Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is pcm [H]

Identifier: 103487742

GI number: 103487742

Start: 2379675

End: 2380337

Strand: Direct

Name: pcm [H]

Synonym: Sala_2261

Alternate gene names: 103487742

Gene position: 2379675-2380337 (Clockwise)

Preceding gene: 103487737

Following gene: 103487743

Centisome position: 71.14

GC content: 72.85

Gene sequence:

>663_bases
ATGGCGACGAGGTTTAGCGAATATACGGCGGCGGAAATGCGCGCCGCCATGATCGACAGCCAATTGAGGACGAACGACGT
CACCGACCCCGCGGTCGTCGCGGCGATGGGCGCGGTGCCGCGCGAGGCGCATGTCCCCGCCGCGCTTGCCGGCGTCGCCT
ATATGGACCGCGCGATCGCACTGGGCGAGGGACGGATGCTCAATCCTCCGCTCGTCACCGGCCGGATGCTCGTCGCCGCC
GCCATCCGTCCGGGGATGCGCGTCCTGCTCGTCGGCGGCGCGACCGGCTACACCGCCGCGCTGCTCGCGGCCCTGGGTGC
GCAAGTCCACGCGGTCGAGGAAGCGCCCGCGCTGCTCGCCATCGCCAGGTCGGCGACCGCCGACGCCAACATCCGCTGGA
TCGAGGGGCCGCTCGCCGCCGGCGCGCCCGATGCCGCCCCCTATGACCGGATCATCATCGACGGCGCGATCGAAGTGCTG
CCCGACGCGCTTGCCGCGCAGCTCGCCGAGGGCGGCCGCATCGTCGCCGCGCGGCGCGAAGGCGCGGTCTCGCGGCTCGT
CCAGGGGGTGAAGGCGGGCGGTGCGGTCGCGCTACGCAGCTTTGCCGACATGGACGTTGCGCCGCTGCCCGGTTTCGCCG
CCCCGACCGGCTTCCGTTTCTGA

Upstream 100 bases:

>100_bases
CGGCAGCGGACCGCCGGGCTGTATTACTATTGCAATACAGCATCGCTTCGGCTAGAGCGGTCGCAAAGGATCAAGGCTCC
AGGGAATCGGAACAAGGCTG

Downstream 100 bases:

>100_bases
GCTGTCCCTCCCCCTCCTTGTTTCAGGCTGACACCACGATGACCGATAGCGACAAGAAACCGTGCCCTCGTCGTGCCCGC
TGGCTTGCCGGCCTCGCCGC

Product: protein-L-isoaspartate(D-aspartate) O-methyltransferase

Products: NA

Alternate protein names: L-isoaspartyl protein carboxyl methyltransferase; Protein L-isoaspartyl methyltransferase; Protein-beta-aspartate methyltransferase; PIMT [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MATRFSEYTAAEMRAAMIDSQLRTNDVTDPAVVAAMGAVPREAHVPAALAGVAYMDRAIALGEGRMLNPPLVTGRMLVAA
AIRPGMRVLLVGGATGYTAALLAALGAQVHAVEEAPALLAIARSATADANIRWIEGPLAAGAPDAAPYDRIIIDGAIEVL
PDALAAQLAEGGRIVAARREGAVSRLVQGVKAGGAVALRSFADMDVAPLPGFAAPTGFRF

Sequences:

>Translated_220_residues
MATRFSEYTAAEMRAAMIDSQLRTNDVTDPAVVAAMGAVPREAHVPAALAGVAYMDRAIALGEGRMLNPPLVTGRMLVAA
AIRPGMRVLLVGGATGYTAALLAALGAQVHAVEEAPALLAIARSATADANIRWIEGPLAAGAPDAAPYDRIIIDGAIEVL
PDALAAQLAEGGRIVAARREGAVSRLVQGVKAGGAVALRSFADMDVAPLPGFAAPTGFRF
>Mature_219_residues
ATRFSEYTAAEMRAAMIDSQLRTNDVTDPAVVAAMGAVPREAHVPAALAGVAYMDRAIALGEGRMLNPPLVTGRMLVAAA
IRPGMRVLLVGGATGYTAALLAALGAQVHAVEEAPALLAIARSATADANIRWIEGPLAAGAPDAAPYDRIIIDGAIEVLP
DALAAQLAEGGRIVAARREGAVSRLVQGVKAGGAVALRSFADMDVAPLPGFAAPTGFRF

Specific function: Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins [H]

COG id: COG2518

COG function: function code O; Protein-L-isoaspartate carboxylmethyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. L- isoaspartyl/D-aspartyl protein methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI1789100, Length=163, Percent_Identity=34.9693251533742, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000682 [H]

Pfam domain/function: PF01135 PCMT [H]

EC number: =2.1.1.77 [H]

Molecular weight: Translated: 22461; Mature: 22330

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRFSEYTAAEMRAAMIDSQLRTNDVTDPAVVAAMGAVPREAHVPAALAGVAYMDRAIA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
LGEGRMLNPPLVTGRMLVAAAIRPGMRVLLVGGATGYTAALLAALGAQVHAVEEAPALLA
CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHH
IARSATADANIRWIEGPLAAGAPDAAPYDRIIIDGAIEVLPDALAAQLAEGGRIVAARRE
HHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECHH
GAVSRLVQGVKAGGAVALRSFADMDVAPLPGFAAPTGFRF
HHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATRFSEYTAAEMRAAMIDSQLRTNDVTDPAVVAAMGAVPREAHVPAALAGVAYMDRAIA
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
LGEGRMLNPPLVTGRMLVAAAIRPGMRVLLVGGATGYTAALLAALGAQVHAVEEAPALLA
CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHH
IARSATADANIRWIEGPLAAGAPDAAPYDRIIIDGAIEVLPDALAAQLAEGGRIVAARRE
HHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECHH
GAVSRLVQGVKAGGAVALRSFADMDVAPLPGFAAPTGFRF
HHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA