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The map label for this gene is atpD

Identifier: 103487769

GI number: 103487769

Start: 2412592

End: 2414133

Strand: Direct

Name: atpD

Synonym: Sala_2288

Alternate gene names: 103487769

Gene position: 2412592-2414133 (Clockwise)

Preceding gene: 103487768

Following gene: 103487770

Centisome position: 72.12

GC content: 65.89

Gene sequence:

>1542_bases
ATGGCAACCGCACCCGCCACCGAAAAGAAGGCTCCCGCCAAAAAGGCCGCCGCGCCCAAGGCTGCTGCGCCGAAGAAGGC
CGCCGCTCCCAAGGCCGCTGCCCCCGTCGGCGCCGCGACCGGCCGCATCGCGCAGGTCATCGGCGCCGTCGTCGACGTCC
AGTTCACCGGCGAACTGCCCGCGATCCTGAACGCGCTCGAAACCGACAACAATGGCAACCGCCTCGTCCTCGAAGTCGCG
CAGCACCTCGGCGAGAACACCGTCCGCACCATCGCGATGGACGCGACCGACGGCCTGACCCGCGGCCAGCCGGTGCGCGA
CACCGGCGCGCAGATTTCGGTCCCCGTCGGGCCGCAGACATTGGGCCGCATCCTCAACGTCATCGGCGAGCCGATCGACG
AACGCGGTCCGGTGAACAGCGACATGACCGCGCCGATCCACGCCAAGGCTCCTGAGTTTGTCGACCAGTCGACCGAAGCG
TCGATCCTCGTCACCGGCATCAAGGTCATCGACCTGATCGCGCCCTATGCCAAGGGTGGCAAGATCGGCCTGTTCGGCGG
CGCGGGCGTCGGCAAGACCGTGCTCATCCAGGAACTGATCAACAACATCGCCAAGGGTCACGGCGGCGTCAGCGTGTTCG
CGGGCGTCGGTGAACGCACCCGCGAAGGCAACGACCTTTATCACGAGTTTCTCGATGCCGGCGTCATCGCCAAGGACGCC
GACGGCAACCCGACCCCCGACGGGTCGAAGGTCGCGCTGGTGTTCGGCCAGATGAACGAACCGCCGGGCGCGCGTGCCCG
CGTCGCGCTCTCGGGCCTCACCATGGCCGAATATTTCCGCGACCAGGAAGGGCAGGACGTGCTCTTCTTCGTCGACAACA
TTTTCCGCTTCACCCAGGCGGGTTCGGAAGTGTCGGCGCTGCTCGGCCGTATTCCCTCGGCGGTGGGTTATCAGCCGACG
CTGTCGACCGACATGGGCGCGCTGCAGGAACGCATCACCTCGACCACCAAGGGCTCGATCACCTCGGTGCAGGCGATTTA
CGTCCCCGCGGACGACCTGACCGACCCGGCGCCTGCAACCTCCTTCGCTCACCTGGACGCGACGACGACGCTCAGCCGCG
CGATTTCGGAACTCGGCATCTATCCCGCGGTCGATCCGCTCGATTCGACCAGCCGCGTGCTCACCCCGGCGATCGTCGGT
CAGGAACATTATGAAACCGCGCGCCGCGTTCAGGAAACGCTGCAGAAATACAAGTCGCTGCAGGACATCATCGCGATCCT
CGGCATGGACGAGCTGTCGGAAGAGGACAAGCTGGTCGTCGCCCGCGCGCGCAAGATCCAGCGCTTCCTCAGCCAGCCCT
TCCACGTCGCCGAAGTCTTCACCGGCATTCCCGGCAAGTTCGTGCCGATCGAGGAAACGGTGAAGTCGTTCAAGGCGGTC
GTCGACGGCGAATATGACCATCTGCCCGAAGCGGCCTTCTACATGGTCGGCGGCATCGACGAAGCGGTCGCCAAGGCCGC
GAAGCTCGCCGAAGAGGCGTAA

Upstream 100 bases:

>100_bases
CATCTACAACCGCACGCGCCAGGCGGCGATCACCACCGAACTCATCGAAATCATTGCTGGCGCGGAAGCGCTCTAAGCTA
TCCAAGCAAGGGAAAAGACC

Downstream 100 bases:

>100_bases
TAATGGCTCTCTCCCCTTCAGGGGAGAGGGCTTTAGGATGAAGAAAATGGCCCTGAAGTTCGAACTCGTCACCCCCGCCC
GCCTCGAGCGGTCCGCCGAC

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 513; Mature: 512

Protein sequence:

>513_residues
MATAPATEKKAPAKKAAAPKAAAPKKAAAPKAAAPVGAATGRIAQVIGAVVDVQFTGELPAILNALETDNNGNRLVLEVA
QHLGENTVRTIAMDATDGLTRGQPVRDTGAQISVPVGPQTLGRILNVIGEPIDERGPVNSDMTAPIHAKAPEFVDQSTEA
SILVTGIKVIDLIAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGVSVFAGVGERTREGNDLYHEFLDAGVIAKDA
DGNPTPDGSKVALVFGQMNEPPGARARVALSGLTMAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPT
LSTDMGALQERITSTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTTLSRAISELGIYPAVDPLDSTSRVLTPAIVG
QEHYETARRVQETLQKYKSLQDIIAILGMDELSEEDKLVVARARKIQRFLSQPFHVAEVFTGIPGKFVPIEETVKSFKAV
VDGEYDHLPEAAFYMVGGIDEAVAKAAKLAEEA

Sequences:

>Translated_513_residues
MATAPATEKKAPAKKAAAPKAAAPKKAAAPKAAAPVGAATGRIAQVIGAVVDVQFTGELPAILNALETDNNGNRLVLEVA
QHLGENTVRTIAMDATDGLTRGQPVRDTGAQISVPVGPQTLGRILNVIGEPIDERGPVNSDMTAPIHAKAPEFVDQSTEA
SILVTGIKVIDLIAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGVSVFAGVGERTREGNDLYHEFLDAGVIAKDA
DGNPTPDGSKVALVFGQMNEPPGARARVALSGLTMAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPT
LSTDMGALQERITSTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTTLSRAISELGIYPAVDPLDSTSRVLTPAIVG
QEHYETARRVQETLQKYKSLQDIIAILGMDELSEEDKLVVARARKIQRFLSQPFHVAEVFTGIPGKFVPIEETVKSFKAV
VDGEYDHLPEAAFYMVGGIDEAVAKAAKLAEEA
>Mature_512_residues
ATAPATEKKAPAKKAAAPKAAAPKKAAAPKAAAPVGAATGRIAQVIGAVVDVQFTGELPAILNALETDNNGNRLVLEVAQ
HLGENTVRTIAMDATDGLTRGQPVRDTGAQISVPVGPQTLGRILNVIGEPIDERGPVNSDMTAPIHAKAPEFVDQSTEAS
ILVTGIKVIDLIAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGVSVFAGVGERTREGNDLYHEFLDAGVIAKDAD
GNPTPDGSKVALVFGQMNEPPGARARVALSGLTMAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTL
STDMGALQERITSTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTTLSRAISELGIYPAVDPLDSTSRVLTPAIVGQ
EHYETARRVQETLQKYKSLQDIIAILGMDELSEEDKLVVARARKIQRFLSQPFHVAEVFTGIPGKFVPIEETVKSFKAVV
DGEYDHLPEAAFYMVGGIDEAVAKAAKLAEEA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=499, Percent_Identity=77.1543086172345, Blast_Score=763, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=328, Percent_Identity=27.1341463414634, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI19913428, Length=372, Percent_Identity=26.6129032258064, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI19913426, Length=449, Percent_Identity=25.6124721603563, Blast_Score=100, Evalue=6e-21,
Organism=Homo sapiens, GI50345984, Length=451, Percent_Identity=25.0554323725055, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI4757810, Length=451, Percent_Identity=25.0554323725055, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI1790170, Length=472, Percent_Identity=67.7966101694915, Blast_Score=639, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=323, Percent_Identity=30.9597523219814, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1790172, Length=338, Percent_Identity=26.9230769230769, Blast_Score=105, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI25144756, Length=481, Percent_Identity=74.8440748440749, Blast_Score=734, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=340, Percent_Identity=27.3529411764706, Blast_Score=120, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=357, Percent_Identity=25.4901960784314, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17570191, Length=357, Percent_Identity=25.4901960784314, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71988080, Length=435, Percent_Identity=25.2873563218391, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988063, Length=435, Percent_Identity=25.2873563218391, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=387, Percent_Identity=24.8062015503876, Blast_Score=73, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6322581, Length=492, Percent_Identity=73.9837398373984, Blast_Score=727, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=375, Percent_Identity=25.3333333333333, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6319370, Length=424, Percent_Identity=24.2924528301887, Blast_Score=90, Evalue=9e-19,
Organism=Saccharomyces cerevisiae, GI6320016, Length=286, Percent_Identity=24.1258741258741, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24638766, Length=475, Percent_Identity=78.3157894736842, Blast_Score=753, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=505, Percent_Identity=67.7227722772277, Blast_Score=679, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=72.5274725274725, Blast_Score=130, Evalue=3e-30,
Organism=Drosophila melanogaster, GI24583988, Length=336, Percent_Identity=26.1904761904762, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24583986, Length=336, Percent_Identity=26.1904761904762, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24583984, Length=336, Percent_Identity=26.1904761904762, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI20129479, Length=314, Percent_Identity=27.0700636942675, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583992, Length=306, Percent_Identity=27.4509803921569, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI281361666, Length=368, Percent_Identity=25, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24646341, Length=368, Percent_Identity=25, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI17136796, Length=368, Percent_Identity=25, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24658560, Length=403, Percent_Identity=24.5657568238213, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_SPHAL (Q1GQS5)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_617330.1
- ProteinModelPortal:   Q1GQS5
- SMR:   Q1GQS5
- GeneID:   4080745
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_2288
- NMPDR:   fig|317655.9.peg.2211
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- BioCyc:   SALA317655:SALA_2288-MONOMER
- BRENDA:   3.6.3.14
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 53979; Mature: 53848

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAPATEKKAPAKKAAAPKAAAPKKAAAPKAAAPVGAATGRIAQVIGAVVDVQFTGELP
CCCCCCCCCCCCHHHHCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCHH
AILNALETDNNGNRLVLEVAQHLGENTVRTIAMDATDGLTRGQPVRDTGAQISVPVGPQT
HHHHHHHCCCCCCEEHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCHHH
LGRILNVIGEPIDERGPVNSDMTAPIHAKAPEFVDQSTEASILVTGIKVIDLIAPYAKGG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEHHHHHHHHHHHCCCCC
KIGLFGGAGVGKTVLIQELINNIAKGHGGVSVFAGVGERTREGNDLYHEFLDAGVIAKDA
CEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEECC
DGNPTPDGSKVALVFGQMNEPPGARARVALSGLTMAEYFRDQEGQDVLFFVDNIFRFTQA
CCCCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHC
GSEVSALLGRIPSAVGYQPTLSTDMGALQERITSTTKGSITSVQAIYVPADDLTDPAPAT
CHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCC
SFAHLDATTTLSRAISELGIYPAVDPLDSTSRVLTPAIVGQEHYETARRVQETLQKYKSL
CCHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
QDIIAILGMDELSEEDKLVVARARKIQRFLSQPFHVAEVFTGIPGKFVPIEETVKSFKAV
HHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEECHHHHHHHHHHH
VDGEYDHLPEAAFYMVGGIDEAVAKAAKLAEEA
HCCCHHCCCHHHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATAPATEKKAPAKKAAAPKAAAPKKAAAPKAAAPVGAATGRIAQVIGAVVDVQFTGELP
CCCCCCCCCCCHHHHCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCHH
AILNALETDNNGNRLVLEVAQHLGENTVRTIAMDATDGLTRGQPVRDTGAQISVPVGPQT
HHHHHHHCCCCCCEEHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCHHH
LGRILNVIGEPIDERGPVNSDMTAPIHAKAPEFVDQSTEASILVTGIKVIDLIAPYAKGG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEHHHHHHHHHHHCCCCC
KIGLFGGAGVGKTVLIQELINNIAKGHGGVSVFAGVGERTREGNDLYHEFLDAGVIAKDA
CEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEECC
DGNPTPDGSKVALVFGQMNEPPGARARVALSGLTMAEYFRDQEGQDVLFFVDNIFRFTQA
CCCCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHC
GSEVSALLGRIPSAVGYQPTLSTDMGALQERITSTTKGSITSVQAIYVPADDLTDPAPAT
CHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCC
SFAHLDATTTLSRAISELGIYPAVDPLDSTSRVLTPAIVGQEHYETARRVQETLQKYKSL
CCHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
QDIIAILGMDELSEEDKLVVARARKIQRFLSQPFHVAEVFTGIPGKFVPIEETVKSFKAV
HHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEECHHHHHHHHHHH
VDGEYDHLPEAAFYMVGGIDEAVAKAAKLAEEA
HCCCHHCCCHHHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA