| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487358
Identifier: 103487358
GI number: 103487358
Start: 1969871
End: 1971496
Strand: Reverse
Name: 103487358
Synonym: Sala_1874
Alternate gene names: NA
Gene position: 1971496-1969871 (Counterclockwise)
Preceding gene: 103487359
Following gene: 103487357
Centisome position: 58.94
GC content: 71.34
Gene sequence:
>1626_bases ATGCGGCAAGCGATATTGACGGCGAAGCCGGCGCGCACACGGCGTAACGTGGCAGCGCTGGGCGCGTTGTTGTTGGGGAC TCTCGGCATTCCGTCGGTGCATGCGATGCAGGCGGCCGCGCCCGACGCGGCAACGCGCGCGGCGATGGAAAAGCGCAGCG CCGCGCGCGCGCTGCTTTCCGCGTCGCTGGCACGGCTGGCGTCGAACAATAATGATGCGACCGCGCTGCTCGACGCCGGG CGTGCGTCGATCTCGCTCGAGGATTATCGCGCCGCCCTCGGCTTTCTGCTCCGCGCCGAACAGGCCAGGCCGCGCGACGG CGCGGTCAAGGCGGCGCTCGGCTCGGCGATGGTGCATTCCGAAAATCCGACGCGCGCGCTCGACTATTTCGGCGAGGCGC AGCTTCTGGGCGCACCCGAACGGCTGTTCCTCGCCGACCGCGGGCTCGCGCGCGACCTGCTCGGACAACAGGATGCGGCA CAGCGCGATTATCAGCTCGCGCTGTCGATCGCGCCCGATGCCGAACTGACCCGGCGTTATGCCCTGTCGCTGGGGATCAG CGGCGACCCCGATCGCGCGATCCAGCTGCTGACGCCGCAATTGCGCGCGCAGGATCGCGGCGCGTGGCGGCTTCGCGCGA TGATCCTGGCGATGAACGGCCGCGACAGGGAGGCAAGCGAGATCGTCAACGCGACGATGCCCGCGCCGATGGCAGCCAAT ATCCTGCCCTATCTGGTGCAGATGGACCGGCTCAATCCCGCGCAAAAGGCTGCCGCGGCACATTTCGGTCGCTTTCCGAG CGGCCAGCCCGCCGCGGCGCAGCGGCCGGTTCAGGTGGCGACCGCGACGCCGACGCCCCGGCCGGCGCCCGCTCCGCGCC GCAGCGCGCCGACCTCCACGCCCGCGGCCGCCGCTCCGGTCCCGAAGCCGCCGCCGCCGCCCGCCGCGATGCCGCCCAGC CGCCCGCGCGCCGAAACGCCCGTGCCAGCCTCTTCCCCGCCCGCAAATCCCCCGACGTCGGCGGTGAAAGCGCCGGCGGG GCCGGGCTTCTCGATCGCCGACATCGCGCCCGCACCGCCCGCCGCGGCCCCGGCGGCGCCGCGGCCCGCTGCGCAGGCAC CCGCCGCCGCGCCGCTCGCCTCGCTCGCCGACATCGTTGGGTCGATCGAGATACCCCCCGAGGAACTCGCGCGCCCCGAC GATGCGATCGGCGCCGAGACGCTCGCCAAGCTGCTCGATGACAAGCGCAAGGCCGAGGCTGCCGAAGCGGCAAAGCGCGA GAAGGAAGAAGCCGCCGCCAGGGCAAGGGCCGAGGCCGACGCCAGGGCGAAAGAAGAAGCCGCGAAGAAAAAGGCGCATC CCGCGCGTATCTGGGTGCAGATCGCGACCGGCGCCAACCCGAAGGCGCTCGCTTTCGACTATAACCGCTTCGCCAAGCGC AATGCGGCGCTGTTCAAGGGCAAGGCGGGCGCGACCGCCGAATGGGGTCAGACCCGGCGCCTGCTCGTCGGCCCGTTCGC GAACCGCAAGGCGGCGCAGGACTGGCTCGCCGATTACAAAAAGGCCGAAGGCGACGGTTTTCTTTTCAGCTGCGAGGTCG GCGAGATCGTCGAACCGCTGCAGTGA
Upstream 100 bases:
>100_bases TCGACATTCCGCGTTTCCTGGGGCGGCAGAACAACCAGTAACAGGGCTTTCGGACGGCCGACCGCCGGGCTTGGCAGGCC GGAAACGGGATGATTTGCCC
Downstream 100 bases:
>100_bases GCGTTGCCCGCTGCGCCAGCGACCCGGCGCAGAGCCGCGGGCGCCGCCATGCCGAATCGGGCCGCGTCGTGCGCGGGCCG CGCGATGCGTTCCAGCGCGA
Product: sporulation related
Products: NA
Alternate protein names: Sporulation Domain-Containing Protein; Sporulation Domain Protein
Number of amino acids: Translated: 541; Mature: 541
Protein sequence:
>541_residues MRQAILTAKPARTRRNVAALGALLLGTLGIPSVHAMQAAAPDAATRAAMEKRSAARALLSASLARLASNNNDATALLDAG RASISLEDYRAALGFLLRAEQARPRDGAVKAALGSAMVHSENPTRALDYFGEAQLLGAPERLFLADRGLARDLLGQQDAA QRDYQLALSIAPDAELTRRYALSLGISGDPDRAIQLLTPQLRAQDRGAWRLRAMILAMNGRDREASEIVNATMPAPMAAN ILPYLVQMDRLNPAQKAAAAHFGRFPSGQPAAAQRPVQVATATPTPRPAPAPRRSAPTSTPAAAAPVPKPPPPPAAMPPS RPRAETPVPASSPPANPPTSAVKAPAGPGFSIADIAPAPPAAAPAAPRPAAQAPAAAPLASLADIVGSIEIPPEELARPD DAIGAETLAKLLDDKRKAEAAEAAKREKEEAAARARAEADARAKEEAAKKKAHPARIWVQIATGANPKALAFDYNRFAKR NAALFKGKAGATAEWGQTRRLLVGPFANRKAAQDWLADYKKAEGDGFLFSCEVGEIVEPLQ
Sequences:
>Translated_541_residues MRQAILTAKPARTRRNVAALGALLLGTLGIPSVHAMQAAAPDAATRAAMEKRSAARALLSASLARLASNNNDATALLDAG RASISLEDYRAALGFLLRAEQARPRDGAVKAALGSAMVHSENPTRALDYFGEAQLLGAPERLFLADRGLARDLLGQQDAA QRDYQLALSIAPDAELTRRYALSLGISGDPDRAIQLLTPQLRAQDRGAWRLRAMILAMNGRDREASEIVNATMPAPMAAN ILPYLVQMDRLNPAQKAAAAHFGRFPSGQPAAAQRPVQVATATPTPRPAPAPRRSAPTSTPAAAAPVPKPPPPPAAMPPS RPRAETPVPASSPPANPPTSAVKAPAGPGFSIADIAPAPPAAAPAAPRPAAQAPAAAPLASLADIVGSIEIPPEELARPD DAIGAETLAKLLDDKRKAEAAEAAKREKEEAAARARAEADARAKEEAAKKKAHPARIWVQIATGANPKALAFDYNRFAKR NAALFKGKAGATAEWGQTRRLLVGPFANRKAAQDWLADYKKAEGDGFLFSCEVGEIVEPLQ >Mature_541_residues MRQAILTAKPARTRRNVAALGALLLGTLGIPSVHAMQAAAPDAATRAAMEKRSAARALLSASLARLASNNNDATALLDAG RASISLEDYRAALGFLLRAEQARPRDGAVKAALGSAMVHSENPTRALDYFGEAQLLGAPERLFLADRGLARDLLGQQDAA QRDYQLALSIAPDAELTRRYALSLGISGDPDRAIQLLTPQLRAQDRGAWRLRAMILAMNGRDREASEIVNATMPAPMAAN ILPYLVQMDRLNPAQKAAAAHFGRFPSGQPAAAQRPVQVATATPTPRPAPAPRRSAPTSTPAAAAPVPKPPPPPAAMPPS RPRAETPVPASSPPANPPTSAVKAPAGPGFSIADIAPAPPAAAPAAPRPAAQAPAAAPLASLADIVGSIEIPPEELARPD DAIGAETLAKLLDDKRKAEAAEAAKREKEEAAARARAEADARAKEEAAKKKAHPARIWVQIATGANPKALAFDYNRFAKR NAALFKGKAGATAEWGQTRRLLVGPFANRKAAQDWLADYKKAEGDGFLFSCEVGEIVEPLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56673; Mature: 56673
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQAILTAKPARTRRNVAALGALLLGTLGIPSVHAMQAAAPDAATRAAMEKRSAARALLS CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH ASLARLASNNNDATALLDAGRASISLEDYRAALGFLLRAEQARPRDGAVKAALGSAMVHS HHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC ENPTRALDYFGEAQLLGAPERLFLADRGLARDLLGQQDAAQRDYQLALSIAPDAELTRRY CCCCHHHHHCCCHHCCCCCHHHHHHCCCHHHHHHCCCHHHCCCEEEEEEECCCHHHHHHH ALSLGISGDPDRAIQLLTPQLRAQDRGAWRLRAMILAMNGRDREASEIVNATMPAPMAAN HHEECCCCCHHHHHHHHCHHHHHCCCCHHEEEEEEEEECCCCHHHHHHHHHCCCCCHHHH ILPYLVQMDRLNPAQKAAAAHFGRFPSGQPAAAQRPVQVATATPTPRPAPAPRRSAPTST HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCC PAAAAPVPKPPPPPAAMPPSRPRAETPVPASSPPANPPTSAVKAPAGPGFSIADIAPAPP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC AAAPAAPRPAAQAPAAAPLASLADIVGSIEIPPEELARPDDAIGAETLAKLLDDKRKAEA CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH AEAAKREKEEAAARARAEADARAKEEAAKKKAHPARIWVQIATGANPKALAFDYNRFAKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECHHHHHHH NAALFKGKAGATAEWGQTRRLLVGPFANRKAAQDWLADYKKAEGDGFLFSCEVGEIVEPL CHHHEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCC Q C >Mature Secondary Structure MRQAILTAKPARTRRNVAALGALLLGTLGIPSVHAMQAAAPDAATRAAMEKRSAARALLS CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH ASLARLASNNNDATALLDAGRASISLEDYRAALGFLLRAEQARPRDGAVKAALGSAMVHS HHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC ENPTRALDYFGEAQLLGAPERLFLADRGLARDLLGQQDAAQRDYQLALSIAPDAELTRRY CCCCHHHHHCCCHHCCCCCHHHHHHCCCHHHHHHCCCHHHCCCEEEEEEECCCHHHHHHH ALSLGISGDPDRAIQLLTPQLRAQDRGAWRLRAMILAMNGRDREASEIVNATMPAPMAAN HHEECCCCCHHHHHHHHCHHHHHCCCCHHEEEEEEEEECCCCHHHHHHHHHCCCCCHHHH ILPYLVQMDRLNPAQKAAAAHFGRFPSGQPAAAQRPVQVATATPTPRPAPAPRRSAPTST HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCC PAAAAPVPKPPPPPAAMPPSRPRAETPVPASSPPANPPTSAVKAPAGPGFSIADIAPAPP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC AAAPAAPRPAAQAPAAAPLASLADIVGSIEIPPEELARPDDAIGAETLAKLLDDKRKAEA CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH AEAAKREKEEAAARARAEADARAKEEAAKKKAHPARIWVQIATGANPKALAFDYNRFAKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECHHHHHHH NAALFKGKAGATAEWGQTRRLLVGPFANRKAAQDWLADYKKAEGDGFLFSCEVGEIVEPL CHHHEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCC Q C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA