| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is iap [C]
Identifier: 103487694
GI number: 103487694
Start: 2324212
End: 2325732
Strand: Reverse
Name: iap [C]
Synonym: Sala_2213
Alternate gene names: 103487694
Gene position: 2325732-2324212 (Counterclockwise)
Preceding gene: 103487695
Following gene: 103487692
Centisome position: 69.53
GC content: 68.51
Gene sequence:
>1521_bases ATGTCATGCCGCGCGCCCATGAAAGCCTCCTTCTTTCGCGCCGCCGTTGCGGCCGTCGCCCTCGTCGCCACGTCCGCTCC CGCGCAGGCCGCATCCGCGACCGCCGATGCGCCGGTCACCGAAGCCGACCTCGCCGCGCACATGAAAATCCTGGCCGGGG ATGCGTTCGAGGGGCGCGCGCCGGGCACCGATGGCGAGGATCGCACGATCGCCTATATCGTCGGCGAATGGGCGAAGGCG GGGCTCGAAGCCGTGCCGGGCAGCGCGACGCCGTGGCTCCAGCCGGTGCCCTTCATCGAAACGCAGGCGCTCGGCGGGAC AGCGACCTTCAACGTGAACGGCCGCAATTTTCCGCTAGACGATGACAGCATCGTGCTCACCGGGCGCGATGCGTCGGTGT CGCTGGCGGGCGTCCCCGCGGTCTTCGTCGGCTATGGCATCGACAGCACCGGACAGGTGAATGCCGACGTCCGCGGCAAA CTCGCGATCATGCTGTTCGACAATGCGCCTTTTGGCGACAGATTGCCGCGCTATCGCGAGCGGCGCCAGATGCTCGCCGA TGCGGGGGCGAGCGCGGTGTTGGTGATCGCGACCGACGCGGTGCCGTGGGACGCACTGCGCGAGAGTGTCGGCAGCAAAT CCATGCGCCTTGCCAGCGTCAAGGCGGGTGCGCCGGTGAGCGGTTTCCTGTCAGGCAACGCGGCCGACGCACTGTTCAAG GCCGCTGGGCAGGATGGCGCCGCGCTGCGCGAAGCGGCCGCGTCGGCCGACTATCGGGGTATGGCGCTGCCGGTGGCTGC CGACTTCACCGCAGAGTCGACGGTCCGCGCCTTTGCGAGCCACAATATCATCGCCAAACTGCCCGGCGCGAAGCCCGACG GCAAGGCGGTGCTGTTTCTGGGACATTGGGACCATCTGGGCCTTTGCGCGCCCGAGGGCGAGGCCGACCGCATCTGTAAC GGCGCGGTCGACAATGCGAGCGGGATCGCGGTACTGATCGAGGTCGCGAAGCGGCTGGGCAAGGGGCCGCGCCCCGATCG CGACATCTATTTCCTCGCGACGACGGCGGAGGAAAAGGGCCTGCTCGGCGCGCGCTGGTTCGCCGACCATCCGGTGGTGC CGCTTGGCGACATCACCGTGGCACTCAACGTCGACACGATCGCAATCTCGCCGCGCGGCACGCCGGTCGCGACGATCGGG CGCGGCAAGCCCGCCTATGACGCGCTGGTGCGCGAGGTGGCGACCAGGCTCGGCCGCACGCTCGACGAGGATGGCGAGGC CGACGCCTTCATCCAGCGACAGGACGGCTGGGCGCTGGGTGCGAAGGGCGTCACCTCGCTGATGGTCGGCGGCAGCTTTT CGGACATGAAGCTGCTCGAAGCCTTTTTGTCGGGCGATTATCACCGCGCGGCCGACAATTTCTCCGACAAGATCCCGCTC GGAGGGGCGGCCGAGGATGCCGATTTGCACGTCGCGCTCGGCCGGGCGTTCGCCGATACGAAACGGTGGCCGGGCAAGTA A
Upstream 100 bases:
>100_bases GCCGGGATGACGAATTGAGAAAACGGGATGATGGCGAGAGAATAAAGAACGCCGCCGCCCTTCGTCGTTCGACGAACCGC CTTGCCTGCCCGTGGCGGAA
Downstream 100 bases:
>100_bases TTCTCTAGATCGTCATTGCGAGGAGCCGGAGGCGACGCGGCAATCTCCAGCCCTCGATCTTACGCAAAGGTCGAGGGCTG GAGATTGCTTCGCTTCGCTC
Product: peptidase M28
Products: NA
Alternate protein names: Aminopeptidase; Peptidase; M28 Family Peptidase; Glutamate Carboxypeptidase II; M20/M25/M40 Family Peptidase; Aminopeptidase Family; M28 Family Aminopeptidase; Protein Containing Aminopeptidase Domain; M23B Family Peptidase; PDZ Domain-Containing Protein
Number of amino acids: Translated: 506; Mature: 505
Protein sequence:
>506_residues MSCRAPMKASFFRAAVAAVALVATSAPAQAASATADAPVTEADLAAHMKILAGDAFEGRAPGTDGEDRTIAYIVGEWAKA GLEAVPGSATPWLQPVPFIETQALGGTATFNVNGRNFPLDDDSIVLTGRDASVSLAGVPAVFVGYGIDSTGQVNADVRGK LAIMLFDNAPFGDRLPRYRERRQMLADAGASAVLVIATDAVPWDALRESVGSKSMRLASVKAGAPVSGFLSGNAADALFK AAGQDGAALREAAASADYRGMALPVAADFTAESTVRAFASHNIIAKLPGAKPDGKAVLFLGHWDHLGLCAPEGEADRICN GAVDNASGIAVLIEVAKRLGKGPRPDRDIYFLATTAEEKGLLGARWFADHPVVPLGDITVALNVDTIAISPRGTPVATIG RGKPAYDALVREVATRLGRTLDEDGEADAFIQRQDGWALGAKGVTSLMVGGSFSDMKLLEAFLSGDYHRAADNFSDKIPL GGAAEDADLHVALGRAFADTKRWPGK
Sequences:
>Translated_506_residues MSCRAPMKASFFRAAVAAVALVATSAPAQAASATADAPVTEADLAAHMKILAGDAFEGRAPGTDGEDRTIAYIVGEWAKA GLEAVPGSATPWLQPVPFIETQALGGTATFNVNGRNFPLDDDSIVLTGRDASVSLAGVPAVFVGYGIDSTGQVNADVRGK LAIMLFDNAPFGDRLPRYRERRQMLADAGASAVLVIATDAVPWDALRESVGSKSMRLASVKAGAPVSGFLSGNAADALFK AAGQDGAALREAAASADYRGMALPVAADFTAESTVRAFASHNIIAKLPGAKPDGKAVLFLGHWDHLGLCAPEGEADRICN GAVDNASGIAVLIEVAKRLGKGPRPDRDIYFLATTAEEKGLLGARWFADHPVVPLGDITVALNVDTIAISPRGTPVATIG RGKPAYDALVREVATRLGRTLDEDGEADAFIQRQDGWALGAKGVTSLMVGGSFSDMKLLEAFLSGDYHRAADNFSDKIPL GGAAEDADLHVALGRAFADTKRWPGK >Mature_505_residues SCRAPMKASFFRAAVAAVALVATSAPAQAASATADAPVTEADLAAHMKILAGDAFEGRAPGTDGEDRTIAYIVGEWAKAG LEAVPGSATPWLQPVPFIETQALGGTATFNVNGRNFPLDDDSIVLTGRDASVSLAGVPAVFVGYGIDSTGQVNADVRGKL AIMLFDNAPFGDRLPRYRERRQMLADAGASAVLVIATDAVPWDALRESVGSKSMRLASVKAGAPVSGFLSGNAADALFKA AGQDGAALREAAASADYRGMALPVAADFTAESTVRAFASHNIIAKLPGAKPDGKAVLFLGHWDHLGLCAPEGEADRICNG AVDNASGIAVLIEVAKRLGKGPRPDRDIYFLATTAEEKGLLGARWFADHPVVPLGDITVALNVDTIAISPRGTPVATIGR GKPAYDALVREVATRLGRTLDEDGEADAFIQRQDGWALGAKGVTSLMVGGSFSDMKLLEAFLSGDYHRAADNFSDKIPLG GAAEDADLHVALGRAFADTKRWPGK
Specific function: This Protein, Presumably An Aminopeptidase, Mediates The Conversion Of E.Coli Alkaline Phosphatase Isozyme 1, To Isozymes 2 And 3 By Removing, One By One, The Two Amino-Terminal Arginine Residues. [C]
COG id: COG2234
COG function: function code R; Predicted aminopeptidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.4.11.- [C]
Molecular weight: Translated: 52550; Mature: 52419
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCRAPMKASFFRAAVAAVALVATSAPAQAASATADAPVTEADLAAHMKILAGDAFEGRA CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHEECCCCCCCC PGTDGEDRTIAYIVGEWAKAGLEAVPGSATPWLQPVPFIETQALGGTATFNVNGRNFPLD CCCCCCCCEEEEEEEHHHHCCHHHCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCC DDSIVLTGRDASVSLAGVPAVFVGYGIDSTGQVNADVRGKLAIMLFDNAPFGDRLPRYRE CCCEEEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHH RRQMLADAGASAVLVIATDAVPWDALRESVGSKSMRLASVKAGAPVSGFLSGNAADALFK HHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCEEEECCCHHHHHHH AAGQDGAALREAAASADYRGMALPVAADFTAESTVRAFASHNIIAKLPGAKPDGKAVLFL HCCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEE GHWDHLGLCAPEGEADRICNGAVDNASGIAVLIEVAKRLGKGPRPDRDIYFLATTAEEKG ECCCCCCEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC LLGARWFADHPVVPLGDITVALNVDTIAISPRGTPVATIGRGKPAYDALVREVATRLGRT CEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCC LDEDGEADAFIQRQDGWALGAKGVTSLMVGGSFSDMKLLEAFLSGDYHRAADNFSDKIPL CCCCCCCCEEEEECCCCEECCCCHHHEEECCCCHHHHHHHHHHCCCHHHHHCCCCCCCCC GGAAEDADLHVALGRAFADTKRWPGK CCCCCCCCEEEEECHHHHHCCCCCCC >Mature Secondary Structure SCRAPMKASFFRAAVAAVALVATSAPAQAASATADAPVTEADLAAHMKILAGDAFEGRA CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHEECCCCCCCC PGTDGEDRTIAYIVGEWAKAGLEAVPGSATPWLQPVPFIETQALGGTATFNVNGRNFPLD CCCCCCCCEEEEEEEHHHHCCHHHCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCC DDSIVLTGRDASVSLAGVPAVFVGYGIDSTGQVNADVRGKLAIMLFDNAPFGDRLPRYRE CCCEEEECCCCEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHH RRQMLADAGASAVLVIATDAVPWDALRESVGSKSMRLASVKAGAPVSGFLSGNAADALFK HHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCEEEECCCHHHHHHH AAGQDGAALREAAASADYRGMALPVAADFTAESTVRAFASHNIIAKLPGAKPDGKAVLFL HCCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEE GHWDHLGLCAPEGEADRICNGAVDNASGIAVLIEVAKRLGKGPRPDRDIYFLATTAEEKG ECCCCCCEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC LLGARWFADHPVVPLGDITVALNVDTIAISPRGTPVATIGRGKPAYDALVREVATRLGRT CEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCC LDEDGEADAFIQRQDGWALGAKGVTSLMVGGSFSDMKLLEAFLSGDYHRAADNFSDKIPL CCCCCCCCEEEEECCCCEECCCCHHHEEECCCCHHHHHHHHHHCCCHHHHHCCCCCCCCC GGAAEDADLHVALGRAFADTKRWPGK CCCCCCCCEEEEECHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Aminopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA