| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is omp85 [H]
Identifier: 103487436
GI number: 103487436
Start: 2057358
End: 2060021
Strand: Reverse
Name: omp85 [H]
Synonym: Sala_1952
Alternate gene names: 103487436
Gene position: 2060021-2057358 (Counterclockwise)
Preceding gene: 103487437
Following gene: 103487435
Centisome position: 61.58
GC content: 61.52
Gene sequence:
>2664_bases GTGGCTTCACACAAAATCTTGGGCCGGACACAGCTGTCGGTGGCTCTTCTGGCCGGTACGATGCTCAGCGCGCCGCTGAT GGCGCAGGATGTTGCGCCGCCAACCGTGCCCGCACCGACCGTTCCCGCGCCCGCGCCCGAAGCGGCGCCGACCGCGACGA CGATCCAGTCGATCACCGTCACCGGCAACCAGCGGCTCGAGGCGCAGACGATCCTGTCGTACCTGCGCTTGCGCGTCGGT CAGACCTATGACCGTGCGACGCTCGACCAGGCGCTGAAGGACCTCGCCGCGACCGAATTGTTCAAGGATTTCCAGATCAC CGACAACAATGGTGCGCTGCAGATCCAGGTGACCGAAAACCCGGTGATCAACCGCGTGATCCTGGAGGGTAACAAGCGGC TCAAGGAAGACAAGATCCGCCCGGAGATCAAGCTCGCGCCGCGCCAGATTTTCACCCGGTCCAAGGTGCGCGCCGACGTC GCGCGCATCATCGAGCTGTACAAGCGCCAGGGCCGTTTCGCCGCGACCGTCGAGCCCAAGATGGTGTCGCTCGACCAGAA CCGCGTCGATGTGGTGTTCGAGATCAACGAAGGGCCGAAATCGAAGGTTCGACAGATCAACATCATCGGCAACGAAAAGT TCAGCGACGGCGACCTCAAGGACGAGATGGCGACGAAGGAAACGGGGTTGCTCACGATCCTGTCGTCGAACACCAGCTAT GACCCCGACCGCCTTGCCTATGACCAGCAGAAGCTGCGGCTTTTCTATCTGACCAACGGCTATGCCGATTTCCGCGTCAT TTCGGCGGTCGCGGAGCTGACGAGCAACAAGCAGGATTTCATCATCACCTATGTCGTCGAGGAGGGCGAGCGCTACAAGT TCGGCAACGTCGACGTGAAGAGCGAGCTGCGCGACTTCCAGCCTGAAATGCTGAAGAGGCTGCTGCCGATGAAAAGCGGC GACTGGTACGACGCCAAGCTGGTCGAGGATACGGTCGAAAGCCTCAGCGAAACCGCCGGCCTGTTCGGTTACGCCTTTGC CGACATCAATCCTGAGTTCCGCCGTAATCCCGACGACCGGACGATGGACATCACCTTCAACGTCGCCGAAAGCCCGCGCA CCTATGTCGAGCGCATCGACGTCAACGGCAACACGCTGACCCACGACAAGGTGGTGCGCCGCGAGTTCCGCCTCAATGAA GGCGATGCGTTCAACAGCTTTGGCGTCAAGCGCACCGAGAATCGCATCAACAGCCTTGGCTATTTCCAGGAAAATCTGGA AATCGAGCGCAAGGAAGGCAGCACGCCCGACCGCATCATCCTGGAAACCAATGTCGAGGAAAAACCGACCGGCGAGCTGT CGCTGTCGGCGGGTTTCTCCTCGATCGAGAATTTCCTGCTCCAGGCGTCGATCCGCCAGCGCAATTTCCGCGGCCTGGGC CAGCAATTGCAGGCGTCGGTCAATTATTCGAGCTATTCGAAGTCGATCGAACTGGGTTTCACCGAACCCTATCTGTTCGA TCGCAACATCTCGGTCGGCGGCAGCGTCTATCGTCGCGACCTCAATTCGTTCAACTTCATCGACAACGACCGCCGGACGA CGTTCGAGCAGGTCACGACCGGGTTCCAGATCAACGCCGGCGTGCCGCTTACCGAGTTCCTCTCCTTCTTTGGCCGCTAC AGCCTCAACTATGATGATGTGACGCTCGACCGGTCGATCTACTTCTTTGGCGACCAGTGCGATCCGCTGGTGGCAGGCCG CTATCTTTGCGATGCGATCGGCAAGCGGACGACCTCGCTCGTCGGCTTCACCCTCGCCTATGACGACCGCGACAACCGGA TTCGCCCGACGCGCGGCCAGTCGGCGTCGATCAGCCAGGATTTCGCGGGTCTGGGCGGCAGCGTCAAATATGTCCGCACG CGGCTTGCCGGGTCCAAGCATTTCAACCTCGGCAGCCGCTTCATCCTCAACCTTTCGGCCGAAGGCGGCTATATCCACCC CTTTGGCAGCGCGCCCACGCCGACAAGCGACAAGGTGCGCCTGACCGATCGCTTCTTCCTCGGCGAACCGCAGATGCGCG GCTTCGACATTCGCGGCGTCGGCCCGCGCGTGATCCGTTTTGCCGCGATCTATGATCCTCTGAACCCGGTGATCGACACG AGCAACGACAATCGCGGCCAGATCGACGACGCGCTCGGGGGCCGCGCCTATTATCAGGGGCGGGTCGAGCTCGACATTCC GCTCGGCACCGGGGCGAAGGAACTGGGTCTCAGGCCGTCGATCTTCCTCGACGTCGGGTCGGTGTTCAGTGTCAAGCGTC CGACGCTCACGACGCTCGCCGACTTCCGCGATCCTGCCGACGGGCTGACGAAGTTCCTGTGCCGCAATGCGACCACGGGT GTGACGCAATTCGCAACGAACACGCCCGACGCTTCGGGCGCGCCGACCGGCCAGTTCACCACTTGCGCGGCCGGCTTTTC GGCGCTCGCGCCGTTCGAGGAACGCTTCTTTGGCGACACCTGGATGCCGCGCGTCGCGATCGGCGCCGGGGTCAACTGGA ACTCCCCCTTCGGTCCCTTCCGGATCGACTTCGCTTACGCCCTTCGCAAAGAAGAGGGCGATGATACCAAACGCTTCTCA TTCAATGTAGGAACTCAATTCTGA
Upstream 100 bases:
>100_bases TCGCGCGCTTGATTGGCTAGCGAGTCTGGGGCAGGGAGTGCGCGCAAGCCCGCGGTCAGGCGGGTTTGTCGTTTTTTGAG TATTTTTCGGGATGAACGGC
Downstream 100 bases:
>100_bases TGAAAAAACTTCTTGCCGCTTCCGCGCTGGCGATCGCCGCGCTGTCGGTCTCACCCATCCTGTCGGCCCCGGCCATTGCG CAGGCGAAGGGCGTGGCGGT
Product: surface antigen (D15)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 887; Mature: 886
Protein sequence:
>887_residues MASHKILGRTQLSVALLAGTMLSAPLMAQDVAPPTVPAPTVPAPAPEAAPTATTIQSITVTGNQRLEAQTILSYLRLRVG QTYDRATLDQALKDLAATELFKDFQITDNNGALQIQVTENPVINRVILEGNKRLKEDKIRPEIKLAPRQIFTRSKVRADV ARIIELYKRQGRFAATVEPKMVSLDQNRVDVVFEINEGPKSKVRQINIIGNEKFSDGDLKDEMATKETGLLTILSSNTSY DPDRLAYDQQKLRLFYLTNGYADFRVISAVAELTSNKQDFIITYVVEEGERYKFGNVDVKSELRDFQPEMLKRLLPMKSG DWYDAKLVEDTVESLSETAGLFGYAFADINPEFRRNPDDRTMDITFNVAESPRTYVERIDVNGNTLTHDKVVRREFRLNE GDAFNSFGVKRTENRINSLGYFQENLEIERKEGSTPDRIILETNVEEKPTGELSLSAGFSSIENFLLQASIRQRNFRGLG QQLQASVNYSSYSKSIELGFTEPYLFDRNISVGGSVYRRDLNSFNFIDNDRRTTFEQVTTGFQINAGVPLTEFLSFFGRY SLNYDDVTLDRSIYFFGDQCDPLVAGRYLCDAIGKRTTSLVGFTLAYDDRDNRIRPTRGQSASISQDFAGLGGSVKYVRT RLAGSKHFNLGSRFILNLSAEGGYIHPFGSAPTPTSDKVRLTDRFFLGEPQMRGFDIRGVGPRVIRFAAIYDPLNPVIDT SNDNRGQIDDALGGRAYYQGRVELDIPLGTGAKELGLRPSIFLDVGSVFSVKRPTLTTLADFRDPADGLTKFLCRNATTG VTQFATNTPDASGAPTGQFTTCAAGFSALAPFEERFFGDTWMPRVAIGAGVNWNSPFGPFRIDFAYALRKEEGDDTKRFS FNVGTQF
Sequences:
>Translated_887_residues MASHKILGRTQLSVALLAGTMLSAPLMAQDVAPPTVPAPTVPAPAPEAAPTATTIQSITVTGNQRLEAQTILSYLRLRVG QTYDRATLDQALKDLAATELFKDFQITDNNGALQIQVTENPVINRVILEGNKRLKEDKIRPEIKLAPRQIFTRSKVRADV ARIIELYKRQGRFAATVEPKMVSLDQNRVDVVFEINEGPKSKVRQINIIGNEKFSDGDLKDEMATKETGLLTILSSNTSY DPDRLAYDQQKLRLFYLTNGYADFRVISAVAELTSNKQDFIITYVVEEGERYKFGNVDVKSELRDFQPEMLKRLLPMKSG DWYDAKLVEDTVESLSETAGLFGYAFADINPEFRRNPDDRTMDITFNVAESPRTYVERIDVNGNTLTHDKVVRREFRLNE GDAFNSFGVKRTENRINSLGYFQENLEIERKEGSTPDRIILETNVEEKPTGELSLSAGFSSIENFLLQASIRQRNFRGLG QQLQASVNYSSYSKSIELGFTEPYLFDRNISVGGSVYRRDLNSFNFIDNDRRTTFEQVTTGFQINAGVPLTEFLSFFGRY SLNYDDVTLDRSIYFFGDQCDPLVAGRYLCDAIGKRTTSLVGFTLAYDDRDNRIRPTRGQSASISQDFAGLGGSVKYVRT RLAGSKHFNLGSRFILNLSAEGGYIHPFGSAPTPTSDKVRLTDRFFLGEPQMRGFDIRGVGPRVIRFAAIYDPLNPVIDT SNDNRGQIDDALGGRAYYQGRVELDIPLGTGAKELGLRPSIFLDVGSVFSVKRPTLTTLADFRDPADGLTKFLCRNATTG VTQFATNTPDASGAPTGQFTTCAAGFSALAPFEERFFGDTWMPRVAIGAGVNWNSPFGPFRIDFAYALRKEEGDDTKRFS FNVGTQF >Mature_886_residues ASHKILGRTQLSVALLAGTMLSAPLMAQDVAPPTVPAPTVPAPAPEAAPTATTIQSITVTGNQRLEAQTILSYLRLRVGQ TYDRATLDQALKDLAATELFKDFQITDNNGALQIQVTENPVINRVILEGNKRLKEDKIRPEIKLAPRQIFTRSKVRADVA RIIELYKRQGRFAATVEPKMVSLDQNRVDVVFEINEGPKSKVRQINIIGNEKFSDGDLKDEMATKETGLLTILSSNTSYD PDRLAYDQQKLRLFYLTNGYADFRVISAVAELTSNKQDFIITYVVEEGERYKFGNVDVKSELRDFQPEMLKRLLPMKSGD WYDAKLVEDTVESLSETAGLFGYAFADINPEFRRNPDDRTMDITFNVAESPRTYVERIDVNGNTLTHDKVVRREFRLNEG DAFNSFGVKRTENRINSLGYFQENLEIERKEGSTPDRIILETNVEEKPTGELSLSAGFSSIENFLLQASIRQRNFRGLGQ QLQASVNYSSYSKSIELGFTEPYLFDRNISVGGSVYRRDLNSFNFIDNDRRTTFEQVTTGFQINAGVPLTEFLSFFGRYS LNYDDVTLDRSIYFFGDQCDPLVAGRYLCDAIGKRTTSLVGFTLAYDDRDNRIRPTRGQSASISQDFAGLGGSVKYVRTR LAGSKHFNLGSRFILNLSAEGGYIHPFGSAPTPTSDKVRLTDRFFLGEPQMRGFDIRGVGPRVIRFAAIYDPLNPVIDTS NDNRGQIDDALGGRAYYQGRVELDIPLGTGAKELGLRPSIFLDVGSVFSVKRPTLTTLADFRDPADGLTKFLCRNATTGV TQFATNTPDASGAPTGQFTTCAAGFSALAPFEERFFGDTWMPRVAIGAGVNWNSPFGPFRIDFAYALRKEEGDDTKRFSF NVGTQF
Specific function: Unknown
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=860, Percent_Identity=23.953488372093, Blast_Score=236, Evalue=4e-63, Organism=Drosophila melanogaster, GI45552629, Length=355, Percent_Identity=24.2253521126761, Blast_Score=70, Evalue=9e-12,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 99036; Mature: 98904
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASHKILGRTQLSVALLAGTMLSAPLMAQDVAPPTVPAPTVPAPAPEAAPTATTIQSITV CCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE TGNQRLEAQTILSYLRLRVGQTYDRATLDQALKDLAATELFKDFQITDNNGALQIQVTEN CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEECCC PVINRVILEGNKRLKEDKIRPEIKLAPRQIFTRSKVRADVARIIELYKRQGRFAATVEPK CCEEEEEECCCCHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCE MVSLDQNRVDVVFEINEGPKSKVRQINIIGNEKFSDGDLKDEMATKETGLLTILSSNTSY EEECCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCEEEEEECCCCC DPDRLAYDQQKLRLFYLTNGYADFRVISAVAELTSNKQDFIITYVVEEGERYKFGNVDVK CHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEECCCCHH SELRDFQPEMLKRLLPMKSGDWYDAKLVEDTVESLSETAGLFGYAFADINPEFRRNPDDR HHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCC TMDITFNVAESPRTYVERIDVNGNTLTHDKVVRREFRLNEGDAFNSFGVKRTENRINSLG EEEEEEEECCCCCEEHEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH YFQENLEIERKEGSTPDRIILETNVEEKPTGELSLSAGFSSIENFLLQASIRQRNFRGLG HHHHCCEEEECCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH QQLQASVNYSSYSKSIELGFTEPYLFDRNISVGGSVYRRDLNSFNFIDNDRRTTFEQVTT HHHHHHCCHHHCCCEEEECCCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHC GFQINAGVPLTEFLSFFGRYSLNYDDVTLDRSIYFFGDQCDPLVAGRYLCDAIGKRTTSL CEEEECCCCHHHHHHHHHCCCCCCCCEEECCEEEEECCCCCHHHHHHHHHHHHCCHHHEE VGFTLAYDDRDNRIRPTRGQSASISQDFAGLGGSVKYVRTRLAGSKHFNLGSRFILNLSA EEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEC EGGYIHPFGSAPTPTSDKVRLTDRFFLGEPQMRGFDIRGVGPRVIRFAAIYDPLNPVIDT CCCEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCCHHHEEEEHHHCCCCCCEEC SNDNRGQIDDALGGRAYYQGRVELDIPLGTGAKELGLRPSIFLDVGSVFSVKRPTLTTLA CCCCCCCCHHCCCCCEEEECEEEEEEECCCCHHHHCCCCEEEEECCCHHCCCCCCHHHHH DFRDPADGLTKFLCRNATTGVTQFATNTPDASGAPTGQFTTCAAGFSALAPFEERFFGDT HCCCCHHHHHHHHHCCCCCCHHEEECCCCCCCCCCCCCCHHHHHCHHHHCCHHHHHCCCC WMPRVAIGAGVNWNSPFGPFRIDFAYALRKEEGDDTKRFSFNVGTQF CCCCEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCC >Mature Secondary Structure ASHKILGRTQLSVALLAGTMLSAPLMAQDVAPPTVPAPTVPAPAPEAAPTATTIQSITV CCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE TGNQRLEAQTILSYLRLRVGQTYDRATLDQALKDLAATELFKDFQITDNNGALQIQVTEN CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEECCC PVINRVILEGNKRLKEDKIRPEIKLAPRQIFTRSKVRADVARIIELYKRQGRFAATVEPK CCEEEEEECCCCHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCE MVSLDQNRVDVVFEINEGPKSKVRQINIIGNEKFSDGDLKDEMATKETGLLTILSSNTSY EEECCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCEEEEEECCCCC DPDRLAYDQQKLRLFYLTNGYADFRVISAVAELTSNKQDFIITYVVEEGERYKFGNVDVK CHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEECCCCHH SELRDFQPEMLKRLLPMKSGDWYDAKLVEDTVESLSETAGLFGYAFADINPEFRRNPDDR HHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCC TMDITFNVAESPRTYVERIDVNGNTLTHDKVVRREFRLNEGDAFNSFGVKRTENRINSLG EEEEEEEECCCCCEEHEEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH YFQENLEIERKEGSTPDRIILETNVEEKPTGELSLSAGFSSIENFLLQASIRQRNFRGLG HHHHCCEEEECCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH QQLQASVNYSSYSKSIELGFTEPYLFDRNISVGGSVYRRDLNSFNFIDNDRRTTFEQVTT HHHHHHCCHHHCCCEEEECCCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHC GFQINAGVPLTEFLSFFGRYSLNYDDVTLDRSIYFFGDQCDPLVAGRYLCDAIGKRTTSL CEEEECCCCHHHHHHHHHCCCCCCCCEEECCEEEEECCCCCHHHHHHHHHHHHCCHHHEE VGFTLAYDDRDNRIRPTRGQSASISQDFAGLGGSVKYVRTRLAGSKHFNLGSRFILNLSA EEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEC EGGYIHPFGSAPTPTSDKVRLTDRFFLGEPQMRGFDIRGVGPRVIRFAAIYDPLNPVIDT CCCEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCCHHHEEEEHHHCCCCCCEEC SNDNRGQIDDALGGRAYYQGRVELDIPLGTGAKELGLRPSIFLDVGSVFSVKRPTLTTLA CCCCCCCCHHCCCCCEEEECEEEEEEECCCCHHHHCCCCEEEEECCCHHCCCCCCHHHHH DFRDPADGLTKFLCRNATTGVTQFATNTPDASGAPTGQFTTCAAGFSALAPFEERFFGDT HCCCCHHHHHHHHHCCCCCCHHEEECCCCCCCCCCCCCCHHHHHCHHHHCCHHHHHCCCC WMPRVAIGAGVNWNSPFGPFRIDFAYALRKEEGDDTKRFSFNVGTQF CCCCEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]