Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487358

Identifier: 103487358

GI number: 103487358

Start: 1969871

End: 1971496

Strand: Reverse

Name: 103487358

Synonym: Sala_1874

Alternate gene names: NA

Gene position: 1971496-1969871 (Counterclockwise)

Preceding gene: 103487359

Following gene: 103487357

Centisome position: 58.94

GC content: 71.34

Gene sequence:

>1626_bases
ATGCGGCAAGCGATATTGACGGCGAAGCCGGCGCGCACACGGCGTAACGTGGCAGCGCTGGGCGCGTTGTTGTTGGGGAC
TCTCGGCATTCCGTCGGTGCATGCGATGCAGGCGGCCGCGCCCGACGCGGCAACGCGCGCGGCGATGGAAAAGCGCAGCG
CCGCGCGCGCGCTGCTTTCCGCGTCGCTGGCACGGCTGGCGTCGAACAATAATGATGCGACCGCGCTGCTCGACGCCGGG
CGTGCGTCGATCTCGCTCGAGGATTATCGCGCCGCCCTCGGCTTTCTGCTCCGCGCCGAACAGGCCAGGCCGCGCGACGG
CGCGGTCAAGGCGGCGCTCGGCTCGGCGATGGTGCATTCCGAAAATCCGACGCGCGCGCTCGACTATTTCGGCGAGGCGC
AGCTTCTGGGCGCACCCGAACGGCTGTTCCTCGCCGACCGCGGGCTCGCGCGCGACCTGCTCGGACAACAGGATGCGGCA
CAGCGCGATTATCAGCTCGCGCTGTCGATCGCGCCCGATGCCGAACTGACCCGGCGTTATGCCCTGTCGCTGGGGATCAG
CGGCGACCCCGATCGCGCGATCCAGCTGCTGACGCCGCAATTGCGCGCGCAGGATCGCGGCGCGTGGCGGCTTCGCGCGA
TGATCCTGGCGATGAACGGCCGCGACAGGGAGGCAAGCGAGATCGTCAACGCGACGATGCCCGCGCCGATGGCAGCCAAT
ATCCTGCCCTATCTGGTGCAGATGGACCGGCTCAATCCCGCGCAAAAGGCTGCCGCGGCACATTTCGGTCGCTTTCCGAG
CGGCCAGCCCGCCGCGGCGCAGCGGCCGGTTCAGGTGGCGACCGCGACGCCGACGCCCCGGCCGGCGCCCGCTCCGCGCC
GCAGCGCGCCGACCTCCACGCCCGCGGCCGCCGCTCCGGTCCCGAAGCCGCCGCCGCCGCCCGCCGCGATGCCGCCCAGC
CGCCCGCGCGCCGAAACGCCCGTGCCAGCCTCTTCCCCGCCCGCAAATCCCCCGACGTCGGCGGTGAAAGCGCCGGCGGG
GCCGGGCTTCTCGATCGCCGACATCGCGCCCGCACCGCCCGCCGCGGCCCCGGCGGCGCCGCGGCCCGCTGCGCAGGCAC
CCGCCGCCGCGCCGCTCGCCTCGCTCGCCGACATCGTTGGGTCGATCGAGATACCCCCCGAGGAACTCGCGCGCCCCGAC
GATGCGATCGGCGCCGAGACGCTCGCCAAGCTGCTCGATGACAAGCGCAAGGCCGAGGCTGCCGAAGCGGCAAAGCGCGA
GAAGGAAGAAGCCGCCGCCAGGGCAAGGGCCGAGGCCGACGCCAGGGCGAAAGAAGAAGCCGCGAAGAAAAAGGCGCATC
CCGCGCGTATCTGGGTGCAGATCGCGACCGGCGCCAACCCGAAGGCGCTCGCTTTCGACTATAACCGCTTCGCCAAGCGC
AATGCGGCGCTGTTCAAGGGCAAGGCGGGCGCGACCGCCGAATGGGGTCAGACCCGGCGCCTGCTCGTCGGCCCGTTCGC
GAACCGCAAGGCGGCGCAGGACTGGCTCGCCGATTACAAAAAGGCCGAAGGCGACGGTTTTCTTTTCAGCTGCGAGGTCG
GCGAGATCGTCGAACCGCTGCAGTGA

Upstream 100 bases:

>100_bases
TCGACATTCCGCGTTTCCTGGGGCGGCAGAACAACCAGTAACAGGGCTTTCGGACGGCCGACCGCCGGGCTTGGCAGGCC
GGAAACGGGATGATTTGCCC

Downstream 100 bases:

>100_bases
GCGTTGCCCGCTGCGCCAGCGACCCGGCGCAGAGCCGCGGGCGCCGCCATGCCGAATCGGGCCGCGTCGTGCGCGGGCCG
CGCGATGCGTTCCAGCGCGA

Product: sporulation related

Products: NA

Alternate protein names: Sporulation Domain-Containing Protein; Sporulation Domain Protein

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MRQAILTAKPARTRRNVAALGALLLGTLGIPSVHAMQAAAPDAATRAAMEKRSAARALLSASLARLASNNNDATALLDAG
RASISLEDYRAALGFLLRAEQARPRDGAVKAALGSAMVHSENPTRALDYFGEAQLLGAPERLFLADRGLARDLLGQQDAA
QRDYQLALSIAPDAELTRRYALSLGISGDPDRAIQLLTPQLRAQDRGAWRLRAMILAMNGRDREASEIVNATMPAPMAAN
ILPYLVQMDRLNPAQKAAAAHFGRFPSGQPAAAQRPVQVATATPTPRPAPAPRRSAPTSTPAAAAPVPKPPPPPAAMPPS
RPRAETPVPASSPPANPPTSAVKAPAGPGFSIADIAPAPPAAAPAAPRPAAQAPAAAPLASLADIVGSIEIPPEELARPD
DAIGAETLAKLLDDKRKAEAAEAAKREKEEAAARARAEADARAKEEAAKKKAHPARIWVQIATGANPKALAFDYNRFAKR
NAALFKGKAGATAEWGQTRRLLVGPFANRKAAQDWLADYKKAEGDGFLFSCEVGEIVEPLQ

Sequences:

>Translated_541_residues
MRQAILTAKPARTRRNVAALGALLLGTLGIPSVHAMQAAAPDAATRAAMEKRSAARALLSASLARLASNNNDATALLDAG
RASISLEDYRAALGFLLRAEQARPRDGAVKAALGSAMVHSENPTRALDYFGEAQLLGAPERLFLADRGLARDLLGQQDAA
QRDYQLALSIAPDAELTRRYALSLGISGDPDRAIQLLTPQLRAQDRGAWRLRAMILAMNGRDREASEIVNATMPAPMAAN
ILPYLVQMDRLNPAQKAAAAHFGRFPSGQPAAAQRPVQVATATPTPRPAPAPRRSAPTSTPAAAAPVPKPPPPPAAMPPS
RPRAETPVPASSPPANPPTSAVKAPAGPGFSIADIAPAPPAAAPAAPRPAAQAPAAAPLASLADIVGSIEIPPEELARPD
DAIGAETLAKLLDDKRKAEAAEAAKREKEEAAARARAEADARAKEEAAKKKAHPARIWVQIATGANPKALAFDYNRFAKR
NAALFKGKAGATAEWGQTRRLLVGPFANRKAAQDWLADYKKAEGDGFLFSCEVGEIVEPLQ
>Mature_541_residues
MRQAILTAKPARTRRNVAALGALLLGTLGIPSVHAMQAAAPDAATRAAMEKRSAARALLSASLARLASNNNDATALLDAG
RASISLEDYRAALGFLLRAEQARPRDGAVKAALGSAMVHSENPTRALDYFGEAQLLGAPERLFLADRGLARDLLGQQDAA
QRDYQLALSIAPDAELTRRYALSLGISGDPDRAIQLLTPQLRAQDRGAWRLRAMILAMNGRDREASEIVNATMPAPMAAN
ILPYLVQMDRLNPAQKAAAAHFGRFPSGQPAAAQRPVQVATATPTPRPAPAPRRSAPTSTPAAAAPVPKPPPPPAAMPPS
RPRAETPVPASSPPANPPTSAVKAPAGPGFSIADIAPAPPAAAPAAPRPAAQAPAAAPLASLADIVGSIEIPPEELARPD
DAIGAETLAKLLDDKRKAEAAEAAKREKEEAAARARAEADARAKEEAAKKKAHPARIWVQIATGANPKALAFDYNRFAKR
NAALFKGKAGATAEWGQTRRLLVGPFANRKAAQDWLADYKKAEGDGFLFSCEVGEIVEPLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56673; Mature: 56673

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQAILTAKPARTRRNVAALGALLLGTLGIPSVHAMQAAAPDAATRAAMEKRSAARALLS
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ASLARLASNNNDATALLDAGRASISLEDYRAALGFLLRAEQARPRDGAVKAALGSAMVHS
HHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
ENPTRALDYFGEAQLLGAPERLFLADRGLARDLLGQQDAAQRDYQLALSIAPDAELTRRY
CCCCHHHHHCCCHHCCCCCHHHHHHCCCHHHHHHCCCHHHCCCEEEEEEECCCHHHHHHH
ALSLGISGDPDRAIQLLTPQLRAQDRGAWRLRAMILAMNGRDREASEIVNATMPAPMAAN
HHEECCCCCHHHHHHHHCHHHHHCCCCHHEEEEEEEEECCCCHHHHHHHHHCCCCCHHHH
ILPYLVQMDRLNPAQKAAAAHFGRFPSGQPAAAQRPVQVATATPTPRPAPAPRRSAPTST
HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
PAAAAPVPKPPPPPAAMPPSRPRAETPVPASSPPANPPTSAVKAPAGPGFSIADIAPAPP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
AAAPAAPRPAAQAPAAAPLASLADIVGSIEIPPEELARPDDAIGAETLAKLLDDKRKAEA
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AEAAKREKEEAAARARAEADARAKEEAAKKKAHPARIWVQIATGANPKALAFDYNRFAKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECHHHHHHH
NAALFKGKAGATAEWGQTRRLLVGPFANRKAAQDWLADYKKAEGDGFLFSCEVGEIVEPL
CHHHEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCC
Q
C
>Mature Secondary Structure
MRQAILTAKPARTRRNVAALGALLLGTLGIPSVHAMQAAAPDAATRAAMEKRSAARALLS
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ASLARLASNNNDATALLDAGRASISLEDYRAALGFLLRAEQARPRDGAVKAALGSAMVHS
HHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
ENPTRALDYFGEAQLLGAPERLFLADRGLARDLLGQQDAAQRDYQLALSIAPDAELTRRY
CCCCHHHHHCCCHHCCCCCHHHHHHCCCHHHHHHCCCHHHCCCEEEEEEECCCHHHHHHH
ALSLGISGDPDRAIQLLTPQLRAQDRGAWRLRAMILAMNGRDREASEIVNATMPAPMAAN
HHEECCCCCHHHHHHHHCHHHHHCCCCHHEEEEEEEEECCCCHHHHHHHHHCCCCCHHHH
ILPYLVQMDRLNPAQKAAAAHFGRFPSGQPAAAQRPVQVATATPTPRPAPAPRRSAPTST
HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
PAAAAPVPKPPPPPAAMPPSRPRAETPVPASSPPANPPTSAVKAPAGPGFSIADIAPAPP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
AAAPAAPRPAAQAPAAAPLASLADIVGSIEIPPEELARPDDAIGAETLAKLLDDKRKAEA
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AEAAKREKEEAAARARAEADARAKEEAAKKKAHPARIWVQIATGANPKALAFDYNRFAKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECHHHHHHH
NAALFKGKAGATAEWGQTRRLLVGPFANRKAAQDWLADYKKAEGDGFLFSCEVGEIVEPL
CHHHEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA