGCGCCACCAGCTCGGGCTGATCGCCGAGCGCTATCCGGCCCCGCCGTTTGGC
GCCGAGCGACGCGAGCTTCTGGCGGCCTCGCGCGTGCTGGCCGACATGCACGACAAGGCGGCAAACAGCGATGGCTTCAT
CGCTGCGCTGTCCGCGTGGCGGGCGGCGTTCGAGAAGGACCTCGTGCAGCGGCTGCGCCGACGCGAAGCACGATCATTAT
ACAATCCGGCCAACCTCGCTTTTGTTGCGCCGCAGCAGGATAATCGCTAA

Upstream 100 bases:

>100_bases
AGGCGCATCTGGCGCGGCTCGACGCGATCTGCGGTTTTGGTTGCAACGAGGCCGATGAACTGCGCCGCTGGATCGAGGAG
AAAGTGCGATCGGCAAGCTG

Downstream 100 bases:

>100_bases
GGGCGCGCCCAGCCACGGCGCTGCCGCTCATCTCCACAAAAGGCCTTTTTTTCCATGTCGCTCCGCAATATCGCCATTAT
AGCGCACGTCGATCACGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MLRTGGIVGALALAVPATPAAAPPPFEILRWTAPGAELAALSTQPAACLGSAAVEVQAGEALFNSPRLLGGQAAKAGLSC
AGCHVNGRDNAHFLMAGVSDRAGTADVTHSFFGAARGNGRFDPVTIPDLARPGKVSRDPAGGALESFVRDLIVDEFAGRE
PTPAMLAALAAYVRAIAPCPDGDPPGRRALDDQLRLIDFALRGATGMARRADPVAARALLAAARHQLGLIAERYPAPPFG
AERRELLAASRVLADMHDKAANSDGFIAALSAWRAAFEKDLVQRLRRREARSLYNPANLAFVAPQQDNR

Sequences:

>Translated_309_residues
MLRTGGIVGALALAVPATPAAAPPPFEILRWTAPGAELAALSTQPAACLGSAAVEVQAGEALFNSPRLLGGQAAKAGLSC
AGCHVNGRDNAHFLMAGVSDRAGTADVTHSFFGAARGNGRFDPVTIPDLARPGKVSRDPAGGALESFVRDLIVDEFAGRE
PTPAMLAALAAYVRAIAPCPDGDPPGRRALDDQLRLIDFALRGATGMARRADPVAARALLAAARHQLGLIAERYPAPPFG
AERRELLAASRVLADMHDKAANSDGFIAALSAWRAAFEKDLVQRLRRREARSLYNPANLAFVAPQQDNR
>Mature_309_residues
MLRTGGIVGALALAVPATPAAAPPPFEILRWTAPGAELAALSTQPAACLGSAAVEVQAGEALFNSPRLLGGQAAKAGLSC
AGCHVNGRDNAHFLMAGVSDRAGTADVTHSFFGAARGNGRFDPVTIPDLARPGKVSRDPAGGALESFVRDLIVDEFAGRE
PTPAMLAALAAYVRAIAPCPDGDPPGRRALDDQLRLIDFALRGATGMARRADPVAARALLAAARHQLGLIAERYPAPPFG
AERRELLAASRVLADMHDKAANSDGFIAALSAWRAAFEKDLVQRLRRREARSLYNPANLAFVAPQQDNR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32319; Mature: 32319

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTGGIVGALALAVPATPAAAPPPFEILRWTAPGAELAALSTQPAACLGSAAVEVQAGE
CCCCCHHHHHHHHHHCCCCCCCCCCHHHEEECCCCCCEECCCCCCHHHHCCHHEEEECCH
ALFNSPRLLGGQAAKAGLSCAGCHVNGRDNAHFLMAGVSDRAGTADVTHSFFGAARGNGR
HHHCCCCCCCCHHHHCCCEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCC
FDPVTIPDLARPGKVSRDPAGGALESFVRDLIVDEFAGREPTPAMLAALAAYVRAIAPCP
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
DGDPPGRRALDDQLRLIDFALRGATGMARRADPVAARALLAAARHQLGLIAERYPAPPFG
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AERRELLAASRVLADMHDKAANSDGFIAALSAWRAAFEKDLVQRLRRREARSLYNPANLA
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FVAPQQDNR
EECCCCCCC
>Mature Secondary Structure
MLRTGGIVGALALAVPATPAAAPPPFEILRWTAPGAELAALSTQPAACLGSAAVEVQAGE
CCCCCHHHHHHHHHHCCCCCCCCCCHHHEEECCCCCCEECCCCCCHHHHCCHHEEEECCH
ALFNSPRLLGGQAAKAGLSCAGCHVNGRDNAHFLMAGVSDRAGTADVTHSFFGAARGNGR
HHHCCCCCCCCHHHHCCCEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCC
FDPVTIPDLARPGKVSRDPAGGALESFVRDLIVDEFAGREPTPAMLAALAAYVRAIAPCP
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
DGDPPGRRALDDQLRLIDFALRGATGMARRADPVAARALLAAARHQLGLIAERYPAPPFG
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AERRELLAASRVLADMHDKAANSDGFIAALSAWRAAFEKDLVQRLRRREARSLYNPANLA
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
FVAPQQDNR
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA