| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is pcm [H]
Identifier: 103487742
GI number: 103487742
Start: 2379675
End: 2380337
Strand: Direct
Name: pcm [H]
Synonym: Sala_2261
Alternate gene names: 103487742
Gene position: 2379675-2380337 (Clockwise)
Preceding gene: 103487737
Following gene: 103487743
Centisome position: 71.14
GC content: 72.85
Gene sequence:
>663_bases ATGGCGACGAGGTTTAGCGAATATACGGCGGCGGAAATGCGCGCCGCCATGATCGACAGCCAATTGAGGACGAACGACGT CACCGACCCCGCGGTCGTCGCGGCGATGGGCGCGGTGCCGCGCGAGGCGCATGTCCCCGCCGCGCTTGCCGGCGTCGCCT ATATGGACCGCGCGATCGCACTGGGCGAGGGACGGATGCTCAATCCTCCGCTCGTCACCGGCCGGATGCTCGTCGCCGCC GCCATCCGTCCGGGGATGCGCGTCCTGCTCGTCGGCGGCGCGACCGGCTACACCGCCGCGCTGCTCGCGGCCCTGGGTGC GCAAGTCCACGCGGTCGAGGAAGCGCCCGCGCTGCTCGCCATCGCCAGGTCGGCGACCGCCGACGCCAACATCCGCTGGA TCGAGGGGCCGCTCGCCGCCGGCGCGCCCGATGCCGCCCCCTATGACCGGATCATCATCGACGGCGCGATCGAAGTGCTG CCCGACGCGCTTGCCGCGCAGCTCGCCGAGGGCGGCCGCATCGTCGCCGCGCGGCGCGAAGGCGCGGTCTCGCGGCTCGT CCAGGGGGTGAAGGCGGGCGGTGCGGTCGCGCTACGCAGCTTTGCCGACATGGACGTTGCGCCGCTGCCCGGTTTCGCCG CCCCGACCGGCTTCCGTTTCTGA
Upstream 100 bases:
>100_bases CGGCAGCGGACCGCCGGGCTGTATTACTATTGCAATACAGCATCGCTTCGGCTAGAGCGGTCGCAAAGGATCAAGGCTCC AGGGAATCGGAACAAGGCTG
Downstream 100 bases:
>100_bases GCTGTCCCTCCCCCTCCTTGTTTCAGGCTGACACCACGATGACCGATAGCGACAAGAAACCGTGCCCTCGTCGTGCCCGC TGGCTTGCCGGCCTCGCCGC
Product: protein-L-isoaspartate(D-aspartate) O-methyltransferase
Products: NA
Alternate protein names: L-isoaspartyl protein carboxyl methyltransferase; Protein L-isoaspartyl methyltransferase; Protein-beta-aspartate methyltransferase; PIMT [H]
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MATRFSEYTAAEMRAAMIDSQLRTNDVTDPAVVAAMGAVPREAHVPAALAGVAYMDRAIALGEGRMLNPPLVTGRMLVAA AIRPGMRVLLVGGATGYTAALLAALGAQVHAVEEAPALLAIARSATADANIRWIEGPLAAGAPDAAPYDRIIIDGAIEVL PDALAAQLAEGGRIVAARREGAVSRLVQGVKAGGAVALRSFADMDVAPLPGFAAPTGFRF
Sequences:
>Translated_220_residues MATRFSEYTAAEMRAAMIDSQLRTNDVTDPAVVAAMGAVPREAHVPAALAGVAYMDRAIALGEGRMLNPPLVTGRMLVAA AIRPGMRVLLVGGATGYTAALLAALGAQVHAVEEAPALLAIARSATADANIRWIEGPLAAGAPDAAPYDRIIIDGAIEVL PDALAAQLAEGGRIVAARREGAVSRLVQGVKAGGAVALRSFADMDVAPLPGFAAPTGFRF >Mature_219_residues ATRFSEYTAAEMRAAMIDSQLRTNDVTDPAVVAAMGAVPREAHVPAALAGVAYMDRAIALGEGRMLNPPLVTGRMLVAAA IRPGMRVLLVGGATGYTAALLAALGAQVHAVEEAPALLAIARSATADANIRWIEGPLAAGAPDAAPYDRIIIDGAIEVLP DALAAQLAEGGRIVAARREGAVSRLVQGVKAGGAVALRSFADMDVAPLPGFAAPTGFRF
Specific function: Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins [H]
COG id: COG2518
COG function: function code O; Protein-L-isoaspartate carboxylmethyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. L- isoaspartyl/D-aspartyl protein methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1789100, Length=163, Percent_Identity=34.9693251533742, Blast_Score=83, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000682 [H]
Pfam domain/function: PF01135 PCMT [H]
EC number: =2.1.1.77 [H]
Molecular weight: Translated: 22461; Mature: 22330
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATRFSEYTAAEMRAAMIDSQLRTNDVTDPAVVAAMGAVPREAHVPAALAGVAYMDRAIA CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC LGEGRMLNPPLVTGRMLVAAAIRPGMRVLLVGGATGYTAALLAALGAQVHAVEEAPALLA CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHH IARSATADANIRWIEGPLAAGAPDAAPYDRIIIDGAIEVLPDALAAQLAEGGRIVAARRE HHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECHH GAVSRLVQGVKAGGAVALRSFADMDVAPLPGFAAPTGFRF HHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ATRFSEYTAAEMRAAMIDSQLRTNDVTDPAVVAAMGAVPREAHVPAALAGVAYMDRAIA CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC LGEGRMLNPPLVTGRMLVAAAIRPGMRVLLVGGATGYTAALLAALGAQVHAVEEAPALLA CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHH IARSATADANIRWIEGPLAAGAPDAAPYDRIIIDGAIEVLPDALAAQLAEGGRIVAARRE HHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECHH GAVSRLVQGVKAGGAVALRSFADMDVAPLPGFAAPTGFRF HHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA