| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487725
Identifier: 103487725
GI number: 103487725
Start: 2356458
End: 2357306
Strand: Direct
Name: 103487725
Synonym: Sala_2244
Alternate gene names: NA
Gene position: 2356458-2357306 (Clockwise)
Preceding gene: 103487724
Following gene: 103487726
Centisome position: 70.44
GC content: 70.2
Gene sequence:
>849_bases ATGACACGGCTCTTTCATATCAGCGACCTGCATTTCGGGCTCGAAGACCCGGCGGCGCTCGACTGGTTTACCGACTGCGT CCGCGCCGAGCGCCCCGACGCGGTCCTCATCACCGGCGACCTCACGATGCGCGCGCGCGCGCATGAGTTTGCCGCAGCGT GCGACTGGATCGAAACGCTCGACGTGCCCGTGACGGTCGAGGTCGGCAACCACGACCTGCCCTATTTCAATCCGGTCGCG CGCTTCTTTCATCCCTATCGCCGTATCCGCCGCATCGAACGGCTCGTCGAGCGCGAAATCGACCTGCCCGGCCTGGCGAT CGTGTCGCTCAAGACCACCGCGCGCGCGCAGTGGCGGCTCGACTGGTCGAAAGGATGGGTGACCGACAAGGCGCTCGCCC GCACGCTCGCCGCGATCGACGCGCTGCCCCCCGGCGCCATGCCACTCGTCACCGCGCATCATCCGCTGGTCGAGGCGGGC ACGAAAGGCCGCGCGCTGACCCGCGGCGGCGAGCGCGCGCTGGCGGCCTTGGCAAAGCGCGGCGTCGCGGCGGTGCTGAC CGGCCACGTCCATGATGCTTTCGACCTGGTGAAACAGACCGCGGGCGGGCCGATCCGCATGATCGGCGCCGGGACGCTGT CGCAGCGCATCCGTTCGACCCCGCCCAGCTTCAACGACCTGCTGGTCAGGGGCCGCGCGCTGTCGGTGCGCGTGCGCAAT CTGGCCGACGTGCCGACCCCCGACATGCAGATTACCGACATCCCGGCCGACGCGCTGCCGCCGCGCGATCCCGGCGAACC CGTCGCGCCCGTCCACGCCGTCCCGCCCGTCGATCCGCCGGTGCATTGA
Upstream 100 bases:
>100_bases ACGCGCCGATCAGCCTCGAATATGACGGCGAACTCAAGGAAACGGAATCGCCCGCGCGCTTCGCGCTCGGCACGAGCACG GTCGATTTCATCGCGACGGC
Downstream 100 bases:
>100_bases CGCGCGCGTCCATCCCGTTAGGTTGCAACAAAAAACGGGATGAGGGACGATGCTGACCAAGGGCGACGATTACCCGCTGC ACCAGCGCGCCGAGCCGATC
Product: metallophosphoesterase
Products: NA
Alternate protein names: Phosphohydrolase; 3 5'-Cyclic-Nucleotide Phosphodiesterase; DNA Repair Exonuclease; Ser/Thr Protein Phosphatase Family Protein; Metallo-Phosphoesterase; Calcineurin-Like Phosphoesterase Family; Metallophosphoesterase Protein; Phosphodiesterase
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MTRLFHISDLHFGLEDPAALDWFTDCVRAERPDAVLITGDLTMRARAHEFAAACDWIETLDVPVTVEVGNHDLPYFNPVA RFFHPYRRIRRIERLVEREIDLPGLAIVSLKTTARAQWRLDWSKGWVTDKALARTLAAIDALPPGAMPLVTAHHPLVEAG TKGRALTRGGERALAALAKRGVAAVLTGHVHDAFDLVKQTAGGPIRMIGAGTLSQRIRSTPPSFNDLLVRGRALSVRVRN LADVPTPDMQITDIPADALPPRDPGEPVAPVHAVPPVDPPVH
Sequences:
>Translated_282_residues MTRLFHISDLHFGLEDPAALDWFTDCVRAERPDAVLITGDLTMRARAHEFAAACDWIETLDVPVTVEVGNHDLPYFNPVA RFFHPYRRIRRIERLVEREIDLPGLAIVSLKTTARAQWRLDWSKGWVTDKALARTLAAIDALPPGAMPLVTAHHPLVEAG TKGRALTRGGERALAALAKRGVAAVLTGHVHDAFDLVKQTAGGPIRMIGAGTLSQRIRSTPPSFNDLLVRGRALSVRVRN LADVPTPDMQITDIPADALPPRDPGEPVAPVHAVPPVDPPVH >Mature_281_residues TRLFHISDLHFGLEDPAALDWFTDCVRAERPDAVLITGDLTMRARAHEFAAACDWIETLDVPVTVEVGNHDLPYFNPVAR FFHPYRRIRRIERLVEREIDLPGLAIVSLKTTARAQWRLDWSKGWVTDKALARTLAAIDALPPGAMPLVTAHHPLVEAGT KGRALTRGGERALAALAKRGVAAVLTGHVHDAFDLVKQTAGGPIRMIGAGTLSQRIRSTPPSFNDLLVRGRALSVRVRNL ADVPTPDMQITDIPADALPPRDPGEPVAPVHAVPPVDPPVH
Specific function: Unknown
COG id: COG1409
COG function: function code R; Predicted phosphohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30822; Mature: 30691
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLFHISDLHFGLEDPAALDWFTDCVRAERPDAVLITGDLTMRARAHEFAAACDWIETL CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHC DVPVTVEVGNHDLPYFNPVARFFHPYRRIRRIERLVEREIDLPGLAIVSLKTTARAQWRL CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEE DWSKGWVTDKALARTLAAIDALPPGAMPLVTAHHPLVEAGTKGRALTRGGERALAALAKR ECCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHCCCCCCEECCCHHHHHHHHHHC GVAAVLTGHVHDAFDLVKQTAGGPIRMIGAGTLSQRIRSTPPSFNDLLVRGRALSVRVRN CCEEEEECCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCHHHHHCCCCEEEEEEHH LADVPTPDMQITDIPADALPPRDPGEPVAPVHAVPPVDPPVH HCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TRLFHISDLHFGLEDPAALDWFTDCVRAERPDAVLITGDLTMRARAHEFAAACDWIETL CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHC DVPVTVEVGNHDLPYFNPVARFFHPYRRIRRIERLVEREIDLPGLAIVSLKTTARAQWRL CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEE DWSKGWVTDKALARTLAAIDALPPGAMPLVTAHHPLVEAGTKGRALTRGGERALAALAKR ECCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHCCCCCCEECCCHHHHHHHHHHC GVAAVLTGHVHDAFDLVKQTAGGPIRMIGAGTLSQRIRSTPPSFNDLLVRGRALSVRVRN CCEEEEECCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCHHHHHCCCCEEEEEEHH LADVPTPDMQITDIPADALPPRDPGEPVAPVHAVPPVDPPVH HCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA