Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487094

Identifier: 103487094

GI number: 103487094

Start: 1687263

End: 1688273

Strand: Reverse

Name: 103487094

Synonym: Sala_1609

Alternate gene names: NA

Gene position: 1688273-1687263 (Counterclockwise)

Preceding gene: 103487095

Following gene: 103487093

Centisome position: 50.47

GC content: 64.39

Gene sequence:

>1011_bases
ATGACGCATCGCCTCCTCGCCGCCGCCGCGGCTTTCGCTCTTGCCCTTCCCGCCGCCGCTGAGGAGCCGCCCCCCACGCC
GCTGTCGCCGGGGGAAATCGTCGATGCGGCGCCCGCGGCGGACTGGGTCGCGATTGCGCCCTCGGACCTTTTGGTCATGG
ACCTAGCGCCGGATGCAGCGGGCAAGGCGCGCCGCGTCGTCATTCAGCTGATGCCCGCGCCCTTCAGCCAGGGGTGGATC
GGCAATATCCGCAAGCTCGCCGCGGCGCACTGGTGGGACGGCACCAGCATCAACCGCGTTCAGGACAATTATGTCGTGCA
ATGGGGCGATGCGACGGAGAAGAAGGCTTTGCCGAATGGCTTGGTGACGGTGCGTGAGAGCGAATATGAAGCGCCGCTCG
ACAAGTATTTGCAGGCGGCATTGCATACGAAAATGAAGTCTGAGGAAGCCGGGCTGCTAGCTGCCTTCCGTCAATCGGGA
GACAAGAAGGTTCAGGCGGTCAAGTGGGCAATTCCGCGCGATCCCTTCGCCGAGGAGACCCTTGTTTTTAGGGGCTGGCC
GATTGCCGTTGATCGTCAAGAACAGTCCGCCTGGCCCGTTCACTGCTATGGCATGGTCGGCGTCGGCCGCAACCTTTCGC
CCGATACCGGCAGCGGCGCCGAACTTTATACCGTGATCGGTCATGCGCCGCGTCATCTAGACCGCAATATCGCGCTCGTC
GGCCGCGTCGTCGCGGGGATCGAACATCTGTCGAGTCTGCCGCGTGGGACGGGCGCGCTCGGCTTCTATGAAGAGGAAGC
GCAGCGGGTGCCGATCGCGTCTGTGCGCATTGCGAGCGAGTTGCCTGCCGCGGCACAGCCCCGGTTCGAATATCTGTCGA
CCGAGAGCGCGAGCTTTGCGAAATATGCCGACGCGCGCGCCAATCGTCGCGATCCCTTTTTCATCCGGCCTGCGGGGGGC
GCCGACATCTGCAACATTCCGGTGCCGGTGCGCCGGGTCGGAACGAAGTAG

Upstream 100 bases:

>100_bases
CGACCACTCGGCCACCGCTCCGCATCCTTGCACTGGAAGGCGCGCCCTAATCGGTTGGCGGGGCTTTCGCAAGCGGGATG
GCCGTGGCAGACATAGACGC

Downstream 100 bases:

>100_bases
CACGCGCTGGAATCCTTCACCGTCACGACGCCGCTGTGGCGCTGGCAATCGGCGACGGCGCCCGCCGCGTGGTTCTTTGT
GACCATAACGGGCGAGGCGG

Product: putative secreted peptidyl prolyl cis-trans isomerase, cyclophilin type

Products: NA

Alternate protein names: Peptidyl-Prolyl Cis-Trans Isomerase Cyclophilin Type; Peptidyl-Prolyl Cis-Trans Isomerase Cyclophilin-Type; Peptidyl-Prolyl Cis-Trans Isomerase Family Protein

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MTHRLLAAAAAFALALPAAAEEPPPTPLSPGEIVDAAPAADWVAIAPSDLLVMDLAPDAAGKARRVVIQLMPAPFSQGWI
GNIRKLAAAHWWDGTSINRVQDNYVVQWGDATEKKALPNGLVTVRESEYEAPLDKYLQAALHTKMKSEEAGLLAAFRQSG
DKKVQAVKWAIPRDPFAEETLVFRGWPIAVDRQEQSAWPVHCYGMVGVGRNLSPDTGSGAELYTVIGHAPRHLDRNIALV
GRVVAGIEHLSSLPRGTGALGFYEEEAQRVPIASVRIASELPAAAQPRFEYLSTESASFAKYADARANRRDPFFIRPAGG
ADICNIPVPVRRVGTK

Sequences:

>Translated_336_residues
MTHRLLAAAAAFALALPAAAEEPPPTPLSPGEIVDAAPAADWVAIAPSDLLVMDLAPDAAGKARRVVIQLMPAPFSQGWI
GNIRKLAAAHWWDGTSINRVQDNYVVQWGDATEKKALPNGLVTVRESEYEAPLDKYLQAALHTKMKSEEAGLLAAFRQSG
DKKVQAVKWAIPRDPFAEETLVFRGWPIAVDRQEQSAWPVHCYGMVGVGRNLSPDTGSGAELYTVIGHAPRHLDRNIALV
GRVVAGIEHLSSLPRGTGALGFYEEEAQRVPIASVRIASELPAAAQPRFEYLSTESASFAKYADARANRRDPFFIRPAGG
ADICNIPVPVRRVGTK
>Mature_335_residues
THRLLAAAAAFALALPAAAEEPPPTPLSPGEIVDAAPAADWVAIAPSDLLVMDLAPDAAGKARRVVIQLMPAPFSQGWIG
NIRKLAAAHWWDGTSINRVQDNYVVQWGDATEKKALPNGLVTVRESEYEAPLDKYLQAALHTKMKSEEAGLLAAFRQSGD
KKVQAVKWAIPRDPFAEETLVFRGWPIAVDRQEQSAWPVHCYGMVGVGRNLSPDTGSGAELYTVIGHAPRHLDRNIALVG
RVVAGIEHLSSLPRGTGALGFYEEEAQRVPIASVRIASELPAAAQPRFEYLSTESASFAKYADARANRRDPFFIRPAGGA
DICNIPVPVRRVGTK

Specific function: Unknown

COG id: COG0652

COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36293; Mature: 36161

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHRLLAAAAAFALALPAAAEEPPPTPLSPGEIVDAAPAADWVAIAPSDLLVMDLAPDAA
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCEEEECCCCEEEEEECCCCC
GKARRVVIQLMPAPFSQGWIGNIRKLAAAHWWDGTSINRVQDNYVVQWGDATEKKALPNG
CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCEEEEECCCCHHHCCCCC
LVTVRESEYEAPLDKYLQAALHTKMKSEEAGLLAAFRQSGDKKVQAVKWAIPRDPFAEET
EEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCE
LVFRGWPIAVDRQEQSAWPVHCYGMVGVGRNLSPDTGSGAELYTVIGHAPRHLDRNIALV
EEEECCCEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHCCCHHHH
GRVVAGIEHLSSLPRGTGALGFYEEEAQRVPIASVRIASELPAAAQPRFEYLSTESASFA
HHHHHHHHHHHHCCCCCCCCCEEHHHHCCCCCHHEEEHHHCCCCCCCCHHHHCCCCCHHH
KYADARANRRDPFFIRPAGGADICNIPVPVRRVGTK
HHHHHCCCCCCCEEEEECCCCCEECCCCCHHHCCCC
>Mature Secondary Structure 
THRLLAAAAAFALALPAAAEEPPPTPLSPGEIVDAAPAADWVAIAPSDLLVMDLAPDAA
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCEEEECCCCEEEEEECCCCC
GKARRVVIQLMPAPFSQGWIGNIRKLAAAHWWDGTSINRVQDNYVVQWGDATEKKALPNG
CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCEEEEECCCCHHHCCCCC
LVTVRESEYEAPLDKYLQAALHTKMKSEEAGLLAAFRQSGDKKVQAVKWAIPRDPFAEET
EEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCE
LVFRGWPIAVDRQEQSAWPVHCYGMVGVGRNLSPDTGSGAELYTVIGHAPRHLDRNIALV
EEEECCCEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCHHHCCCHHHH
GRVVAGIEHLSSLPRGTGALGFYEEEAQRVPIASVRIASELPAAAQPRFEYLSTESASFA
HHHHHHHHHHHHCCCCCCCCCEEHHHHCCCCCHHEEEHHHCCCCCCCCHHHHCCCCCHHH
KYADARANRRDPFFIRPAGGADICNIPVPVRRVGTK
HHHHHCCCCCCCEEEEECCCCCEECCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA