| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487313
Identifier: 103487313
GI number: 103487313
Start: 1924391
End: 1925137
Strand: Reverse
Name: 103487313
Synonym: Sala_1829
Alternate gene names: NA
Gene position: 1925137-1924391 (Counterclockwise)
Preceding gene: 103487318
Following gene: 103487312
Centisome position: 57.55
GC content: 68.54
Gene sequence:
>747_bases ATGCGAAACTGGACGATGGCGGCGCTGCCGCTGATGCTTGCGATGTCCGTGACGGCGTGTGGCGCCGGGGTGACGGGCGA GAGCAAGGATGGCAAACGCACGGTCGAGGCGGGGCCGACGAAATCGCGGGGCTTCGATCTGACCGGCTTTACCGGCGTCA AGGTCACGGGCCCCGATGATGTGACGATCCGCCGCGGCGACGCTTTCTCGATCGTCGCGCGCGGACCGCAGGCGGTGATC GACGAGTTGGAAATCGAACTCGACGGCGACATGCTGTCGATCGGCCGGAAAGACTCGATGCTTCGGTTCGACGGGGATCA GACGGTCGAGGTGACGGTCGTGATGCCCGCGCTCCGCGCGGTGCGCCTGACGGGTTCGGGCGCGATCGACGCCGATGCGA TCGAGGGCGACGCGGTCGAGGCGGTGGTGACGGGCTCGGGCGACCTCAGGGTTGCGGCGATGAACGGCAAGCGCGCCAAG CTGACGATCACCGGATCGGGCGATCTGGAGGTGGGCGGCGGCACGATCGGCGCGGGCAATTACGACGTGACGGGATCGGG CAGCATCGCGGCGAGCGATCTGGCGGCCTCGACGCTCGACGTGTCGATCGCCGGATCGGGCGACGTCGACGCGCGCGCGA GCGAGAGCGCCGACATTTCGATCCTGGGGTCGGGCGATGCGACGATCGGCGGTGGCGCCAAATGTTCGACGCGCGCGCTG GGGTCGGGCGACGCGATCTGCAAATGA
Upstream 100 bases:
>100_bases CGGCGCGCTCTGGCGCACGAAGGTGGCGACAAGATGGCGGCGCCTCTGGACAGGCGGACAGGATGTGTGTTATTAATATA ATACACAAAGGAGATTCTCG
Downstream 100 bases:
>100_bases CGCGAGGATGACGCGGCTATGGCGCCGCCCCGCCCGACGCGGTAGGATGGCGCCATGACCAGCCTGCCGCATTGGGCCGC ATTGGCGGCAAGCACCCTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MRNWTMAALPLMLAMSVTACGAGVTGESKDGKRTVEAGPTKSRGFDLTGFTGVKVTGPDDVTIRRGDAFSIVARGPQAVI DELEIELDGDMLSIGRKDSMLRFDGDQTVEVTVVMPALRAVRLTGSGAIDADAIEGDAVEAVVTGSGDLRVAAMNGKRAK LTITGSGDLEVGGGTIGAGNYDVTGSGSIAASDLAASTLDVSIAGSGDVDARASESADISILGSGDATIGGGAKCSTRAL GSGDAICK
Sequences:
>Translated_248_residues MRNWTMAALPLMLAMSVTACGAGVTGESKDGKRTVEAGPTKSRGFDLTGFTGVKVTGPDDVTIRRGDAFSIVARGPQAVI DELEIELDGDMLSIGRKDSMLRFDGDQTVEVTVVMPALRAVRLTGSGAIDADAIEGDAVEAVVTGSGDLRVAAMNGKRAK LTITGSGDLEVGGGTIGAGNYDVTGSGSIAASDLAASTLDVSIAGSGDVDARASESADISILGSGDATIGGGAKCSTRAL GSGDAICK >Mature_248_residues MRNWTMAALPLMLAMSVTACGAGVTGESKDGKRTVEAGPTKSRGFDLTGFTGVKVTGPDDVTIRRGDAFSIVARGPQAVI DELEIELDGDMLSIGRKDSMLRFDGDQTVEVTVVMPALRAVRLTGSGAIDADAIEGDAVEAVVTGSGDLRVAAMNGKRAK LTITGSGDLEVGGGTIGAGNYDVTGSGSIAASDLAASTLDVSIAGSGDVDARASESADISILGSGDATIGGGAKCSTRAL GSGDAICK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24789; Mature: 24789
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNWTMAALPLMLAMSVTACGAGVTGESKDGKRTVEAGPTKSRGFDLTGFTGVKVTGPDD CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCEEEEECCCC VTIRRGDAFSIVARGPQAVIDELEIELDGDMLSIGRKDSMLRFDGDQTVEVTVVMPALRA EEEECCCEEEEEECCHHHHHEEEEEEECCCEEECCCCCCEEEECCCCEEEEEEEECCCEE VRLTGSGAIDADAIEGDAVEAVVTGSGDLRVAAMNGKRAKLTITGSGDLEVGGGTIGAGN EEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCEEECCEEECCCC YDVTGSGSIAASDLAASTLDVSIAGSGDVDARASESADISILGSGDATIGGGAKCSTRAL EEECCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEECCCCCCCEEEC GSGDAICK CCCCCCCC >Mature Secondary Structure MRNWTMAALPLMLAMSVTACGAGVTGESKDGKRTVEAGPTKSRGFDLTGFTGVKVTGPDD CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCEEEEECCCC VTIRRGDAFSIVARGPQAVIDELEIELDGDMLSIGRKDSMLRFDGDQTVEVTVVMPALRA EEEECCCEEEEEECCHHHHHEEEEEEECCCEEECCCCCCEEEECCCCEEEEEEEECCCEE VRLTGSGAIDADAIEGDAVEAVVTGSGDLRVAAMNGKRAKLTITGSGDLEVGGGTIGAGN EEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCEEECCEEECCCC YDVTGSGSIAASDLAASTLDVSIAGSGDVDARASESADISILGSGDATIGGGAKCSTRAL EEECCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEECCCCCCCEEEC GSGDAICK CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA