| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487565
Identifier: 103487565
GI number: 103487565
Start: 2190457
End: 2191347
Strand: Reverse
Name: 103487565
Synonym: Sala_2084
Alternate gene names: NA
Gene position: 2191347-2190457 (Counterclockwise)
Preceding gene: 103487569
Following gene: 103487562
Centisome position: 65.51
GC content: 64.87
Gene sequence:
>891_bases ATGTCCAGCCTTTCCCGGTCTCCCACCCCCGCCGATCTGTCGATCACCCCGCGCGACATGCGCTTTGGCCGCGACGACAA ACAGGGCCGCTGGTGGCTGAACGGCGATCCGATCGCCTCGGCCTTTCACACCGCGCTGTCGGTCACCTTTCCCAAGGGCG AGGCGATGTTCATCGAGGCGGTGAAGGCGCACCGGGGCGGCGTTCCCGAAAAGCTGGCGCGCGAAATCCGCGCCTTTACC CAGCAGGAAGTGATCCACAGCCGCGAGCATGTGGTGTTCAACAGGAAGGCGGCCGAGGCGGGGTATGACCTCAGCGAACT CGAAGCCGACGTCGACGAGGTGATGGACATCATCAAGGCGCGGCCGCCGATCGTCAACCTGATGGCGACGATCGCGCTCG AACATTATACCGCGATGATGGCGGCGGTGATGCTGCGCGACGAGAAAATGTATGCGGGCGCCGAACCCGAATGGGCAATG CTGTGGAAATGGCACGCAATCGAGGAAATCGAGCATAAGGGCGTCGCCTATGACACCTGGCTGCACGCGACGAGGGACTG GAGCCGGCTTAGGCGCTGGCGCGCCAGGTCGCTGATGATGCTGCTCGTCACCGCGCGCTTCTGGCCCAAGCGGGTGAAGG GGATGAAGGCGCTGCTGCGGCAGGACGGGCTGACCGGCTGGCGCGTCACCGCGCGTATCTGGTGGTATCTGCTCGGTTCG CCGGGCGTGCTGCGCAAAAGCTTTCTGCCCTGGCTGTCCTATTTCATGCCGGGTTTCCACCCGTGGAACCACGACGACCG CGCGCTGATCGGCAAATATGAAAGCGACTATGCCGACGCGGTGATGCCGGCGCATTCGTCGCGCCCCGACCGGGCCGCGG CTGCGGCCTGA
Upstream 100 bases:
>100_bases ACGGCTTTCTTCGGGACTGAGACGCTTTTTGACTATTGACATTTATGTAAGTTAAACCCTATTGCTGACCCCGACACCCC TTTTCGACGGTAAACGCCAT
Downstream 100 bases:
>100_bases GCATCCTTTCCTGCGAAGGCGGGCCGTCCGGAGCGGTCCTCTCTCTCCCCGTCTCCGGGGCCTGCCTTTGCGGGAGTCGC GGCGTCTCAATGCCCCATGT
Product: FF domain-containing protein
Products: NA
Alternate protein names: Metal-Dependent Hydrolase-Like Protein; FF Domain-Containing Protein; FF Domain Protein; Conserved Protein UCP; Metal-Dependent Hydrolase-Like; Metal Hydrolase
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MSSLSRSPTPADLSITPRDMRFGRDDKQGRWWLNGDPIASAFHTALSVTFPKGEAMFIEAVKAHRGGVPEKLAREIRAFT QQEVIHSREHVVFNRKAAEAGYDLSELEADVDEVMDIIKARPPIVNLMATIALEHYTAMMAAVMLRDEKMYAGAEPEWAM LWKWHAIEEIEHKGVAYDTWLHATRDWSRLRRWRARSLMMLLVTARFWPKRVKGMKALLRQDGLTGWRVTARIWWYLLGS PGVLRKSFLPWLSYFMPGFHPWNHDDRALIGKYESDYADAVMPAHSSRPDRAAAAA
Sequences:
>Translated_296_residues MSSLSRSPTPADLSITPRDMRFGRDDKQGRWWLNGDPIASAFHTALSVTFPKGEAMFIEAVKAHRGGVPEKLAREIRAFT QQEVIHSREHVVFNRKAAEAGYDLSELEADVDEVMDIIKARPPIVNLMATIALEHYTAMMAAVMLRDEKMYAGAEPEWAM LWKWHAIEEIEHKGVAYDTWLHATRDWSRLRRWRARSLMMLLVTARFWPKRVKGMKALLRQDGLTGWRVTARIWWYLLGS PGVLRKSFLPWLSYFMPGFHPWNHDDRALIGKYESDYADAVMPAHSSRPDRAAAAA >Mature_295_residues SSLSRSPTPADLSITPRDMRFGRDDKQGRWWLNGDPIASAFHTALSVTFPKGEAMFIEAVKAHRGGVPEKLAREIRAFTQ QEVIHSREHVVFNRKAAEAGYDLSELEADVDEVMDIIKARPPIVNLMATIALEHYTAMMAAVMLRDEKMYAGAEPEWAML WKWHAIEEIEHKGVAYDTWLHATRDWSRLRRWRARSLMMLLVTARFWPKRVKGMKALLRQDGLTGWRVTARIWWYLLGSP GVLRKSFLPWLSYFMPGFHPWNHDDRALIGKYESDYADAVMPAHSSRPDRAAAAA
Specific function: Unknown
COG id: COG3687
COG function: function code R; Predicted metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34003; Mature: 33871
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSLSRSPTPADLSITPRDMRFGRDDKQGRWWLNGDPIASAFHTALSVTFPKGEAMFIEA CCCCCCCCCCCCCEECHHHHHCCCCCCCCEEEECCCHHHHHHHHHHEEECCCCCHHHHHH VKAHRGGVPEKLAREIRAFTQQEVIHSREHVVFNRKAAEAGYDLSELEADVDEVMDIIKA HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHCCCCHHHHHHHHHHHHHHHHC RPPIVNLMATIALEHYTAMMAAVMLRDEKMYAGAEPEWAMLWKWHAIEEIEHKGVAYDTW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCHHHH LHATRDWSRLRRWRARSLMMLLVTARFWPKRVKGMKALLRQDGLTGWRVTARIWWYLLGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC PGVLRKSFLPWLSYFMPGFHPWNHDDRALIGKYESDYADAVMPAHSSRPDRAAAAA CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCHHHCCC >Mature Secondary Structure SSLSRSPTPADLSITPRDMRFGRDDKQGRWWLNGDPIASAFHTALSVTFPKGEAMFIEA CCCCCCCCCCCCEECHHHHHCCCCCCCCEEEECCCHHHHHHHHHHEEECCCCCHHHHHH VKAHRGGVPEKLAREIRAFTQQEVIHSREHVVFNRKAAEAGYDLSELEADVDEVMDIIKA HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHCCCCHHHHHHHHHHHHHHHHC RPPIVNLMATIALEHYTAMMAAVMLRDEKMYAGAEPEWAMLWKWHAIEEIEHKGVAYDTW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHCCCCHHHH LHATRDWSRLRRWRARSLMMLLVTARFWPKRVKGMKALLRQDGLTGWRVTARIWWYLLGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC PGVLRKSFLPWLSYFMPGFHPWNHDDRALIGKYESDYADAVMPAHSSRPDRAAAAA CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA