| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487170
Identifier: 103487170
GI number: 103487170
Start: 1774222
End: 1774794
Strand: Reverse
Name: 103487170
Synonym: Sala_1685
Alternate gene names: NA
Gene position: 1774794-1774222 (Counterclockwise)
Preceding gene: 103487171
Following gene: 103487169
Centisome position: 53.06
GC content: 65.27
Gene sequence:
>573_bases GTGGCAGAGTCAAAAACATCCACTTCGGTGGCAGCGCGCCTCGACGCGATCGAGGCGCAGATCAAGCAGATACTCGAAGC GCTTCACGGAGCGGGCGGAATGTCCGCACCGTCGACAACGATCGAGCTCACCGGCGAGGAACTCGACAAGATCGGCGATG CGCTGGAAGACCTCGACAGCCGCCTGACCGACCGACAGCGGCTCTATTTTCTGGGCATATTGGGGGCGGCCGCGCACCAT TTCCAGCAGGTGCTGGCGACCGAAGGGCCGTCGATCGAGAATATCCGCACGATCAAGGTCGCCAACGCGGCGCGGATCCG CGACGTCAAGCTGTCCGACGCATTCCAGGGGCTTACCAGGGTCGAGCAGGGCCGACTCGGCAGCATTCTTTCGCCGGGAG GCGACGTGATGGATTCGGTCGGAGTGGGCGTTGGCGTTGCCTGCGTCGGGGTCGATTGGTCGAAGGATCTCGCGACCGAC CAGCTTGGCGGATGGCGCACGAACCCCGCCTTCGGCGGCGCCGTCGTCAATCCGGGACCGCTGGGCGGCCTGCCCGGAGG TTTCGGGCGCTAA
Upstream 100 bases:
>100_bases CGATTAACCATGTCCGGAAACCCGGAAGCAATCTTTATTACCGATTGTTAGCAAAACAAAAAATGCCTGGGTCGCGTCCG TTGCTTGCAGGAGACGACAC
Downstream 100 bases:
>100_bases ACCGAAAGGTTCGACATGAATGCCCCCGTCAAGAGGCCGCGCCACCGCGCGGTCGCCGCGGAGGAGGCTGCGCCCGAAAC GAAGGAAGCGGCGTCGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MAESKTSTSVAARLDAIEAQIKQILEALHGAGGMSAPSTTIELTGEELDKIGDALEDLDSRLTDRQRLYFLGILGAAAHH FQQVLATEGPSIENIRTIKVANAARIRDVKLSDAFQGLTRVEQGRLGSILSPGGDVMDSVGVGVGVACVGVDWSKDLATD QLGGWRTNPAFGGAVVNPGPLGGLPGGFGR
Sequences:
>Translated_190_residues MAESKTSTSVAARLDAIEAQIKQILEALHGAGGMSAPSTTIELTGEELDKIGDALEDLDSRLTDRQRLYFLGILGAAAHH FQQVLATEGPSIENIRTIKVANAARIRDVKLSDAFQGLTRVEQGRLGSILSPGGDVMDSVGVGVGVACVGVDWSKDLATD QLGGWRTNPAFGGAVVNPGPLGGLPGGFGR >Mature_189_residues AESKTSTSVAARLDAIEAQIKQILEALHGAGGMSAPSTTIELTGEELDKIGDALEDLDSRLTDRQRLYFLGILGAAAHHF QQVLATEGPSIENIRTIKVANAARIRDVKLSDAFQGLTRVEQGRLGSILSPGGDVMDSVGVGVGVACVGVDWSKDLATDQ LGGWRTNPAFGGAVVNPGPLGGLPGGFGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19720; Mature: 19588
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAESKTSTSVAARLDAIEAQIKQILEALHGAGGMSAPSTTIELTGEELDKIGDALEDLDS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHH RLTDRQRLYFLGILGAAAHHFQQVLATEGPSIENIRTIKVANAARIRDVKLSDAFQGLTR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCHHHHHHHHHHH VEQGRLGSILSPGGDVMDSVGVGVGVACVGVDWSKDLATDQLGGWRTNPAFGGAVVNPGP HHCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCC LGGLPGGFGR CCCCCCCCCC >Mature Secondary Structure AESKTSTSVAARLDAIEAQIKQILEALHGAGGMSAPSTTIELTGEELDKIGDALEDLDS CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHH RLTDRQRLYFLGILGAAAHHFQQVLATEGPSIENIRTIKVANAARIRDVKLSDAFQGLTR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCHHHHHHHHHHH VEQGRLGSILSPGGDVMDSVGVGVGVACVGVDWSKDLATDQLGGWRTNPAFGGAVVNPGP HHCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCC LGGLPGGFGR CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA